Cp4.1LG20g07420 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG20g07420
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Cyclin-dependent kinases regulatory subunit
Location	Cp4.1LG20: 6140620 .. 6142239 (+)
RNA-Seq Expression	Cp4.1LG20g07420
Synteny	Cp4.1LG20g07420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACGGATAACTTCTAAATCCCAAGGCGGGAATTTTGTTTGAAATTTGAAATTCAAACGGGGGGCATCTCCGCAAATTCAAAATAATTTCTTAATTTTCATTTTGGCCCCCTCAACTTTCCATATTTGCGCCGTTTCCCAAATTCAAAACGCTATTTTAACCCCTACTTCTCACGTTCGTCCATCTTCTTCTTCTTCTTCTTCTTCGTCGCTCTTCCAAGGTCTGCGATTTTTCATCTCCCAACTCTCTCTACGTTTTTCTTTCGATTTTGAATCTCTTTCTCTGATCTTGTTCGGATTTCTTCAGATTGAACAAGCGCTTGTGATCTTTCTGTCACAAATCCGGTGCGATGGGTCAGATCCAGTACTCTGAGAAATACTTTGATGATATCTATGAGTACAGGTCTGTAACTTCTCTTCCTCGTCTGANGCTTTTTTTTTTTTTTTTTTTATGCTGTGATTTTCTCCATCGGCATGGTTTGATTTTCATGGTTTTTGTTGATGGATGTTTTAGGCATGTCGTGCTTACTCCTGATGTGGCGAAACTTCTGCCCAAGAATCGCCTTCTTTCTGAGGTAAGTAATTTCACGATTCTCCTGTGTGGAATTGAAATTGGATGTTCATGATTTTACTGTATCAAATTTTCTTGTGTTTAAATCCTGTTCCGCTAATCGGAAATGTAAATAAATTGAAAGAGCGATTTCTTACATCGTACTGTGAACCCTAGCGGTTTCCAACACTGGGAATCATAGATTGTGGCTGATTGATTGTGTGATAGAATCTGGATGCCTTGAATTCATTGTAATTCGATTAAGTGATGATGAACAGAATGAATGGCGAGCGATTGGGGTTCAGCAGAGCCGTGGATGGGTGCATTATGCAATTCACCGCCCAGAGCCGCACATAATGCTGTTCAGGAGGCCACTCAACTATCAACAGCAGCAAGAGAATCAAGCTCAGCAGCAGATTCTGGCGAAGTGATAGGTTTATTATCTTTATTCTCTAGAAACACTATATTTTGTCTAGAACACTAATGGAATCTCTCCCTACAAATCAAAAGAAGAAAAAAATCAGGAAGCTCTGTGGCCCAGTGAGATCTCTGTCATAGTCATAAGCCCTCATTGATCTTGAATTTGTGGTTTTATATTGCTTTGGTATAAAAATATGGTTTTATCCTCTTCTGTTCTTCATGCCTGGCATCAATTACTTCTGATTTTATTGTTGAGATTCTCCTTAATGGATTATCCAATGTTATTTTCAACATTACTTGTAGGGCACAAGTATTGGAAAGAAAAATCCTGAGGATGTGAACAGAATATCACTGGTATAATCATCAATTTATTCATATATGACCGACCCTTTTAATTTATTTTCATAGTCTTAATTGGTTGTTTATTAATTTAAATATTTTTATGAATGTTCTACAATGTTCATAGTTTTTCTGCTTTTTTGTGTAAACATTTATCTTAGTGATGATCCTTTTCCTGTAAAATTGATATCTAAAGGTGTGTAATATTTTTCAATCCATTTGATTATTGTTTTGATTTAATCTCATTTGGACCATTTTATTTATATTGTCATATTCATTAAATTTGAAATAACAAAATTCTATATTTTTCAT

mRNA sequence

CAACGGATAACTTCTAAATCCCAAGGCGGGAATTTTGTTTGAAATTTGAAATTCAAACGGGGGGCATCTCCGCAAATTCAAAATAATTTCTTAATTTTCATTTTGGCCCCCTCAACTTTCCATATTTGCGCCGTTTCCCAAATTCAAAACGCTATTTTAACCCCTACTTCTCACGTTCGTCCATCTTCTTCTTCTTCTTCTTCTTCGTCGCTCTTCCAAGATTGAACAAGCGCTTGTGATCTTTCTGTCACAAATCCGGTGCGATGGGTCAGATCCAGTACTCTGAGAAATACTTTGATGATATCTATGAGTACAGGCATGTCGTGCTTACTCCTGATGTGGCGAAACTTCTGCCCAAGAATCGCCTTCTTTCTGAGAATGAATGGCGAGCGATTGGGGTTCAGCAGAGCCGTGGATGGGTGCATTATGCAATTCACCGCCCAGAGCCGCACATAATGCTGTTCAGGAGGCCACTCAACTATCAACAGCAGCAAGAGAATCAAGCTCAGCAGCAGATTCTGGCGAAGTGATAGGGCACAAGTATTGGAAAGAAAAATCCTGAGGATGTGAACAGAATATCACTGGTATAATCATCAATTTATTCATATATGACCGACCCTTTTAATTTATTTTCATAGTCTTAATTGGTTGTTTATTAATTTAAATATTTTTATGAATGTTCTACAATGTTCATAGTTTTTCTGCTTTTTTGTGTAAACATTTATCTTAGTGATGATCCTTTTCCTGTAAAATTGATATCTAAAGGTGTGTAATATTTTTCAATCCATTTGATTATTGTTTTGATTTAATCTCATTTGGACCATTTTATTTATATTGTCATATTCATTAAATTTGAAATAACAAAATTCTATATTTTTCAT

Coding sequence (CDS)

ATGGGTCAGATCCAGTACTCTGAGAAATACTTTGATGATATCTATGAGTACAGGCATGTCGTGCTTACTCCTGATGTGGCGAAACTTCTGCCCAAGAATCGCCTTCTTTCTGAGAATGAATGGCGAGCGATTGGGGTTCAGCAGAGCCGTGGATGGGTGCATTATGCAATTCACCGCCCAGAGCCGCACATAATGCTGTTCAGGAGGCCACTCAACTATCAACAGCAGCAAGAGAATCAAGCTCAGCAGCAGATTCTGGCGAAGTGA

Protein sequence

MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQQILAK

Homology

[Close]

BLAST of Cp4.1LG20g07420 vs. ExPASy Swiss-Prot
Match: O23249 (Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana OX=3702 GN=CKS1 PE=1 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 8.6e-41
Identity = 77/86 (89.53%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVL P+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRP
Sbjct: 1  MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIL 87
          EPHIMLFRRPLNYQQQQENQAQ  ++
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQNMLV 86

[Close]

BLAST of Cp4.1LG20g07420 vs. ExPASy Swiss-Prot
Match: A2XCH8 (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica OX=39946 GN=CKS1 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 8.0e-39
Identity = 75/81 (92.59%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVL P+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQA 82
          EPHIMLFRRPLN+QQQQE  A
Sbjct: 61 EPHIMLFRRPLNFQQQQEAAA 81

[Close]

BLAST of Cp4.1LG20g07420 vs. ExPASy Swiss-Prot
Match: Q6PS57 (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CKS1 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 8.0e-39
Identity = 75/81 (92.59%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVL P+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQA 82
          EPHIMLFRRPLN+QQQQE  A
Sbjct: 61 EPHIMLFRRPLNFQQQQEAAA 81

[Close]

BLAST of Cp4.1LG20g07420 vs. ExPASy Swiss-Prot
Match: Q9SJJ5 (Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CKS2 PE=1 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.7e-36
Identity = 69/80 (86.25%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD +EYRHVVL P+VAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQ 81
          EPHIMLFRRPLNYQQ+ + Q
Sbjct: 61 EPHIMLFRRPLNYQQEHQAQ 80

[Close]

BLAST of Cp4.1LG20g07420 vs. ExPASy Swiss-Prot
Match: P55933 (Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum OX=5791 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 8.3e-28
Identity = 53/66 (80.30%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 4  IQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPH 63
          IQYSEKY+DD +EYRHV+L PDVAK +PKNRLLSE EWR +GVQQS+GWVHYA+HRPEPH
Sbjct: 6  IQYSEKYYDDKFEYRHVILPPDVAKEIPKNRLLSEGEWRGLGVQQSQGWVHYALHRPEPH 65

Query: 64 IMLFRR 70
          I+LFRR
Sbjct: 66 ILLFRR 71

[Close]

BLAST of Cp4.1LG20g07420 vs. NCBI nr
Match: XP_022964884.1 (cyclin-dependent kinases regulatory subunit 1-like [Cucurbita moschata] >XP_022964885.1 cyclin-dependent kinases regulatory subunit 1-like [Cucurbita moschata] >XP_022970358.1 cyclin-dependent kinases regulatory subunit 1-like [Cucurbita maxima] >XP_022970359.1 cyclin-dependent kinases regulatory subunit 1-like [Cucurbita maxima] >XP_023519916.1 cyclin-dependent kinases regulatory subunit 1-like [Cucurbita pepo subsp. pepo] >XP_023519917.1 cyclin-dependent kinases regulatory subunit 1-like [Cucurbita pepo subsp. pepo] >KAG6583592.1 Cyclin-dependent kinases regulatory subunit 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019293.1 Cyclin-dependent kinases regulatory subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183 bits (464), Expect = 3.11e-58
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88
          EPHIMLFRRPLNYQQQQENQAQQQILAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]

BLAST of Cp4.1LG20g07420 vs. NCBI nr
Match: XP_011654109.1 (cyclin-dependent kinases regulatory subunit 1 [Cucumis sativus] >XP_016903015.1 PREDICTED: cyclin-dependent kinases regulatory subunit 1 isoform X2 [Cucumis melo] >KGN64861.1 hypothetical protein Csa_022815 [Cucumis sativus])

HSP 1 Score: 181 bits (460), Expect = 1.27e-57
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLTP+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88
          EPHIMLFRRPLNYQQQQENQAQQQILAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]

BLAST of Cp4.1LG20g07420 vs. NCBI nr
Match: XP_016903011.1 (PREDICTED: cyclin-dependent kinases regulatory subunit 1 isoform X1 [Cucumis melo])

HSP 1 Score: 180 bits (456), Expect = 7.49e-57
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLTP+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILA 87
          EPHIMLFRRPLNYQQQQENQAQQQILA
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILA 87

[Close]

BLAST of Cp4.1LG20g07420 vs. NCBI nr
Match: XP_038894383.1 (cyclin-dependent kinases regulatory subunit 1 [Benincasa hispida])

HSP 1 Score: 179 bits (454), Expect = 1.04e-56
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVL P+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88
          EPHIMLFRRPLNYQQQQENQAQQQILAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]

BLAST of Cp4.1LG20g07420 vs. NCBI nr
Match: GAV69670.1 (CKS domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 176 bits (447), Expect = 1.22e-55
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLTP+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88
          EPHIMLFRRPLNYQQQQENQAQQ +LAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQNMLAK 88

[Close]

BLAST of Cp4.1LG20g07420 vs. ExPASy TrEMBL
Match: A0A6J1I3M7 (Cyclin-dependent kinases regulatory subunit OS=Cucurbita maxima OX=3661 GN=LOC111469347 PE=3 SV=1)

HSP 1 Score: 183 bits (464), Expect = 1.50e-58
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88
          EPHIMLFRRPLNYQQQQENQAQQQILAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]

BLAST of Cp4.1LG20g07420 vs. ExPASy TrEMBL
Match: A0A6J1HM34 (Cyclin-dependent kinases regulatory subunit OS=Cucurbita moschata OX=3662 GN=LOC111464859 PE=3 SV=1)

HSP 1 Score: 183 bits (464), Expect = 1.50e-58
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88
          EPHIMLFRRPLNYQQQQENQAQQQILAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]

BLAST of Cp4.1LG20g07420 vs. ExPASy TrEMBL
Match: A0A0A0LY04 (Cyclin-dependent kinases regulatory subunit OS=Cucumis sativus OX=3659 GN=Csa_1G132710 PE=3 SV=1)

HSP 1 Score: 181 bits (460), Expect = 6.14e-58
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLTP+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88
          EPHIMLFRRPLNYQQQQENQAQQQILAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]

BLAST of Cp4.1LG20g07420 vs. ExPASy TrEMBL
Match: A0A1S4E4W6 (Cyclin-dependent kinases regulatory subunit OS=Cucumis melo OX=3656 GN=LOC103500769 PE=3 SV=1)

HSP 1 Score: 181 bits (460), Expect = 6.14e-58
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLTP+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88
          EPHIMLFRRPLNYQQQQENQAQQQILAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]

BLAST of Cp4.1LG20g07420 vs. ExPASy TrEMBL
Match: A0A1S4E453 (Cyclin-dependent kinases regulatory subunit OS=Cucumis melo OX=3656 GN=LOC103500769 PE=3 SV=1)

HSP 1 Score: 180 bits (456), Expect = 3.63e-57
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLTP+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILA 87
          EPHIMLFRRPLNYQQQQENQAQQQILA
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILA 87

[Close]

BLAST of Cp4.1LG20g07420 vs. TAIR 10
Match: AT2G27960.1 (cyclin-dependent kinase-subunit 1 )

HSP 1 Score: 167.2 bits (422), Expect = 6.1e-42
Identity = 77/86 (89.53%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVL P+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRP
Sbjct: 1  MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIL 87
          EPHIMLFRRPLNYQQQQENQAQ  ++
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQNMLV 86

[Close]

BLAST of Cp4.1LG20g07420 vs. TAIR 10
Match: AT2G27970.1 (CDK-subunit 2 )

HSP 1 Score: 152.9 bits (385), Expect = 1.2e-37
Identity = 69/80 (86.25%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD +EYRHVVL P+VAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQ 81
          EPHIMLFRRPLNYQQ+ + Q
Sbjct: 61 EPHIMLFRRPLNYQQEHQAQ 80

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g07420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23249	8.6e-41	89.53	Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana OX=3702 GN...	[more]
A2XCH8	8.0e-39	92.59	Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica OX=3...	[more]
Q6PS57	8.0e-39	92.59	Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica OX...	[more]
Q9SJJ5	1.7e-36	86.25	Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana OX=3702 GN...	[more]
P55933	8.3e-28	80.30	Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum OX...	[more]

BLAST of Cp4.1LG20g07420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964884.1	3.11e-58	100.00	cyclin-dependent kinases regulatory subunit 1-like [Cucurbita moschata] >XP_0229...	[more]
XP_011654109.1	1.27e-57	98.86	cyclin-dependent kinases regulatory subunit 1 [Cucumis sativus] >XP_016903015.1 ...	[more]
XP_016903011.1	7.49e-57	98.85	PREDICTED: cyclin-dependent kinases regulatory subunit 1 isoform X1 [Cucumis mel...	[more]
XP_038894383.1	1.04e-56	97.73	cyclin-dependent kinases regulatory subunit 1 [Benincasa hispida]	[more]
GAV69670.1	1.22e-55	95.45	CKS domain-containing protein [Cephalotus follicularis]	[more]

BLAST of Cp4.1LG20g07420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I3M7	1.50e-58	100.00	Cyclin-dependent kinases regulatory subunit OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1HM34	1.50e-58	100.00	Cyclin-dependent kinases regulatory subunit OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A0A0LY04	6.14e-58	98.86	Cyclin-dependent kinases regulatory subunit OS=Cucumis sativus OX=3659 GN=Csa_1G...	[more]
A0A1S4E4W6	6.14e-58	98.86	Cyclin-dependent kinases regulatory subunit OS=Cucumis melo OX=3656 GN=LOC103500...	[more]
A0A1S4E453	3.63e-57	98.85	Cyclin-dependent kinases regulatory subunit OS=Cucumis melo OX=3656 GN=LOC103500...	[more]

BLAST of Cp4.1LG20g07420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27960.1	6.1e-42	89.53	cyclin-dependent kinase-subunit 1	[more]
AT2G27970.1	1.2e-37	86.25	CDK-subunit 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000789	Cyclin-dependent kinase, regulatory subunit	PRINTS	PR00296	CYCLINKINASE	coord: 40..54 score: 75.9 coord: 3..17 score: 64.1 coord: 55..69 score: 76.41 coord: 18..32 score: 56.41
IPR000789	Cyclin-dependent kinase, regulatory subunit	SMART	SM01084	CKS_2	coord: 3..72 e-value: 1.1E-45 score: 167.7
IPR000789	Cyclin-dependent kinase, regulatory subunit	PFAM	PF01111	CKS	coord: 4..70 e-value: 1.2E-34 score: 118.4
IPR000789	Cyclin-dependent kinase, regulatory subunit	PROSITE	PS00944	CKS_1	coord: 6..24
IPR036858	Cyclin-dependent kinase, regulatory subunit superfamily	GENE3D	3.30.170.10		coord: 1..84 e-value: 6.2E-39 score: 134.3
IPR036858	Cyclin-dependent kinase, regulatory subunit superfamily	SUPERFAMILY	55637	Cell cycle regulatory proteins	coord: 1..83
None	No IPR available	PANTHER	PTHR23415:SF29	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT	coord: 1..86
None	No IPR available	PANTHER	PTHR23415	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	coord: 1..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g07420.1	Cp4.1LG20g07420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0045737	positive regulation of cyclin-dependent protein serine/threonine kinase activity
biological_process	GO:0007346	regulation of mitotic cell cycle
cellular_component	GO:0000307	cyclin-dependent protein kinase holoenzyme complex
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0061575	cyclin-dependent protein serine/threonine kinase activator activity
molecular_function	GO:0042393	histone binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0019901	protein kinase binding
molecular_function	GO:0043130	ubiquitin binding
molecular_function	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity