Cp4.1LG20g07330 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG20g07330
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	recQ-mediated genome instability protein 2
Location	Cp4.1LG20: 6118066 .. 6122871 (-)
RNA-Seq Expression	Cp4.1LG20g07330
Synteny	Cp4.1LG20g07330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATATAAAACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCACTTAGCTTCCGGTTCGGTTCGGTTGAAAACCAGGCGGCAAAACCTGGAAGTGAAGAGAGCGAAAGAAAGAAGCGGAGAAATGGATTATAGCTTAGCAGCGTTGAAGCTTCTGTGCAGGCAGCTCAACGACGCCCGCCAAGCTCCGTCCAACAACGCCGCCACACTCGGCGGCATTCTCTTCCAACGCGCCTGGCTTCAGGTCCTCTCTTCCACATTCTTCCCTTCTCTTACTCTCTCTCTCTCTCTCTCGATCCTTCTCTTTAATCAGAGCTCTCCCTGCAGGGGATTTTGGTCTTCGTCGACAGAGATAATGGTAAGCTGATTCTCGACGACGGAACCGGCACCGTCGAGCTCTCTCTTTCTGGCGACTTCCGCCAACGCCCTTGGAGCCTCGGTACTTGACCTCCTACTTTCCGTTCTCTCTTTCTTTTTCTTTTCTTTTATTTCTGCTGCCTTTTGATTTGGTTTCTCTCGCTTTCTTTGTTCGTTTTGTACAGGAATGTATGTGATGGTTGTTGGCGCTTATGTCGTCCGGACGAATGAACCGTCCATTATTGCGGTGAGATCGAGACTTCATCCTCTATTCCTTTTTGTTTCCTCCGCTCTCTCTTGCCTTTTTTCCTTGATGATCGTCCTGTGCTTGATATATAGAGAAGATTTCAATGTTTTCTTCTTAAGAGAAAATGAAGTACTGAAAAATTGACTCGAATATCATCAATCTACCAATTTTGTTGTGATGAGATCGCTGTGATTCTAACGATTTCTTTTGAGTTTAATGTTTTATTTACTAAATCATATTGTATTTGCTCTTGTAGTTCCCTTCATCGTAATGTATTTCCTTAGTTGAAGATTCTTGGCTTTCAGTTTTATTTTTATCTACAAAGTCTTTACAAGATACCTTTGCCGGGTGCGGGCTTATTCAGTAAAGAAAGCACTTCTGAAATCGGGCTTTCGTATCCTCGAAAATGAAACTAGTGCCTGAAAACGACGTAATGAAATGAATCTATAAAAATTAGAATACTAGACAAGTTATATCTATAGAAGATTCTCATAGAACATAGAAGAGATCCTTTTGATAAATGCCTACTTTGATTACCAGGCTAAAACAAGGACCATAGAGCACCGCGTCTTGGTTTCTATTCTATTTCTCTCCTTTGAATTCCATTTGTGTTGTGACGAAGACTTGGTTTGTCTTAACTTGGTGCTACACCTCAAAGCGTAATCCGATCTGAAATGAATTGGCTTGGCCGCAATGCCGGGGATATCTTCACCCTCATTTCTTTATTACTTTTGAGTCATTCATTCAAAAAGGACAAGCGGATCATTTAGGTTAATCATGTTCGAACTTTCATATTGTATCTTTGGTTTGAGCACAATGGTCGTATCATTACAAATAAGAGTCGTAATATCAACTATTTTATAGAAGCCACCTCTCTTTTTAGCTATTACTTGAAGCAACTCGTTTCCTCCCTCTTGTAATTATAGCTTATCTACCATCGTGAATCAATTGAAGTGCTGTTTTGTAATTATTGTCTGATAGAATCTTCTTCTGTATTACCTACTTCATCATATCAATGAATGGTTTTTGTTTTTTATCGAAAAGTTTTCGAATGCATAATAAGAGGTTGATGCTTGGTTTTTGGATTATTAAACTGCATTTTTGAAGACACTGTAACATGATGATTCCACTACTTTCGAGAAATTTATTGAATCGATTCTTTTTAAGATGTATGCAGCCATTTAAGATTACAGCCTAATGTCTCTTATTACCTGGTGGAGACTTTTTCGTAATCCACCTTTGGTCGTTGGGAACGACCACCCTCCCCTTTTATAAATCTCATTCAATCAATGAACCTCTGTTACCCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANACTTTATGGACATTATATGTGGTCTTTCTGGGTGCATCAGCTAATTTTTGTAGGTTTCTACCTTTTGTAAAGCTTGTTGATTGGTTTCCTATATTCTCCAGGTGGTGCGAGTTGTTAAGCTTTTTCCTATGTTCATGGGTGTAGTAGATAAGCCAACAGCCATAGAAACATGTTGGTGGATAATTCAGTATTTTCAGATGATTCTTTTAGCATTCGATTAAATTTCTATTGCTATCTTTGAGATGGTTGGCTTCTCTTAATTTCAAGCAAGTTTTATCCAAATAAGTTCTACATTTTAGCTGTCTTTGCCTCTCTTTCCATCATTTTCTTTGTACTACACCTTCATTTGCTGGTGTTCAACATGTAGGTGTGATGTTTTGTTGCATTGGCATTTAGTGTCCCATGCGCTGGAGATTAACTCTCATAGGGCTTTGTTGTCCCCATAACATGACAACAGCCAACTTTTGTAGATAACACTAAATTCCTTACCATGTCTAATACCGAGGAGGAAAGACAGTGTTCGTAACTTAAAGTTACTTAATAGCATAGAGTTTTGATATCTACCATCAACAAGAACTGATGTTAGTTAGTTTTGTGATTTTATGTTTGCATCAGGTGCACAAGATTGTTGATCTATCAATGTTTCCTGGTCGAGAGGCAATGTGGTACCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGGTTGAAGAATTTTCGTAACTCGTTTTGCTGACTCAACAGGTAATGCTTACTGTATTTTCATGTTAATCCTGTAATGAAAATGCATCAATTTTTTGCAAGCTCACAGATGGGTTTTTTTTCTCTTATTACATATTTAAACTCCAATTGAAATTCTCATCTCATGTATTGTTAGGATGATCTTTTGATCTCGTAAGATCACAACTATAAGTTAGAGAATCCGAGTATTATCCTTTCGTAGGCGTAATAGAGAAAACATAAATAGATAAGGATAAGCAGATTAGGAGAGCCAACCCTGTTGCTGTCTCTGATGTTATAAAAAGGAATTACCATAGTAGTTGAGGTAATCCTTGGTCTTGTCGTTTAGTTTCTTTTCAACTATTTAAATGCTTGGTTTGTTGTAAATGTGCTATAAATAGAGTGTTTCTCTCTTGTGATCAATAACATTTGGATGATAATAAAGAAACGATTCAGATTCTTGGAGACTTCACCTTGAGGCTAGTTAGGCTACACCATTTTGCCCCATCAGAAACATTTGTAGTGGACATATTAGAAAATTTCTATAACAAAGTTTGATCAAGGAATACATACAGAGTACTCGACCTAAGTTATGGGGTGATGGGTGTCATGGTCCTACCTTTTTCAGTATTCTGCAATTTCTTCTCGCATAGTTAGTAATAAGAATTCTACTGCCTCAATAATCAACAAAACAGTTTCAAACTAGTTGAACTGGGTAAGTTCTTTCTCCACAAAACCAAGCCCACTTATCTTGCATGTTGGATGGCACCCAAATTAACCAAGCTCTCTTTGCTTTTAGATGGTTTAATCTTAAGCTTATAATGACAACTTCCATGGAGCTTGAATGGCCCTTGTCTTCTCTTTGTGTCTCGAGTTGTCTCACCTCTTCTCCATGCCAAGATCTCCGACTTTAGTCCTACCTCTACTTTAGGCTGTAAGGCTAAGACTTTCTTGAACTTAGCGTCACCTTGCTTACTCAAATATAGCCCACAATGTTCTTTTTCTTGACTATTTGAGACACCAAGATGACTGTTAGTCCCTCTCTGCCTGGCGAAAATATGCATCAATCCTTGCTTAATGATAAAGTATCTTGATGCAATTTCCAGTCTTAAGAGGCACACATATGATATGACATGACATGGACGTGGTGACACCCCATTTTTTTAAACCTAGGACACTGACTCAATAAGGACATGTTTGTTAAACTATAAAATATATATCATTTTTAAAGTTAACAAGTTTTATGCATTTATTTGATTCAGAAATGATTTTAATCTATTTCCTTCTCAAAAATTTATTTAAAGTTAAATATTCGACGTGTCTAAAATGTTGGACCTACATTAACTTCGTATAATTAGTGTCTAACCCATATATTATGTTAATAGGTGTGAAATGTGTTCAACGAGTATTAGAGTGTTTAAGGGTCTAACATAGTTGGACATGGACATACTAGCCAAACTAAAGTGTTCGTGCTTATTAGTATCCATCAACTTTGAAACCGTTTATAGTGATATAGAATGTCAATCATGTCTCTCATGCATACCTACTGCTAGATGCCTATTTTTGAGACTAGGCCATAGATTGAATTGAACCTCAAGCCAATATCGAGTACAATGTCGAAAGGAATCTTTCACTCCCCTTTGGAGATAATGAATCTTTTTTTTTTTGTTCAGGATGTTCACGCATTACATTCCGAAGTTACTCTCCATGGACTGACATACTTTTGTGAAAGATCAAACTTTGTCTACCGAATGGTTCACTTAGGGAGAGGGACCTCGTTTACCTTACCCAGTGATATGCCGAAAGGTCGATGCCATAGAGTTAGAGCCTTCAATTATTATGAATATGTTGTGGGAGGGGTGATATGGAAAAACATTGTTTGACAATGAATTATTTGAGGTACCTAGTAGATTGGGACATATATAGGAGAATAGGGAACAATTATTTGTTTTACAGGAGGTGGCTAGTGTATTACAGCAATTGTCTACAACAATCATTTTGAAAAACCATCACTTTCTTTCCCATGTTATAACTTCAAAACCATCATATTCTTCCTACTCTTCCTCCTCCTTTTCTCTCCTCTCGCATTCCATCATAGTT

mRNA sequence

ATATATAAAACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCACTTAGCTTCCGGTTCGGTTCGGTTGAAAACCAGGCGGCAAAACCTGGAAGTGAAGAGAGCGAAAGAAAGAAGCGGAGAAATGGATTATAGCTTAGCAGCGTTGAAGCTTCTGTGCAGGCAGCTCAACGACGCCCGCCAAGCTCCGTCCAACAACGCCGCCACACTCGGCGGCATTCTCTTCCAACGCGCCTGGCTTCAGGGGATTTTGGTCTTCGTCGACAGAGATAATGGTAAGCTGATTCTCGACGACGGAACCGGCACCGTCGAGCTCTCTCTTTCTGGCGACTTCCGCCAACGCCCTTGGAGCCTCGGAATGTATGTGATGGTTGTTGGCGCTTATGTCGTCCGGACGAATGAACCGTCCATTATTGCGGTGCACAAGATTGTTGATCTATCAATGTTTCCTGGTCGAGAGGCAATGTGGTACCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGGTTGAAGAATTTTCGTAACTCGTTTTGCTGACTCAACAGGATGTTCACGCATTACATTCCGAAGTTACTCTCCATGGACTGACATACTTTTGTGAAAGATCAAACTTTGTCTACCGAATGGTTCACTTAGGGAGAGGGACCTCGTTTACCTTACCCAGTGATATGCCGAAAGGTCGATGCCATAGAGTTAGAGCCTTCAATTATTATGAATATGTTGTGGGAGGGGTGATATGGAAAAACATTGTTTGACAATGAATTATTTGAGGTACCTAGTAGATTGGGACATATATAGGAGAATAGGGAACAATTATTTGTTTTACAGGAGGTGGCTAGTGTATTACAGCAATTGTCTACAACAATCATTTTGAAAAACCATCACTTTCTTTCCCATGTTATAACTTCAAAACCATCATATTCTTCCTACTCTTCCTCCTCCTTTTCTCTCCTCTCGCATTCCATCATAGTT

Coding sequence (CDS)

ATGGATTATAGCTTAGCAGCGTTGAAGCTTCTGTGCAGGCAGCTCAACGACGCCCGCCAAGCTCCGTCCAACAACGCCGCCACACTCGGCGGCATTCTCTTCCAACGCGCCTGGCTTCAGGGGATTTTGGTCTTCGTCGACAGAGATAATGGTAAGCTGATTCTCGACGACGGAACCGGCACCGTCGAGCTCTCTCTTTCTGGCGACTTCCGCCAACGCCCTTGGAGCCTCGGAATGTATGTGATGGTTGTTGGCGCTTATGTCGTCCGGACGAATGAACCGTCCATTATTGCGGTGCACAAGATTGTTGATCTATCAATGTTTCCTGGTCGAGAGGCAATGTGGTACCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGGTTGAAGAATTTTCGTAA

Protein sequence

MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTGTVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVMEAYKMFYEPLVEEFS

Homology

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BLAST of Cp4.1LG20g07330 vs. ExPASy Swiss-Prot
Match: Q96E14 (RecQ-mediated genome instability protein 2 OS=Homo sapiens OX=9606 GN=RMI2 PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.6e-06
Identity = 46/124 (37.10%), Postives = 61/124 (49.19%), Query Frame = 0


Query: 8   LKLLCRQL-NDARQAP-----SNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTGT 67
           LK+L  QL  DA   P     S  AA  G +     W+QG +V  DR   +L    G  +
Sbjct: 23  LKVLAEQLRRDAEGGPGAWRLSRAAAGRGPLDLAAVWMQGRVVMADRGEARLRDPSGDFS 82

Query: 68  VELSLSGDFRQRPWSL-GMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM 125
           V   L    R RP  + G YVMV+G     + EP + AV K+ DLS  P  E+MW LEV 
Sbjct: 83  VR-GLERVPRGRPCLVPGKYVMVMGVVQACSPEPCLQAV-KMTDLSDNPIHESMWELEVE 142

[Close]

BLAST of Cp4.1LG20g07330 vs. ExPASy Swiss-Prot
Match: Q5ZM20 (RecQ-mediated genome instability protein 2 OS=Gallus gallus OX=9031 GN=RMI2 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.3e-05
Identity = 43/127 (33.86%), Postives = 61/127 (48.03%), Query Frame = 0


Query: 8   LKLLCRQLNDARQAP------SNNAATLGGILFQRAWLQGILVFVDR-DNGKLILDDGTG 67
           LK+L  QL  A +        S        +  +  W+QG ++ V+R   G   L DG+G
Sbjct: 10  LKVLAAQLRAAGRGAGGTWRLSRTETGRAPLCLRAVWMQGTVLQVERGGGGSARLRDGSG 69

Query: 68  -TVELSLSGDFRQRP-WSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLE 126
               L +    R RP  S G YVMV+G     + EP + A+ K+ DLS  P  E MW LE
Sbjct: 70  HFTVLGVEDVPRGRPCLSAGKYVMVMGMVRACSPEPVLRAI-KMTDLSENPVHEEMWGLE 129

[Close]

BLAST of Cp4.1LG20g07330 vs. ExPASy Swiss-Prot
Match: A5PJU7 (RecQ-mediated genome instability protein 2 OS=Bos taurus OX=9913 GN=RMI2 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.8e-04
Identity = 42/128 (32.81%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 8   LKLLCRQL-NDARQAPSN---NAATLG--GILFQRAWLQGILVFVDRDNGKLILDDGTGT 67
           +K+L  QL  DA   P +   + A +G   +  +  W+QG +  V+   G   L D +G+
Sbjct: 24  IKVLAEQLRRDAEGGPGSWRLSRAAVGREPLELRAVWMQGTV--VEAGGGVARLRDPSGS 83

Query: 68  VEL-SLSGDFRQRPWSL-GMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEV 127
             +  L    R RP  + G YVMV+G     + EP + AV K+ DLS  P  E++W LEV
Sbjct: 84  FSVRGLERVPRGRPCLVPGKYVMVMGVIQACSPEPCLQAV-KMTDLSDNPLHESLWELEV 143

[Close]

BLAST of Cp4.1LG20g07330 vs. NCBI nr
Match: XP_022964663.1 (uncharacterized protein LOC111464675 isoform X1 [Cucurbita moschata] >XP_023519120.1 uncharacterized protein LOC111782580 isoform X1 [Cucurbita pepo subsp. pepo] >KAG6583596.1 RecQ-mediated genome instability protein 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019296.1 RecQ-mediated genome instability protein 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 272 bits (695), Expect = 5.70e-92
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60
           MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60

Query: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM 120
           TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM
Sbjct: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEFS 135
           EAYKMFYEPLVEEFS
Sbjct: 121 EAYKMFYEPLVEEFS 135

[Close]

BLAST of Cp4.1LG20g07330 vs. NCBI nr
Match: XP_022970350.1 (uncharacterized protein LOC111469342 [Cucurbita maxima] >XP_022970351.1 uncharacterized protein LOC111469342 [Cucurbita maxima])

HSP 1 Score: 268 bits (686), Expect = 1.34e-90
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60
           MDY+LAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG
Sbjct: 1   MDYNLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60

Query: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM 120
           TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLS FPGREAMWYLEVM
Sbjct: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSKFPGREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEFS 135
           EAYKMFYEPLVEEFS
Sbjct: 121 EAYKMFYEPLVEEFS 135

[Close]

BLAST of Cp4.1LG20g07330 vs. NCBI nr
Match: XP_038894076.1 (uncharacterized protein LOC120082820 [Benincasa hispida])

HSP 1 Score: 236 bits (601), Expect = 1.24e-77
Identity = 116/135 (85.93%), Postives = 124/135 (91.85%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60
           MDYSLAALKLLCRQL DARQ+P+NNAATLGGILFQRAWLQG LV VD++N KLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLKDARQSPTNNAATLGGILFQRAWLQGNLVSVDKENAKLILDDGTG 60

Query: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM 120
           TVELSLS DFR RPW LGMYVMVVGA+V RTNEP +IAVHKIVDLS FP REAMWYLEV+
Sbjct: 61  TVELSLSRDFRLRPWILGMYVMVVGAFVFRTNEPPVIAVHKIVDLSKFPDREAMWYLEVV 120

Query: 121 EAYKMFYEPLVEEFS 135
           EAYKMFYEPL+EEFS
Sbjct: 121 EAYKMFYEPLIEEFS 135

[Close]

BLAST of Cp4.1LG20g07330 vs. NCBI nr
Match: XP_022152884.1 (recQ-mediated genome instability protein 2 isoform X1 [Momordica charantia] >XP_022152885.1 recQ-mediated genome instability protein 2 isoform X1 [Momordica charantia])

HSP 1 Score: 223 bits (567), Expect = 1.88e-72
Identity = 109/134 (81.34%), Postives = 118/134 (88.06%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60
           MDYSLAALK+LC QL  AR  PS +AATLGGILFQRAWLQGILV VD+ N +L+LDDGTG
Sbjct: 1   MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTG 60

Query: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM 120
           TVELSLS DFR RPW+LGMYVMVVGA+V+R NEP II VHKIVDLS FP REAMWYLEVM
Sbjct: 61  TVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVHKIVDLSEFPSREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEF 134
           EAYKMFYEPL+EEF
Sbjct: 121 EAYKMFYEPLIEEF 134

[Close]

BLAST of Cp4.1LG20g07330 vs. NCBI nr
Match: XP_008462275.1 (PREDICTED: recQ-mediated genome instability protein 2 [Cucumis melo] >KAA0052096.1 recQ-mediated genome instability protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 219 bits (559), Expect = 3.12e-71
Identity = 110/134 (82.09%), Postives = 117/134 (87.31%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60
           MDYSLAALKLLCRQL DAR  PS+  ATL GILFQRAWLQGILV VD++NGKLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60

Query: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM 120
           TVELSL  +F  RPWSLGMYVMVVGA++ RTNEP  I+VHKIVDLS  P REAMWYLEVM
Sbjct: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEF 134
           EAYKMFYEPLVEEF
Sbjct: 121 EAYKMFYEPLVEEF 134

[Close]

BLAST of Cp4.1LG20g07330 vs. ExPASy TrEMBL
Match: A0A6J1HLJ4 (uncharacterized protein LOC111464675 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464675 PE=4 SV=1)

HSP 1 Score: 272 bits (695), Expect = 2.76e-92
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60
           MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60

Query: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM 120
           TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM
Sbjct: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEFS 135
           EAYKMFYEPLVEEFS
Sbjct: 121 EAYKMFYEPLVEEFS 135

[Close]

BLAST of Cp4.1LG20g07330 vs. ExPASy TrEMBL
Match: A0A6J1I0C8 (uncharacterized protein LOC111469342 OS=Cucurbita maxima OX=3661 GN=LOC111469342 PE=4 SV=1)

HSP 1 Score: 268 bits (686), Expect = 6.51e-91
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60
           MDY+LAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG
Sbjct: 1   MDYNLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60

Query: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM 120
           TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLS FPGREAMWYLEVM
Sbjct: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSKFPGREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEFS 135
           EAYKMFYEPLVEEFS
Sbjct: 121 EAYKMFYEPLVEEFS 135

[Close]

BLAST of Cp4.1LG20g07330 vs. ExPASy TrEMBL
Match: A0A6J1DF83 (recQ-mediated genome instability protein 2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020510 PE=4 SV=1)

HSP 1 Score: 223 bits (567), Expect = 9.12e-73
Identity = 109/134 (81.34%), Postives = 118/134 (88.06%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60
           MDYSLAALK+LC QL  AR  PS +AATLGGILFQRAWLQGILV VD+ N +L+LDDGTG
Sbjct: 1   MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTG 60

Query: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM 120
           TVELSLS DFR RPW+LGMYVMVVGA+V+R NEP II VHKIVDLS FP REAMWYLEVM
Sbjct: 61  TVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVHKIVDLSEFPSREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEF 134
           EAYKMFYEPL+EEF
Sbjct: 121 EAYKMFYEPLIEEF 134

[Close]

BLAST of Cp4.1LG20g07330 vs. ExPASy TrEMBL
Match: A0A5A7UD07 (RecQ-mediated genome instability protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G00780 PE=4 SV=1)

HSP 1 Score: 219 bits (559), Expect = 1.51e-71
Identity = 110/134 (82.09%), Postives = 117/134 (87.31%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60
           MDYSLAALKLLCRQL DAR  PS+  ATL GILFQRAWLQGILV VD++NGKLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60

Query: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM 120
           TVELSL  +F  RPWSLGMYVMVVGA++ RTNEP  I+VHKIVDLS  P REAMWYLEVM
Sbjct: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEF 134
           EAYKMFYEPLVEEF
Sbjct: 121 EAYKMFYEPLVEEF 134

[Close]

BLAST of Cp4.1LG20g07330 vs. ExPASy TrEMBL
Match: A0A1S3CGI5 (recQ-mediated genome instability protein 2 OS=Cucumis melo OX=3656 GN=LOC103500657 PE=4 SV=1)

HSP 1 Score: 219 bits (559), Expect = 1.51e-71
Identity = 110/134 (82.09%), Postives = 117/134 (87.31%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60
           MDYSLAALKLLCRQL DAR  PS+  ATL GILFQRAWLQGILV VD++NGKLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60

Query: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLEVM 120
           TVELSL  +F  RPWSLGMYVMVVGA++ RTNEP  I+VHKIVDLS  P REAMWYLEVM
Sbjct: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFISVHKIVDLSKSPNREAMWYLEVM 120

Query: 121 EAYKMFYEPLVEEF 134
           EAYKMFYEPLVEEF
Sbjct: 121 EAYKMFYEPLVEEF 134

[Close]

BLAST of Cp4.1LG20g07330 vs. TAIR 10
Match: AT1G08390.1 (unknown protein; Has 62 Blast hits to 62 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 183.7 bits (465), Expect = 9.6e-47
Identity = 88/137 (64.23%), Postives = 107/137 (78.10%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGK--LILDDG 60
           MDYSLAA+K+LC QL DA+  PS NAA+LGG+LFQRAWLQG+LV      G   L+LDDG
Sbjct: 1   MDYSLAAVKMLCSQLRDAKPTPSQNAASLGGVLFQRAWLQGVLVPFSGGGGDNCLVLDDG 60

Query: 61  TGTVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIAVHKIVDLSMFPGREAMWYLE 120
           TG +EL L+ DF  R W  GMYVMVVG Y VRT +  ++ VHK+VDLS+ P REAMWYLE
Sbjct: 61  TGLLELGLTNDFALRQWKSGMYVMVVGVYQVRTGQIPLLKVHKMVDLSVSPDREAMWYLE 120

Query: 121 VMEAYKMFYEPLVEEFS 136
           VM+AY++FYEPL++EFS
Sbjct: 121 VMDAYRLFYEPLIQEFS 137

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g07330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96E14	1.6e-06	37.10	RecQ-mediated genome instability protein 2 OS=Homo sapiens OX=9606 GN=RMI2 PE=1 ...	[more]
Q5ZM20	2.3e-05	33.86	RecQ-mediated genome instability protein 2 OS=Gallus gallus OX=9031 GN=RMI2 PE=2...	[more]
A5PJU7	5.8e-04	32.81	RecQ-mediated genome instability protein 2 OS=Bos taurus OX=9913 GN=RMI2 PE=2 SV...	[more]

BLAST of Cp4.1LG20g07330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964663.1	5.70e-92	100.00	uncharacterized protein LOC111464675 isoform X1 [Cucurbita moschata] >XP_0235191...	[more]
XP_022970350.1	1.34e-90	98.52	uncharacterized protein LOC111469342 [Cucurbita maxima] >XP_022970351.1 uncharac...	[more]
XP_038894076.1	1.24e-77	85.93	uncharacterized protein LOC120082820 [Benincasa hispida]	[more]
XP_022152884.1	1.88e-72	81.34	recQ-mediated genome instability protein 2 isoform X1 [Momordica charantia] >XP_...	[more]
XP_008462275.1	3.12e-71	82.09	PREDICTED: recQ-mediated genome instability protein 2 [Cucumis melo] >KAA0052096...	[more]

BLAST of Cp4.1LG20g07330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HLJ4	2.76e-92	100.00	uncharacterized protein LOC111464675 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1I0C8	6.51e-91	98.52	uncharacterized protein LOC111469342 OS=Cucurbita maxima OX=3661 GN=LOC111469342...	[more]
A0A6J1DF83	9.12e-73	81.34	recQ-mediated genome instability protein 2 isoform X1 OS=Momordica charantia OX=...	[more]
A0A5A7UD07	1.51e-71	82.09	RecQ-mediated genome instability protein 2 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3CGI5	1.51e-71	82.09	recQ-mediated genome instability protein 2 OS=Cucumis melo OX=3656 GN=LOC1035006...	[more]

BLAST of Cp4.1LG20g07330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08390.1	9.6e-47	64.23	unknown protein; Has 62 Blast hits to 62 proteins in 27 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032245	RecQ-mediated genome instability protein 2	PFAM	PF16100	RMI2	coord: 6..123 e-value: 2.5E-32 score: 111.5
IPR032245	RecQ-mediated genome instability protein 2	PANTHER	PTHR33962	RECQ-MEDIATED GENOME INSTABILITY PROTEIN 2 RMI2	coord: 1..133
None	No IPR available	GENE3D	2.40.50.140		coord: 4..126 e-value: 1.8E-31 score: 110.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g07330.1	Cp4.1LG20g07330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043007	maintenance of rDNA
biological_process	GO:2000042	negative regulation of double-strand break repair via homologous recombination
biological_process	GO:0009555	pollen development
biological_process	GO:0033045	regulation of sister chromatid segregation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016607	nuclear speck