Cp4.1LG20g06680 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG20g06680
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG20: 4529923 .. 4532179 (-)
RNA-Seq Expression	Cp4.1LG20g06680
Synteny	Cp4.1LG20g06680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATTGCACCAATTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCAAGAATTTAGTGCTTTCTAATCTTCCTAAACTCAACCCATTCAAATGTTTCTTCTCCGCCGCAAACTACGGCACTGGTTCGCCTCCTTGTTCCTTGACAGAGTCGGATTCGGCCGCCGCTGCCGCCGTCCCTTTTACCGGTGTCCTTCAAGATGAAGACCTTCTTCGCAAGACCCACATTTCTTCTTCTGAAACTTCCACTAGTTCCACTGGGCTCTATGTTCTGGACCTCATAAATCATGGTAAATTAGAACCCGAACGAACGCTTTACAGTAAAATGCTGAACAAGTGTACTCTCTTGCGCAAACTCAAGCTGGGCAGAGTCATCCACTCCCACATCCAGGGCTCTACGTTTGAGAATGATCTTGTAATTCAGAATTCTATCTTAAATATGTACGCCAAATGTGGCAGTCTTGAGGAGGCACACAACCTGTTTGATAAAATGCCTACAAGAGATATGGTTAGTTGGACCGTGTTGATTAGTGGCTATTCTCAGAGTGGGCGTGCGTTTGAAGCTCTTGGCTTGTTCCCTCAGATGTTCCACCAGGGCTTCCAACCCAATGAGTTCACTTTGTCTAGCTTGTTGAAGGCTTCTGGAGCTAGCCCTAGTGATGACCATGGCAGGCAACTTCATGCATTTTCTCTCAAATATGGCTTTGATATGAATGTTCATGTGGGAAGTTCATTGCTCGATATGTATGCTAGGTGGGGGCATATGCAAGAAGCCGAAGCGATTTTTAACGGGTTGGCTGCGAAAAACGTGGTGTCTTGGAATGCTCTGATTGCTGGTCATGCTCGGAAGGGTGAAGGGGAGCATGTGATGAAACTGTTTAGGCAGATGCTAAGGCACAATTTCGAACCTACGCATTTTACATATTCCAGTGTTTTTACTGCTTGTGCTAGCTCTGGATCTTTCGAGCAAGGCAAATGGGTTCATGCCCATGTTATAAAATCTGGGGGACAACCGGTTGCCTATATTGGAAACACTCTCATTGACATGTATGCCAAATCAGGCAGCATCAAGGATGCAAAGAAGGTCTTCCAGAGGTTGGTTAAACAGGACGTCGTTTCGTGGAACTCGATTATTTCTGGATATGCACAACATGGATTGGGAGCTGAAGCTTTACAGCTATTTGAGGAGATGCTAAAGGCCAAAGTTCAACCTAATGAAATTACTTTCCTCTCTGTTCTTACTGCTTGTAGCCATTCAGGGCTTCTAGATGAAGGGCAATATTATTTCGAACTAATGAAGAAATACGAGATCGAACCACAGGTTTCACACCATGTGACAGTTGTTGATCTATTAGGTCGAGCAGGTCGACTTGATGAAGCCAACAAGTTCATAAAGGAAATGCCTATCGAACCTACCGCAGCTGTCTGGGGAGCCTTGCTTGGTGCTTGCAGGATGCATAAGAACATGGATTTGGGTGCTTACGCTGCCGAACGGATTTTCGAGCTTGACCCTCATGACTCAGGTCCTCATGTACTGTTATCTAATATTTATGCTTCTGCTGGTAGATTAAATGATGCAGCTAATGTAAGGAAGATGATGAAAGAGAGTGGAGTTAAGAAAGAACCTGCCTGCAGTTGGGTTGAAATTGAGAATGAAGTTCATATGTTCGTGGCAAATGATGAATCACATCCAATGAGAGAAGAAATCCAGAAGATGTGGGAGAAAATAAGTGGAAAGATTAAAGAGATTGGGTATGTACCAGACACAAGCCATGTGCTTTTCTTCATGGACCAGCAGGACAGAGAAGTAAAGCTGCAATATCATAGTGAGAAGCTAGCATTAGCATTTTCAGTATTGAAAACTCCTCCTGGATTCACTATTAGGATCAAGAAGAACATTAGAATCTGTGGTGACTGCCATTCAGCATTCAAGTTTGCTTCGAAAGTCTTGGGAAGAGAAATCATTGTAAGAGATACCAATAGATTTCATCACTTCCTTGATGGCTTGTGTTCTTGCAGGGACTATTGGTAGAGCTATTAGCAGTGTACAAGTTCTTCATTACTAAGATCTGTCAATTTCTACCCTCAAGAAGTGTTCTAATAAAAGATTCGAGATCTTCGGATATACCTTTCGAAGGCTCGAGTTCAAACTTACCAAGAAGCCCAAGACCCAAAGGTTGGTTATAGAATTTTTGAACTCATATTCTTATGATTTTCTCATGGTAGATGCTACAAGAATACAGTAG

mRNA sequence

ATGAAAATTGCACCAATTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCAAGAATTTAGTGCTTTCTAATCTTCCTAAACTCAACCCATTCAAATGTTTCTTCTCCGCCGCAAACTACGGCACTGGTTCGCCTCCTTGTTCCTTGACAGAGTCGGATTCGGCCGCCGCTGCCGCCGTCCCTTTTACCGGTGTCCTTCAAGATGAAGACCTTCTTCGCAAGACCCACATTTCTTCTTCTGAAACTTCCACTAGTTCCACTGGGCTCTATGTTCTGGACCTCATAAATCATGGTAAATTAGAACCCGAACGAACGCTTTACAGTAAAATGCTGAACAAGTGTACTCTCTTGCGCAAACTCAAGCTGGGCAGAGTCATCCACTCCCACATCCAGGGCTCTACGTTTGAGAATGATCTTGTAATTCAGAATTCTATCTTAAATATGTACGCCAAATGTGGCAGTCTTGAGGAGGCACACAACCTGTTTGATAAAATGCCTACAAGAGATATGGTTAGTTGGACCGTGTTGATTAGTGGCTATTCTCAGAGTGGGCGTGCGTTTGAAGCTCTTGGCTTGTTCCCTCAGATGTTCCACCAGGGCTTCCAACCCAATGAGTTCACTTTGTCTAGCTTGTTGAAGGCTTCTGGAGCTAGCCCTAGTGATGACCATGGCAGGCAACTTCATGCATTTTCTCTCAAATATGGCTTTGATATGAATGTTCATGTGGGAAGTTCATTGCTCGATATGTATGCTAGGTGGGGGCATATGCAAGAAGCCGAAGCGATTTTTAACGGGTTGGCTGCGAAAAACGTGGTGTCTTGGAATGCTCTGATTGCTGGTCATGCTCGGAAGGATGCTACAAGAATACAGTAG

Coding sequence (CDS)

ATGAAAATTGCACCAATTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCAAGAATTTAGTGCTTTCTAATCTTCCTAAACTCAACCCATTCAAATGTTTCTTCTCCGCCGCAAACTACGGCACTGGTTCGCCTCCTTGTTCCTTGACAGAGTCGGATTCGGCCGCCGCTGCCGCCGTCCCTTTTACCGGTGTCCTTCAAGATGAAGACCTTCTTCGCAAGACCCACATTTCTTCTTCTGAAACTTCCACTAGTTCCACTGGGCTCTATGTTCTGGACCTCATAAATCATGGTAAATTAGAACCCGAACGAACGCTTTACAGTAAAATGCTGAACAAGTGTACTCTCTTGCGCAAACTCAAGCTGGGCAGAGTCATCCACTCCCACATCCAGGGCTCTACGTTTGAGAATGATCTTGTAATTCAGAATTCTATCTTAAATATGTACGCCAAATGTGGCAGTCTTGAGGAGGCACACAACCTGTTTGATAAAATGCCTACAAGAGATATGGTTAGTTGGACCGTGTTGATTAGTGGCTATTCTCAGAGTGGGCGTGCGTTTGAAGCTCTTGGCTTGTTCCCTCAGATGTTCCACCAGGGCTTCCAACCCAATGAGTTCACTTTGTCTAGCTTGTTGAAGGCTTCTGGAGCTAGCCCTAGTGATGACCATGGCAGGCAACTTCATGCATTTTCTCTCAAATATGGCTTTGATATGAATGTTCATGTGGGAAGTTCATTGCTCGATATGTATGCTAGGTGGGGGCATATGCAAGAAGCCGAAGCGATTTTTAACGGGTTGGCTGCGAAAAACGTGGTGTCTTGGAATGCTCTGATTGCTGGTCATGCTCGGAAGGATGCTACAAGAATACAGTAG

Protein sequence

MKIAPISSSSSSSSSSSSSLKNLVLSNLPKLNPFKCFFSAANYGTGSPPCSLTESDSAAAAAVPFTGVLQDEDLLRKTHISSSETSTSSTGLYVLDLINHGKLEPERTLYSKMLNKCTLLRKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRDMVSWTVLISGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDDHGRQLHAFSLKYGFDMNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHARKDATRIQ

Homology

[Close]

BLAST of Cp4.1LG20g06680 vs. ExPASy Swiss-Prot
Match: Q9LIQ7 (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H87 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 6.3e-56
Identity = 103/185 (55.68%), Postives = 135/185 (72.97%), Query Frame = 0


Query: 106 ERTLYSKMLNKCTLLRKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLF 165
           +R  Y+ +L KCT+ + L  GR++H+HI  S F +D+V+ N++LNMYAKCGSLEEA  +F
Sbjct: 59  DRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVF 118

Query: 166 DKMPTRDMVSWTVLISGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDD 225
           +KMP RD V+WT LISGYSQ  R  +AL  F QM   G+ PNEFTLSS++KA+ A     
Sbjct: 119 EKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGC 178

Query: 226 HGRQLHAFSLKYGFDMNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHA 285
            G QLH F +K GFD NVHVGS+LLD+Y R+G M +A+ +F+ L ++N VSWNALIAGHA
Sbjct: 179 CGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHA 238

Query: 286 RKDAT 291
           R+  T
Sbjct: 239 RRSGT 243

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BLAST of Cp4.1LG20g06680 vs. ExPASy Swiss-Prot
Match: A8MQA3 (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 152.5 bits (384), Expect = 7.3e-36
Identity = 70/185 (37.84%), Postives = 119/185 (64.32%), Query Frame = 0


Query: 101 GKLEPERTLYSKMLNKCTLLRKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEE 160
           G +EP+   Y  ++   T +  ++LG  IHS +  S F + + +QNS+L++YA CG +  
Sbjct: 115 GLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVAS 174

Query: 161 AHNLFDKMPTRDMVSWTVLISGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGA 220
           A+ +FDKMP +D+V+W  +I+G++++G+  EAL L+ +M  +G +P+ FT+ SLL A   
Sbjct: 175 AYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAK 234

Query: 221 SPSDDHGRQLHAFSLKYGFDMNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNAL 280
             +   G+++H + +K G   N+H  + LLD+YAR G ++EA+ +F+ +  KN VSW +L
Sbjct: 235 IGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSL 294

Query: 281 IAGHA 286
           I G A
Sbjct: 295 IVGLA 299

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BLAST of Cp4.1LG20g06680 vs. ExPASy Swiss-Prot
Match: Q9LIC3 (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H85 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.5e-33
Identity = 82/229 (35.81%), Postives = 134/229 (58.52%), Query Frame = 0


Query: 73  DLLRKTHISSSETSTS---STGLYVLDLINHGKLE----------PERTL--YSKMLNKC 132
           +L+R  H S S + T+    T L +  L ++G+L+          PE     Y  +LN C
Sbjct: 3   NLMRLIHRSFSSSPTNYVLQTILPISQLCSNGRLQEALLEMAMLGPEMGFHGYDALLNAC 62

Query: 133 TLLRKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRDMVSWT 192
              R L+ G+ +H+H+  + +     ++  +L  Y KC  LE+A  + D+MP +++VSWT
Sbjct: 63  LDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWT 122

Query: 193 VLISGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDDHGRQLHAFSLKY 252
            +IS YSQ+G + EAL +F +M     +PNEFT +++L +   +     G+Q+H   +K+
Sbjct: 123 AMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKW 182

Query: 253 GFDMNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHAR 287
            +D ++ VGSSLLDMYA+ G ++EA  IF  L  ++VVS  A+IAG+A+
Sbjct: 183 NYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQ 231

[Close]

BLAST of Cp4.1LG20g06680 vs. ExPASy Swiss-Prot
Match: Q9LFI1 (Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E86 PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.4e-33
Identity = 67/177 (37.85%), Postives = 111/177 (62.71%), Query Frame = 0


Query: 110 YSKMLNKCTLLRKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMP 169
           Y  ++  C+  R L  GR IH HI  S  + D ++ N IL+MY KCGSL +A  +FD MP
Sbjct: 70  YISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMP 129

Query: 170 TRDMVSWTVLISGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDDHGRQ 229
            R++VS+T +I+GYSQ+G+  EA+ L+ +M  +   P++F   S++KA  +S     G+Q
Sbjct: 130 ERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQ 189

Query: 230 LHAFSLKYGFDMNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHAR 287
           LHA  +K     ++   ++L+ MY R+  M +A  +F G+  K+++SW+++IAG ++
Sbjct: 190 LHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQ 246

[Close]

BLAST of Cp4.1LG20g06680 vs. ExPASy Swiss-Prot
Match: Q3E6Q1 (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.7e-32
Identity = 76/240 (31.67%), Postives = 131/240 (54.58%), Query Frame = 0


Query: 50  CSLTESDSAAAAAVPFTGVLQDEDLLRKTHISS-SETSTSSTGLYVLDLINHGKLEPERT 109
           C     D AA    P    L   ++L  T +   ++ S     L     + +  +EP   
Sbjct: 80  CRYGSVDEAARVFEPIDSKL---NVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVY 139

Query: 110 LYSKMLNKCTLLRKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKM 169
            ++ +L  C    +L++G+ IH  +  S F  DL     + NMYAKC  + EA  +FD+M
Sbjct: 140 NFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRM 199

Query: 170 PTRDMVSWTVLISGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDDHGR 229
           P RD+VSW  +++GYSQ+G A  AL +   M  +  +P+  T+ S+L A  A      G+
Sbjct: 200 PERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGK 259

Query: 230 QLHAFSLKYGFDMNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHARKD 289
           ++H ++++ GFD  V++ ++L+DMYA+ G ++ A  +F+G+  +NVVSWN++I  + + +
Sbjct: 260 EIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNE 316

[Close]

BLAST of Cp4.1LG20g06680 vs. NCBI nr
Match: XP_023520189.1 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 564 bits (1453), Expect = 2.14e-196
Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 0


Query: 1   MKIAPISSSSSSSSSSSSSLKNLVLSNLPKLNPFKCFFSAANYGTGSPPCSLTESDSAAA 60
           MKIAPISSSSSSSSSSSSSLKNLVLSNLPKLNPFKCFFSAANYGTGSPPCSLTESDSAAA
Sbjct: 1   MKIAPISSSSSSSSSSSSSLKNLVLSNLPKLNPFKCFFSAANYGTGSPPCSLTESDSAAA 60

Query: 61  AAVPFTGVLQDEDLLRKTHISSSETSTSSTGLYVLDLINHGKLEPERTLYSKMLNKCTLL 120
           AAVPFTGVLQDEDLLRKTHISSSETSTSSTGLYVLDLINHGKLEPERTLYSKMLNKCTLL
Sbjct: 61  AAVPFTGVLQDEDLLRKTHISSSETSTSSTGLYVLDLINHGKLEPERTLYSKMLNKCTLL 120

Query: 121 RKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRDMVSWTVLI 180
           RKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRDMVSWTVLI
Sbjct: 121 RKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRDMVSWTVLI 180

Query: 181 SGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDDHGRQLHAFSLKYGFD 240
           SGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDDHGRQLHAFSLKYGFD
Sbjct: 181 SGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDDHGRQLHAFSLKYGFD 240

Query: 241 MNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHARK 287
           MNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHARK
Sbjct: 241 MNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHARK 287

[Close]

BLAST of Cp4.1LG20g06680 vs. NCBI nr
Match: XP_022927532.1 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Cucurbita moschata])

HSP 1 Score: 533 bits (1373), Expect = 2.12e-184
Identity = 271/287 (94.43%), Postives = 274/287 (95.47%), Query Frame = 0


Query: 1   MKIAPISSSSSSSSSSSSSLKNLVLSNLPKLNPFKCFFSAANYGTGSPPCSLTESDSAAA 60
           MKIAPI         SSSSLKNLVLS+LPKL PFK FFSAANYGTG PPCS TESDSAAA
Sbjct: 1   MKIAPI---------SSSSLKNLVLSDLPKLKPFKWFFSAANYGTGPPPCSFTESDSAAA 60

Query: 61  AAVPFTGVLQDEDLLRKTHISSSETSTSSTGLYVLDLINHGKLEPERTLYSKMLNKCTLL 120
           AAVPFTGVLQDEDLLRKTH+SSSETST+STGLYVLDLINHGKLEPERTLYSKMLNKCTLL
Sbjct: 61  AAVPFTGVLQDEDLLRKTHMSSSETSTNSTGLYVLDLINHGKLEPERTLYSKMLNKCTLL 120

Query: 121 RKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRDMVSWTVLI 180
           RKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRDMVSWTVLI
Sbjct: 121 RKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRDMVSWTVLI 180

Query: 181 SGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDDHGRQLHAFSLKYGFD 240
           SGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDDHGRQLHAFSLKYGFD
Sbjct: 181 SGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDDHGRQLHAFSLKYGFD 240

Query: 241 MNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHARK 287
           MNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHARK
Sbjct: 241 MNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHARK 278

[Close]

BLAST of Cp4.1LG20g06680 vs. NCBI nr
Match: KAG6583676.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019337.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 533 bits (1373), Expect = 2.12e-184
Identity = 271/287 (94.43%), Postives = 274/287 (95.47%), Query Frame = 0


Query: 1   MKIAPISSSSSSSSSSSSSLKNLVLSNLPKLNPFKCFFSAANYGTGSPPCSLTESDSAAA 60
           MKIAPI         SSSSLKNLVLS+LPKL PFK FFSAANYGTG PPCS TESDSAAA
Sbjct: 1   MKIAPI---------SSSSLKNLVLSDLPKLKPFKWFFSAANYGTGPPPCSFTESDSAAA 60

Query: 61  AAVPFTGVLQDEDLLRKTHISSSETSTSSTGLYVLDLINHGKLEPERTLYSKMLNKCTLL 120
           AAVPFTGVLQDEDLLRKTH+SSSETST+STGLYVLDLINHGKLEPERTLYSKMLNKCTLL
Sbjct: 61  AAVPFTGVLQDEDLLRKTHMSSSETSTNSTGLYVLDLINHGKLEPERTLYSKMLNKCTLL 120

Query: 121 RKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRDMVSWTVLI 180
           RKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRDMVSWTVLI
Sbjct: 121 RKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRDMVSWTVLI 180

Query: 181 SGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDDHGRQLHAFSLKYGFD 240
           SGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDDHGRQLHAFSLKYGFD
Sbjct: 181 SGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDDHGRQLHAFSLKYGFD 240

Query: 241 MNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHARK 287
           MNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHARK
Sbjct: 241 MNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHARK 278

[Close]

BLAST of Cp4.1LG20g06680 vs. NCBI nr
Match: XP_022973115.1 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Cucurbita maxima])

HSP 1 Score: 526 bits (1356), Expect = 9.97e-182
Identity = 271/294 (92.18%), Postives = 275/294 (93.54%), Query Frame = 0


Query: 1   MKIAPISSSSSSSSSSSSSLKNLVLSNLPKLNPFKCFFSAANYGTGSPPCSLTESDSA-- 60
           MKIAPI         S SSL+NLVLS+LPKL PFKCFFSAANYGTGSPPCSLTESDSA  
Sbjct: 1   MKIAPI---------SPSSLQNLVLSDLPKLKPFKCFFSAANYGTGSPPCSLTESDSAEG 60

Query: 61  -----AAAAVPFTGVLQDEDLLRKTHISSSETSTSSTGLYVLDLINHGKLEPERTLYSKM 120
                AAAAVPFTGVLQDEDLLRKTHISSSETSTSSTGLYVLDLINHGKLEPERTLYSKM
Sbjct: 61  RDWNAAAAAVPFTGVLQDEDLLRKTHISSSETSTSSTGLYVLDLINHGKLEPERTLYSKM 120

Query: 121 LNKCTLLRKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRDM 180
           LNKCT LRKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRDM
Sbjct: 121 LNKCTHLRKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRDM 180

Query: 181 VSWTVLISGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDDHGRQLHAF 240
           VSWTVLISGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSD+HGRQLHAF
Sbjct: 181 VSWTVLISGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDEHGRQLHAF 240

Query: 241 SLKYGFDMNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHARK 287
           SLKYGF+MNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHARK
Sbjct: 241 SLKYGFNMNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHARK 285

[Close]

BLAST of Cp4.1LG20g06680 vs. NCBI nr
Match: XP_022142695.1 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Momordica charantia] >XP_022142696.1 pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Momordica charantia] >XP_022142697.1 pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Momordica charantia] >XP_022142698.1 pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Momordica charantia] >XP_022142700.1 pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Momordica charantia] >XP_022142701.1 pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Momordica charantia] >XP_022142702.1 pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Momordica charantia])

HSP 1 Score: 436 bits (1122), Expect = 2.25e-146
Identity = 228/295 (77.29%), Postives = 250/295 (84.75%), Query Frame = 0


Query: 1   MKIAPISSSSSSSSSSSSSLKNLVLSNLPKLNPFKCFFSAANYGTG-SPPCSLTESDSA- 60
           MKIAP+         S SSLKNLV S+ PKL P KCFF AANYG G + PC+ +ESD+A 
Sbjct: 1   MKIAPL---------SLSSLKNLVFSD-PKLKPLKCFFFAANYGAGPAAPCAFSESDTAE 60

Query: 61  ------AAAAVPFTGVLQDEDLLRKTHISSSETSTSSTGLYVLDLINHGKLEPERTLYSK 120
                 A AA PF GVLQDEDLLRKTHIS  +TST STGLYVLDL+NHG LEP+RTLYSK
Sbjct: 61  GREWNAAVAATPFNGVLQDEDLLRKTHISP-QTSTPSTGLYVLDLLNHGSLEPDRTLYSK 120

Query: 121 MLNKCTLLRKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRD 180
           MLNKCT LRKLK GRVIH+HIQGS+FE+DLV+QN ILNMYAKCGS+EEA N+FDKMPTRD
Sbjct: 121 MLNKCTHLRKLKQGRVIHAHIQGSSFESDLVLQNFILNMYAKCGSVEEARNVFDKMPTRD 180

Query: 181 MVSWTVLISGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDDHGRQLHA 240
           MVSWTV+ISG+SQSG A EAL LFPQM HQGFQPNEFTLSSLLKASG  PSDDHGRQLHA
Sbjct: 181 MVSWTVMISGFSQSGLASEALALFPQMLHQGFQPNEFTLSSLLKASGTGPSDDHGRQLHA 240

Query: 241 FSLKYGFDMNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHARK 287
           FSLKYG+D+NVHVGSSLLDMYAR GHM+EA+AIF+GLA KNVVSWNALIAGHARK
Sbjct: 241 FSLKYGYDVNVHVGSSLLDMYARCGHMREAKAIFDGLAGKNVVSWNALIAGHARK 284

[Close]

BLAST of Cp4.1LG20g06680 vs. ExPASy TrEMBL
Match: A0A6J1EHG0 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111434330 PE=3 SV=1)

HSP 1 Score: 533 bits (1373), Expect = 1.03e-184
Identity = 271/287 (94.43%), Postives = 274/287 (95.47%), Query Frame = 0


Query: 1   MKIAPISSSSSSSSSSSSSLKNLVLSNLPKLNPFKCFFSAANYGTGSPPCSLTESDSAAA 60
           MKIAPI         SSSSLKNLVLS+LPKL PFK FFSAANYGTG PPCS TESDSAAA
Sbjct: 1   MKIAPI---------SSSSLKNLVLSDLPKLKPFKWFFSAANYGTGPPPCSFTESDSAAA 60

Query: 61  AAVPFTGVLQDEDLLRKTHISSSETSTSSTGLYVLDLINHGKLEPERTLYSKMLNKCTLL 120
           AAVPFTGVLQDEDLLRKTH+SSSETST+STGLYVLDLINHGKLEPERTLYSKMLNKCTLL
Sbjct: 61  AAVPFTGVLQDEDLLRKTHMSSSETSTNSTGLYVLDLINHGKLEPERTLYSKMLNKCTLL 120

Query: 121 RKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRDMVSWTVLI 180
           RKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRDMVSWTVLI
Sbjct: 121 RKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRDMVSWTVLI 180

Query: 181 SGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDDHGRQLHAFSLKYGFD 240
           SGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDDHGRQLHAFSLKYGFD
Sbjct: 181 SGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDDHGRQLHAFSLKYGFD 240

Query: 241 MNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHARK 287
           MNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHARK
Sbjct: 241 MNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHARK 278

[Close]

BLAST of Cp4.1LG20g06680 vs. ExPASy TrEMBL
Match: A0A6J1IAI9 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111471639 PE=3 SV=1)

HSP 1 Score: 526 bits (1356), Expect = 4.83e-182
Identity = 271/294 (92.18%), Postives = 275/294 (93.54%), Query Frame = 0


Query: 1   MKIAPISSSSSSSSSSSSSLKNLVLSNLPKLNPFKCFFSAANYGTGSPPCSLTESDSA-- 60
           MKIAPI         S SSL+NLVLS+LPKL PFKCFFSAANYGTGSPPCSLTESDSA  
Sbjct: 1   MKIAPI---------SPSSLQNLVLSDLPKLKPFKCFFSAANYGTGSPPCSLTESDSAEG 60

Query: 61  -----AAAAVPFTGVLQDEDLLRKTHISSSETSTSSTGLYVLDLINHGKLEPERTLYSKM 120
                AAAAVPFTGVLQDEDLLRKTHISSSETSTSSTGLYVLDLINHGKLEPERTLYSKM
Sbjct: 61  RDWNAAAAAVPFTGVLQDEDLLRKTHISSSETSTSSTGLYVLDLINHGKLEPERTLYSKM 120

Query: 121 LNKCTLLRKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRDM 180
           LNKCT LRKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRDM
Sbjct: 121 LNKCTHLRKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRDM 180

Query: 181 VSWTVLISGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDDHGRQLHAF 240
           VSWTVLISGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSD+HGRQLHAF
Sbjct: 181 VSWTVLISGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDEHGRQLHAF 240

Query: 241 SLKYGFDMNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHARK 287
           SLKYGF+MNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHARK
Sbjct: 241 SLKYGFNMNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHARK 285

[Close]

BLAST of Cp4.1LG20g06680 vs. ExPASy TrEMBL
Match: A0A6J1CNX3 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111012750 PE=3 SV=1)

HSP 1 Score: 436 bits (1122), Expect = 1.09e-146
Identity = 228/295 (77.29%), Postives = 250/295 (84.75%), Query Frame = 0


Query: 1   MKIAPISSSSSSSSSSSSSLKNLVLSNLPKLNPFKCFFSAANYGTG-SPPCSLTESDSA- 60
           MKIAP+         S SSLKNLV S+ PKL P KCFF AANYG G + PC+ +ESD+A 
Sbjct: 1   MKIAPL---------SLSSLKNLVFSD-PKLKPLKCFFFAANYGAGPAAPCAFSESDTAE 60

Query: 61  ------AAAAVPFTGVLQDEDLLRKTHISSSETSTSSTGLYVLDLINHGKLEPERTLYSK 120
                 A AA PF GVLQDEDLLRKTHIS  +TST STGLYVLDL+NHG LEP+RTLYSK
Sbjct: 61  GREWNAAVAATPFNGVLQDEDLLRKTHISP-QTSTPSTGLYVLDLLNHGSLEPDRTLYSK 120

Query: 121 MLNKCTLLRKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRD 180
           MLNKCT LRKLK GRVIH+HIQGS+FE+DLV+QN ILNMYAKCGS+EEA N+FDKMPTRD
Sbjct: 121 MLNKCTHLRKLKQGRVIHAHIQGSSFESDLVLQNFILNMYAKCGSVEEARNVFDKMPTRD 180

Query: 181 MVSWTVLISGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDDHGRQLHA 240
           MVSWTV+ISG+SQSG A EAL LFPQM HQGFQPNEFTLSSLLKASG  PSDDHGRQLHA
Sbjct: 181 MVSWTVMISGFSQSGLASEALALFPQMLHQGFQPNEFTLSSLLKASGTGPSDDHGRQLHA 240

Query: 241 FSLKYGFDMNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHARK 287
           FSLKYG+D+NVHVGSSLLDMYAR GHM+EA+AIF+GLA KNVVSWNALIAGHARK
Sbjct: 241 FSLKYGYDVNVHVGSSLLDMYARCGHMREAKAIFDGLAGKNVVSWNALIAGHARK 284

[Close]

BLAST of Cp4.1LG20g06680 vs. ExPASy TrEMBL
Match: A0A5D3CU56 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00540 PE=3 SV=1)

HSP 1 Score: 414 bits (1063), Expect = 8.74e-138
Identity = 208/263 (79.09%), Postives = 222/263 (84.41%), Query Frame = 0


Query: 30  KLNPFKCFFSAANYGTGSPPCSLTESDSAAA-----AAVPFTGVLQDEDLLRKTHISSSE 89
           KL   +CF  AA YGTG  PC+ TES+ A +     A  PFTGVLQDEDLLR THISSS+
Sbjct: 23  KLKTLRCFLFAAKYGTGLAPCAFTESNMAESQDWNPATAPFTGVLQDEDLLRTTHISSSD 82

Query: 90  TSTSSTGLYVLDLINHGKLEPERTLYSKMLNKCTLLRKLKLGRVIHSHIQGSTFENDLVI 149
            S+SSTGLYVLDLIN G LEPERTLYSKMLNKCT LRKLK GR IH+HIQ S FEND V+
Sbjct: 83  VSSSSTGLYVLDLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSAFENDPVL 142

Query: 150 QNSILNMYAKCGSLEEAHNLFDKMPTRDMVSWTVLISGYSQSGRAFEALGLFPQMFHQGF 209
            N ILNMYAKCGSLEEA +LFDKMPT+D VSWTVLISGYSQS RA EAL LFP+M H GF
Sbjct: 143 LNFILNMYAKCGSLEEAQDLFDKMPTKDRVSWTVLISGYSQSRRASEALALFPKMLHLGF 202

Query: 210 QPNEFTLSSLLKASGASPSDDHGRQLHAFSLKYGFDMNVHVGSSLLDMYARWGHMQEAEA 269
           QPNEFTLSSLLKASGA PSDDHGRQLHAFSLKYG+DMNVHVGSSLLDMYARWGHM+EA+ 
Sbjct: 203 QPNEFTLSSLLKASGAGPSDDHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWGHMREAKV 262

Query: 270 IFNGLAAKNVVSWNALIAGHARK 287
           IF  LAAKNVVSWNALIAGHARK
Sbjct: 263 IFKSLAAKNVVSWNALIAGHARK 285

[Close]

BLAST of Cp4.1LG20g06680 vs. ExPASy TrEMBL
Match: A0A1S3CMN0 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502212 PE=3 SV=1)

HSP 1 Score: 414 bits (1063), Expect = 9.26e-138
Identity = 208/263 (79.09%), Postives = 222/263 (84.41%), Query Frame = 0


Query: 30  KLNPFKCFFSAANYGTGSPPCSLTESDSAAA-----AAVPFTGVLQDEDLLRKTHISSSE 89
           KL   +CF  AA YGTG  PC+ TES+ A +     A  PFTGVLQDEDLLR THISSS+
Sbjct: 25  KLKTLRCFLFAAKYGTGLAPCAFTESNMAESQDWNPATAPFTGVLQDEDLLRTTHISSSD 84

Query: 90  TSTSSTGLYVLDLINHGKLEPERTLYSKMLNKCTLLRKLKLGRVIHSHIQGSTFENDLVI 149
            S+SSTGLYVLDLIN G LEPERTLYSKMLNKCT LRKLK GR IH+HIQ S FEND V+
Sbjct: 85  VSSSSTGLYVLDLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSAFENDPVL 144

Query: 150 QNSILNMYAKCGSLEEAHNLFDKMPTRDMVSWTVLISGYSQSGRAFEALGLFPQMFHQGF 209
            N ILNMYAKCGSLEEA +LFDKMPT+D VSWTVLISGYSQS RA EAL LFP+M H GF
Sbjct: 145 LNFILNMYAKCGSLEEAQDLFDKMPTKDRVSWTVLISGYSQSRRASEALALFPKMLHLGF 204

Query: 210 QPNEFTLSSLLKASGASPSDDHGRQLHAFSLKYGFDMNVHVGSSLLDMYARWGHMQEAEA 269
           QPNEFTLSSLLKASGA PSDDHGRQLHAFSLKYG+DMNVHVGSSLLDMYARWGHM+EA+ 
Sbjct: 205 QPNEFTLSSLLKASGAGPSDDHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWGHMREAKV 264

Query: 270 IFNGLAAKNVVSWNALIAGHARK 287
           IF  LAAKNVVSWNALIAGHARK
Sbjct: 265 IFKSLAAKNVVSWNALIAGHARK 287

[Close]

BLAST of Cp4.1LG20g06680 vs. TAIR 10
Match: AT3G24000.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 219.2 bits (557), Expect = 4.5e-57
Identity = 103/185 (55.68%), Postives = 135/185 (72.97%), Query Frame = 0


Query: 106 ERTLYSKMLNKCTLLRKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLF 165
           +R  Y+ +L KCT+ + L  GR++H+HI  S F +D+V+ N++LNMYAKCGSLEEA  +F
Sbjct: 59  DRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVF 118

Query: 166 DKMPTRDMVSWTVLISGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDD 225
           +KMP RD V+WT LISGYSQ  R  +AL  F QM   G+ PNEFTLSS++KA+ A     
Sbjct: 119 EKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGC 178

Query: 226 HGRQLHAFSLKYGFDMNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHA 285
            G QLH F +K GFD NVHVGS+LLD+Y R+G M +A+ +F+ L ++N VSWNALIAGHA
Sbjct: 179 CGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHA 238

Query: 286 RKDAT 291
           R+  T
Sbjct: 239 RRSGT 243

[Close]

BLAST of Cp4.1LG20g06680 vs. TAIR 10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 152.5 bits (384), Expect = 5.2e-37
Identity = 70/185 (37.84%), Postives = 119/185 (64.32%), Query Frame = 0


Query: 101 GKLEPERTLYSKMLNKCTLLRKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEE 160
           G +EP+   Y  ++   T +  ++LG  IHS +  S F + + +QNS+L++YA CG +  
Sbjct: 115 GLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVAS 174

Query: 161 AHNLFDKMPTRDMVSWTVLISGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGA 220
           A+ +FDKMP +D+V+W  +I+G++++G+  EAL L+ +M  +G +P+ FT+ SLL A   
Sbjct: 175 AYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAK 234

Query: 221 SPSDDHGRQLHAFSLKYGFDMNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNAL 280
             +   G+++H + +K G   N+H  + LLD+YAR G ++EA+ +F+ +  KN VSW +L
Sbjct: 235 IGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSL 294

Query: 281 IAGHA 286
           I G A
Sbjct: 295 IVGLA 299

[Close]

BLAST of Cp4.1LG20g06680 vs. TAIR 10
Match: AT3G13770.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 144.8 bits (364), Expect = 1.1e-34
Identity = 82/229 (35.81%), Postives = 134/229 (58.52%), Query Frame = 0


Query: 73  DLLRKTHISSSETSTS---STGLYVLDLINHGKLE----------PERTL--YSKMLNKC 132
           +L+R  H S S + T+    T L +  L ++G+L+          PE     Y  +LN C
Sbjct: 3   NLMRLIHRSFSSSPTNYVLQTILPISQLCSNGRLQEALLEMAMLGPEMGFHGYDALLNAC 62

Query: 133 TLLRKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRDMVSWT 192
              R L+ G+ +H+H+  + +     ++  +L  Y KC  LE+A  + D+MP +++VSWT
Sbjct: 63  LDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWT 122

Query: 193 VLISGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDDHGRQLHAFSLKY 252
            +IS YSQ+G + EAL +F +M     +PNEFT +++L +   +     G+Q+H   +K+
Sbjct: 123 AMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKW 182

Query: 253 GFDMNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHAR 287
            +D ++ VGSSLLDMYA+ G ++EA  IF  L  ++VVS  A+IAG+A+
Sbjct: 183 NYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQ 231

[Close]

BLAST of Cp4.1LG20g06680 vs. TAIR 10
Match: AT4G21065.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 143.7 bits (361), Expect = 2.4e-34
Identity = 65/163 (39.88%), Postives = 109/163 (66.87%), Query Frame = 0


Query: 123 LKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRDMVSWTVLISG 182
           ++LG  IHS +  S F + + +QNS+L++YA CG +  A+ +FDKMP +D+V+W  +I+G
Sbjct: 4   VRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVING 63

Query: 183 YSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDDHGRQLHAFSLKYGFDMN 242
           ++++G+  EAL L+ +M  +G +P+ FT+ SLL A     +   G+++H + +K G   N
Sbjct: 64  FAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRN 123

Query: 243 VHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHA 286
           +H  + LLD+YAR G ++EA+ +F+ +  KN VSW +LI G A
Sbjct: 124 LHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLA 166

[Close]

BLAST of Cp4.1LG20g06680 vs. TAIR 10
Match: AT3G53360.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 143.3 bits (360), Expect = 3.1e-34
Identity = 67/177 (37.85%), Postives = 111/177 (62.71%), Query Frame = 0


Query: 110 YSKMLNKCTLLRKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMP 169
           Y  ++  C+  R L  GR IH HI  S  + D ++ N IL+MY KCGSL +A  +FD MP
Sbjct: 70  YISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMP 129

Query: 170 TRDMVSWTVLISGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDDHGRQ 229
            R++VS+T +I+GYSQ+G+  EA+ L+ +M  +   P++F   S++KA  +S     G+Q
Sbjct: 130 ERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQ 189

Query: 230 LHAFSLKYGFDMNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIAGHAR 287
           LHA  +K     ++   ++L+ MY R+  M +A  +F G+  K+++SW+++IAG ++
Sbjct: 190 LHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQ 246

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g06680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LIQ7	6.3e-56	55.68	Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidop...	[more]
A8MQA3	7.3e-36	37.84	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX...	[more]
Q9LIC3	1.5e-33	35.81	Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS...	[more]
Q9LFI1	4.4e-33	37.85	Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidop...	[more]
Q3E6Q1	1.7e-32	31.67	Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop...	[more]

BLAST of Cp4.1LG20g06680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023520189.1	2.14e-196	100.00	pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Cucurbita ...	[more]
XP_022927532.1	2.12e-184	94.43	pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Cucurbita ...	[more]
KAG6583676.1	2.12e-184	94.43	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_022973115.1	9.97e-182	92.18	pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Cucurbita ...	[more]
XP_022142695.1	2.25e-146	77.29	pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Momordica ...	[more]

BLAST of Cp4.1LG20g06680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EHG0	1.03e-184	94.43	pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Cucurbit...	[more]
A0A6J1IAI9	4.83e-182	92.18	pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Cucurbit...	[more]
A0A6J1CNX3	1.09e-146	77.29	pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Momordic...	[more]
A0A5D3CU56	8.74e-138	79.09	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3CMN0	9.26e-138	79.09	pentatricopeptide repeat-containing protein At3g24000, mitochondrial isoform X1 ...	[more]

BLAST of Cp4.1LG20g06680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24000.1	4.5e-57	55.68	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G21065.1	5.2e-37	37.84	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G13770.1	1.1e-34	35.81	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G21065.2	2.4e-34	39.88	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G53360.1	3.1e-34	37.85	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 172..217 e-value: 2.6E-9 score: 37.1
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 247..268 e-value: 0.049 score: 13.9 coord: 146..171 e-value: 7.8E-5 score: 22.7
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 174..208 e-value: 1.8E-5 score: 22.6 coord: 144..173 e-value: 5.1E-5 score: 21.2
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 141..171 score: 9.382931
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 172..206 score: 11.728648
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 83..225 e-value: 9.6E-26 score: 92.9
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 226..291 e-value: 3.7E-10 score: 41.4
None	No IPR available	PANTHER	PTHR47925:SF20	SUBFAMILY NOT NAMED	coord: 77..217 coord: 102..286
None	No IPR available	PANTHER	PTHR47925	OS01G0913400 PROTEIN-RELATED	coord: 77..217 coord: 102..286

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g06680.1	Cp4.1LG20g06680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding