Cp4.1LG20g06600 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG20g06600
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	heterogeneous nuclear ribonucleoprotein 1
Location	Cp4.1LG20: 4190010 .. 4194009 (+)
RNA-Seq Expression	Cp4.1LG20g06600
Synteny	Cp4.1LG20g06600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTTATTGATGCTGTCTGTTTGATTTAGCTTGCATTGTGATGATGTTTCTGAAATGAATACTTCCTGTTTCATCGAATCCATGTTTTCTGTAGCTTTTTTAGGATTGATCGGTTTTGTGCTTGTTCTTCTGAAGGCGAAGGGGTTAGACTTTAAGATACCTGATTGTTTGTGTGGTGTATGTGTTTGAATTGTTGAATGATATTGATGGGGTTGGTTGGAATGGATTTGTAGAGTGGGCATGGATCCTGGCAAGCTTTTCATTGGTGGGATTTCGTGGGACACGGATGAAGATCGTCTTCGAGAGTATTTTCAGAGCTTTGGGGAAGTGGTGGAGGTGATGATCATGAGGGATCGGACCACTGGCCGTGCTCGTGGCTTTGGTTTCGTCGTCTTTGCTGACCCTGTTGTTGCAGCAAGAGTTGTATTGGAAAAGCATGTGATTGATGGAAGAACTGTAAGTCTTGTCTATTGTTCTTGATTTCATTGATCTTTCGATTTGTATTGGAAGCTTTAGATGTCGTTCATGGCTTGTTCGAGTTTGTGTTCTGATTCGATTTTGTGTGTTAATATGCTCGTGGAAGGATCAAGGTTTTCCAGATGTTCTTTGGCGTTCATCGTGATTCGAACTTATTACAATTCTTTAGTTTTTGGGGAAGTATGATGCCTATGTATGTTCTCGGAATGTTAATGGGTTCGCTTAGAATCAATTGCTTATATAACGTGAAAAATAACGTTTAAGAGTTTGCTCCTTGGCTTTATTAGAAAGTTTGAATATTTGAAGTCCGAGATCCCGTATGGGTTGGGGAGGAGAATGAAACATTCTTTATAAGCGGAGGAAACCTCTCCCTAGCATACGCGTTTTAAAAACCTTGACACCGGGCGGCGTGCCAGTGAGGATGTTGGACTCCGAAGGGGGGTGGATTGTGAGATCCCACATTGGTTGAGGAGAAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAAGACAATATCTGCTGGTGGTGGACTTGGGCTGTTACATAAAGAATGCTGTAGATAAATCCTAATGCTGTGCCAATTGTTATCTTATAAAGTTCGTGTATGCACGGACACTAGGATTTATGTGTGATGATCACCACTGGTATTACAATGATATGTTCCGTTGCATCTCGACTTCTATTTGTACCGGTAATGAGAGTAAACTCTATCATTTTCATGTTTAGATGTTTATTTTTTTCAGGTTGAAGCAAAGAAGGCTGTTCCTCGAGACGATCAAAACGTTTTGAGCAGGAACAATACCGGTATCCTTGGGTCACCAGGTCCTACTCGCACGAAAAAGATATTCGTAGGAGGTTTGGCATCAACTGTTACGGAGAGTGACTTCAAAACATATTTTGATCAGTTTGGAACAATCACAGACGTCGTGGTGATGTACGATCATAATACTCAGAGACCGAGAGGTTTCGGATTTATCACTTACGAGTCCGAGGAATCGGTGGAGAAAGTTTTATACAAAACTTTTCATGAACTCAATGGTAAAATGGTTGAGGTTAAGAGGGCTGTTCCAAAGGAATCATCACCAGTGCCAAACCGAAGTCAATTAGGTGCATACCCTTATGGTTTTGGTAGAGTTGGTAGCTATTTAAATGGCTATAATCAAGGATATAACCCGACCTCGGTTGGGGCATATGGATTGAGATCTGATGATAGGTTTAGTCCTGTTACAGTTGGTCGGGGTGGACTTTCTCCGATCAGTCCTGGTTATGGAATCGGGCTAAATCTCGAAACAGGGTTGAACCCAAACTATGGGACAGGTCTCAATGTTGGCTCTAACCTTAGCTATGGACGAGTAATGAGCCCCTCGTATGGTGGAAATTTGAATAGGTATGGTAGCCCGAACCCCATGGTGTATGGTGGTGGCAATGGAGGTAATGGTTCGATTTTAAGCTCGTCGGTTCAGAATCTGTGGGGAAACGTCGGGAACTCTGTTGGTACAAACTCGTCACACTTGAGGACTTTTCCTGGCTCTGGTGGTGTGCATACAGGAACTAATTCGTTGAACGGTATCGGAGGGCTTTGGGGTGCGTCTGCAAGTCTAGTTCATGGGGAACATTCTGGTTCTCCATTCAATGCTGTTAATCTCGACTTTGCGAGCGGTGATGGCAGCTTAACGTCGGGAACGACTGTAGGTTATGCTAGAAGCGTTGGAACTAATGTTTCCTCAGCATCTTTGTACTCTGCACCAAATATATATGATGAGGTTCATGGGAACAATGATGAAGGAAACTCATTTTATGGGCATTCCAGTTGGCAGTTGTTACCGACCGAGCTCGAGGATTCTTCGTCGGTTGGTTTCGGGCTTGGGAATGCTGCTTCGGATGTTATTAGTAGAAACAATGGTGGTTATACTGTCGGATACGGTGTTTCTAATAGACAATCTAATAGAGGTGAGTCTTTCCTTTTTCTAGTTTTATGATGAATGATCTTGTTTTTGTGGATTCCTAATGTTCTGTCCTCCTCTACGACCGGATAACGTTTGCTTTTTCTAGCTATATCCGCTTTTTCTAGCTATCCGATCATAGTTTTTAAGAAGTTGTTCGTAGTCCCTATTCCCTAAGCTTTTCAATGCAAGTTAGCTCACCGCTAGCAGATATTGTCCTCTTTGTTCCCATAAGGTTTTCAAAACATGTCAGCTAGGGAGAGGTTTCCATACCCTTATAGAGAACGTGTCGTTCTCTTCCCCAACCAACCGATGCAGGATCTCACAACCCACCCCCCTCCCCTTTCAGGGCCTAGTGTCCTCGCTGACACTCGTTCCCTTCACCAATCGATGTGGGACTCCTGAATCCACCCTCCTTCAGGGTCTAGCGTCCTTGCTACCACACCACCCCCCTTCCAGGTTCAGCCACCTCACTAGCACATCGCCCGATGTCTAGCTCTGATACCATTTGTAACAATCTAAGCCCACCACTAGCAAATATTGTGTTCTTTAGGCTTTCCCTTCCAGACTTCCCCTCAAGGTTTTTAAAACGCGTCTTCCCCTCAAGGTTTTTAAAACGCGTCTTCCCCTCAAGGTTTTTAAAACGCGTCTTCCCCTCAAGGTTTTTAAAACGCGTCTGTTAGGGAGAGGTTTCCACACCCTTATAAAGAATGCTTCATTCTCCTCTCCAACCAATGTAAGATCTCACCCTACAAATCTTCGAACTAAACCCATTCCTAAACTTTTGGGGAACTTGAAATCATTAAAGCTCATGATCTTCTCCCAACTAGACTCAATTATTCGCTTAGAAATCTCGAACAGAGGTCGAACAAAAGCTGATTGGTAAAATGTTTGATTGATGATTCAGGAATTGCTGCTTAGGAAGAAGATGATACAAGCAACAGATGTCAAAAAGTAATAGTAGGTGAAGCGTATTCGGTAAAAAAGCAGGCAGCAGGTTGTACTGCGATTTTCGTATAATTTTCGTATCGTCATTGTGATACACTCCTCCCATTCGATACTGTCAGAGCTAATTTGTTTTGTGTTTTGACAAACTGTCCCATAAGAGAAGCAGGCAGGCAGGTTCCACAGGCTTTTCTCTTCCTCAGGATTGAGCTTCAAAATATAGGTCTTTTCTTCTTCTTCTTTCTTCTCTTCTTTCTTGCTTGTAATTTGATTGATATGTATAATTGGATTGTGGGTAAGCTTATATATGCTCAACTGTTGCATATTACGCCTACTCCGACAAACGATGTCACACGAACGAATCAACGTCCTTCTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCGGGTTCTTCGTTTTTCTGGGAAAGTTGCTATACTACTACTCATCAGGCAGCCTTTCTTGTTGTTTCATCTTTTATTGTTATTACTAGTCATTCTCATCTGATTGTATGAAAACCGAGGTTGATTTAGTGGTGTGATATTATCCAGATTCCACATTCTTCTTTGTTCTTGTAAATTTACCTCCTTTTTTCCTCTC

mRNA sequence

TTGTTATTGATGCTGTCTGTTTGATTTAGCTTGCATTGTGATGATGTTTCTGAAATGAATACTTCCTGTTTCATCGAATCCATGTTTTCTGTAGCTTTTTTAGGATTGATCGGTTTTGTGCTTGTTCTTCTGAAGGCGAAGGGAGTGGGCATGGATCCTGGCAAGCTTTTCATTGGTGGGATTTCGTGGGACACGGATGAAGATCGTCTTCGAGAGTATTTTCAGAGCTTTGGGGAAGTGGTGGAGGTGATGATCATGAGGGATCGGACCACTGGCCGTGCTCGTGGCTTTGGTTTCGTCGTCTTTGCTGACCCTGTTGTTGCAGCAAGAGTTGTATTGGAAAAGCATGTGATTGATGGAAGAACTGTTGAAGCAAAGAAGGCTGTTCCTCGAGACGATCAAAACGTTTTGAGCAGGAACAATACCGGTATCCTTGGGTCACCAGGTCCTACTCGCACGAAAAAGATATTCGTAGGAGGTTTGGCATCAACTGTTACGGAGAGTGACTTCAAAACATATTTTGATCAGTTTGGAACAATCACAGACGTCGTGGTGATGTACGATCATAATACTCAGAGACCGAGAGGTTTCGGATTTATCACTTACGAGTCCGAGGAATCGGTGGAGAAAGTTTTATACAAAACTTTTCATGAACTCAATGGTAAAATGGTTGAGGTTAAGAGGGCTGTTCCAAAGGAATCATCACCAGTGCCAAACCGAAGTCAATTAGGTGCATACCCTTATGGTTTTGGTAGAGTTGGTAGCTATTTAAATGGCTATAATCAAGGATATAACCCGACCTCGGTTGGGGCATATGGATTGAGATCTGATGATAGGTTTAGTCCTGTTACAGTTGGTCGGGGTGGACTTTCTCCGATCAGTCCTGGTTATGGAATCGGGCTAAATCTCGAAACAGGGTTGAACCCAAACTATGGGACAGGTCTCAATGTTGGCTCTAACCTTAGCTATGGACGAGTAATGAGCCCCTCGTATGGTGGAAATTTGAATAGGTATGGTAGCCCGAACCCCATGGTGTATGGTGGTGGCAATGGAGGTAATGGTTCGATTTTAAGCTCGTCGGTTCAGAATCTGTGGGGAAACGTCGGGAACTCTGTTGGTACAAACTCGTCACACTTGAGGACTTTTCCTGGCTCTGGTGGTGTGCATACAGGAACTAATTCGTTGAACGGTATCGGAGGGCTTTGGGGTGCGTCTGCAAGTCTAGTTCATGGGGAACATTCTGGTTCTCCATTCAATGCTGTTAATCTCGACTTTGCGAGCGGTGATGGCAGCTTAACGTCGGGAACGACTGTAGGTTATGCTAGAAGCGTTGGAACTAATGTTTCCTCAGCATCTTTGTACTCTGCACCAAATATATATGATGAGGTTCATGGGAACAATGATGAAGGAAACTCATTTTATGGGCATTCCAGTTGGCAGTTGTTACCGACCGAGCTCGAGGATTCTTCGTCGGTTGGTTTCGGGCTTGGGAATGCTGCTTCGGATGTTATTAGTAGAAACAATGGTGGTTATACTGTCGGATACGGTGTTTCTAATAGACAATCTAATAGAGGAATTGCTGCTTAGGAAGAAGATGATACAAGCAACAGATGTCAAAAAGTAATAGTAGGTGAAGCGTATTCGGTAAAAAAGCAGGCAGCAGGTTGTACTGCGATTTTCGTATAATTTTCGTATCGTCATTGTGATACACTCCTCCCATTCGATACTGTCAGAGCTAATTTGTTTTGTGTTTTGACAAACTGTCCCATAAGAGAAGCAGGCAGGCAGGTTCCACAGGCTTTTCTCTTCCTCAGGATTGAGCTTCAAAATATAGGTCTTTTCTTCTTCTTCTTTCTTCTCTTCTTTCTTGCTTGTAATTTGATTGATATGTATAATTGGATTGTGGGTAAGCTTATATATGCTCAACTGTTGCATATTACGCCTACTCCGACAAACGATGTCACACGAACGAATCAACGTCCTTCTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCGGGTTCTTCGTTTTTCTGGGAAAGTTGCTATACTACTACTCATCAGGCAGCCTTTCTTGTTGTTTCATCTTTTATTGTTATTACTAGTCATTCTCATCTGATTGTATGAAAACCGAGGTTGATTTAGTGGTGTGATATTATCCAGATTCCACATTCTTCTTTGTTCTTGTAAATTTACCTCCTTTTTTCCTCTC

Coding sequence (CDS)

ATGAATACTTCCTGTTTCATCGAATCCATGTTTTCTGTAGCTTTTTTAGGATTGATCGGTTTTGTGCTTGTTCTTCTGAAGGCGAAGGGAGTGGGCATGGATCCTGGCAAGCTTTTCATTGGTGGGATTTCGTGGGACACGGATGAAGATCGTCTTCGAGAGTATTTTCAGAGCTTTGGGGAAGTGGTGGAGGTGATGATCATGAGGGATCGGACCACTGGCCGTGCTCGTGGCTTTGGTTTCGTCGTCTTTGCTGACCCTGTTGTTGCAGCAAGAGTTGTATTGGAAAAGCATGTGATTGATGGAAGAACTGTTGAAGCAAAGAAGGCTGTTCCTCGAGACGATCAAAACGTTTTGAGCAGGAACAATACCGGTATCCTTGGGTCACCAGGTCCTACTCGCACGAAAAAGATATTCGTAGGAGGTTTGGCATCAACTGTTACGGAGAGTGACTTCAAAACATATTTTGATCAGTTTGGAACAATCACAGACGTCGTGGTGATGTACGATCATAATACTCAGAGACCGAGAGGTTTCGGATTTATCACTTACGAGTCCGAGGAATCGGTGGAGAAAGTTTTATACAAAACTTTTCATGAACTCAATGGTAAAATGGTTGAGGTTAAGAGGGCTGTTCCAAAGGAATCATCACCAGTGCCAAACCGAAGTCAATTAGGTGCATACCCTTATGGTTTTGGTAGAGTTGGTAGCTATTTAAATGGCTATAATCAAGGATATAACCCGACCTCGGTTGGGGCATATGGATTGAGATCTGATGATAGGTTTAGTCCTGTTACAGTTGGTCGGGGTGGACTTTCTCCGATCAGTCCTGGTTATGGAATCGGGCTAAATCTCGAAACAGGGTTGAACCCAAACTATGGGACAGGTCTCAATGTTGGCTCTAACCTTAGCTATGGACGAGTAATGAGCCCCTCGTATGGTGGAAATTTGAATAGGTATGGTAGCCCGAACCCCATGGTGTATGGTGGTGGCAATGGAGGTAATGGTTCGATTTTAAGCTCGTCGGTTCAGAATCTGTGGGGAAACGTCGGGAACTCTGTTGGTACAAACTCGTCACACTTGAGGACTTTTCCTGGCTCTGGTGGTGTGCATACAGGAACTAATTCGTTGAACGGTATCGGAGGGCTTTGGGGTGCGTCTGCAAGTCTAGTTCATGGGGAACATTCTGGTTCTCCATTCAATGCTGTTAATCTCGACTTTGCGAGCGGTGATGGCAGCTTAACGTCGGGAACGACTGTAGGTTATGCTAGAAGCGTTGGAACTAATGTTTCCTCAGCATCTTTGTACTCTGCACCAAATATATATGATGAGGTTCATGGGAACAATGATGAAGGAAACTCATTTTATGGGCATTCCAGTTGGCAGTTGTTACCGACCGAGCTCGAGGATTCTTCGTCGGTTGGTTTCGGGCTTGGGAATGCTGCTTCGGATGTTATTAGTAGAAACAATGGTGGTTATACTGTCGGATACGGTGTTTCTAATAGACAATCTAATAGAGGAATTGCTGCTTAG

Protein sequence

MNTSCFIESMFSVAFLGLIGFVLVLLKAKGVGMDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARVVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDFKTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAVPKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGLSPISPGYGIGLNLETGLNPNYGTGLNVGSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGNGGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVHGEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEGNSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA

Homology

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BLAST of Cp4.1LG20g06600 vs. ExPASy Swiss-Prot
Match: Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.3e-61
Identity = 167/425 (39.29%), Postives = 226/425 (53.18%), Query Frame = 0


Query: 34  DPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARV 93
           D GKLF+GGISW+TDED+LRE+F ++GEV + ++MRD+ TGR RGFGFV+F+DP V  RV
Sbjct: 4   DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63

Query: 94  VLEKHVIDGRTVEAKKAVPRDDQNVLSR----NNTGILGSPGPTRTKKIFVGGLASTVTE 153
           + EKH ID R V+ K+A+ R++Q V  R    N +   G     +TKKIFVGGL  T+T+
Sbjct: 64  LQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTD 123

Query: 154 SDFKTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 213
            +F+ YF+ +G +TDV +MYD  T RPRGFGF++++SE++V+ VL+KTFH+L+GK VEVK
Sbjct: 124 EEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVK 183

Query: 214 RAVPKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRF-SPVTVG 273
           RA+PK+++P       G    G G  G Y     QGY        G    +RF    +VG
Sbjct: 184 RALPKDANPGG-----GGRSMGGGGSGGY-----QGYGGNESSYDGRMDSNRFLQHQSVG 243

Query: 274 RGGLSPISPGYGIGLNLETGLNPNYGTGLNVGSNLSYGRVMSPSYGGNLNRYGSPNPMVY 333
            G  S  S GYG G          YG G N     +YG      Y G+   YG+     Y
Sbjct: 244 NGLPSYGSSGYGAG----------YGNGSNGAGYGAYG-----GYTGSAGGYGAGATAGY 303

Query: 334 GGGN---GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTG------------ 393
           G  N    G GS    + +N W    +S   N  +     GSG  H+G            
Sbjct: 304 GATNIPGAGYGSSTGVAPRNSWDTPASSGYGNPGY-----GSGAAHSGYGVPGAAPPTQS 363

Query: 394 ----TNSLNGIGGLWG--------ASASLVHGEHSG----SPFNAVNLDFASGDGSLTSG 423
               +N   G GG  G        A+  +V G  SG    +P +   +    GDGS  S 
Sbjct: 364 PSGYSNQGYGYGGYSGSDSGYGNQAAYGVVGGRPSGGGSNNPGSGGYMGGGYGDGSWRSD 398

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BLAST of Cp4.1LG20g06600 vs. ExPASy Swiss-Prot
Match: Q96DH6 (RNA-binding protein Musashi homolog 2 OS=Homo sapiens OX=9606 GN=MSI2 PE=1 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.6e-46
Identity = 128/325 (39.38%), Postives = 174/325 (53.54%), Query Frame = 0


Query: 34  DPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARV 93
           DPGK+FIGG+SW T  D LR+YF  FGE+ E M+MRD TT R+RGFGFV FADP    +V
Sbjct: 19  DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78

Query: 94  VLE-KHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 153
           + +  H +D +T++ K A PR  Q  +             TRTKKIFVGGL++     D 
Sbjct: 79  LGQPHHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSANTVVEDV 138

Query: 154 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 213
           K YF+QFG + D ++M+D  T R RGFGF+T+E+E+ VEKV    FHE+N KMVE K+A 
Sbjct: 139 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 198

Query: 214 PKE-SSPVPNRSQLGAYPY-------GFGRVG--SYLNGYNQGYNPTSVGAYGLRSDDRF 273
           PKE   P   R +    PY       G G +G  +++  Y +GY P    +YG +    F
Sbjct: 199 PKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGY-PGFAPSYGYQFPG-F 258

Query: 274 SPVTVGRGGLSPISPGYGIGLNLETGLNPNYGTGLNVGSNLS--YGRVMSPSYGGNLNRY 333
                G    + ++   G G N      P    G N    ++  YG     S  GN    
Sbjct: 259 PAAAYGPVAAAAVAAARGSGSN---PARPGGFPGANSPGPVADLYGPASQDSGVGNYISA 318

Query: 334 GSPNPMVYGGGNGGNGSILSSSVQN 346
            SP P   G G+G  G +++++  N
Sbjct: 319 ASPQP-GSGFGHGIAGPLIATAFTN 325

[Close]

BLAST of Cp4.1LG20g06600 vs. ExPASy Swiss-Prot
Match: Q96EP5 (DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 7.9e-46
Identity = 104/254 (40.94%), Postives = 147/254 (57.87%), Query Frame = 0


Query: 36  GKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARVVL 95
           GKLF+GG+ W T ++ LR YF  +GEVV+ +IM+D+TT ++RGFGFV F DP     V+ 
Sbjct: 10  GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69

Query: 96  EK-HVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTK--KIFVGGLASTVTESDF 155
            + H +DGR ++ K   PR  Q   +R   G    P    +K  KIFVGG+     E++ 
Sbjct: 70  SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 129

Query: 156 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 215
           + YF +FG +T+VV++YD   QRPRGFGFIT+E E+SV++ +   FH++ GK VEVKRA 
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 189

Query: 216 PKES-SPVPNRSQLGAYPYGFGRVGSYLNG--------YNQGYNPTSVGAYGLRSDDRFS 275
           P++S S  P   Q GA  +G   V +  NG        + QGY P  +     ++   + 
Sbjct: 190 PRDSKSQAP--GQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYG 249

Query: 276 PVTVGRGGLSPISP 278
           P   GRG   P  P
Sbjct: 250 PPPAGRGAPPPPPP 261

[Close]

BLAST of Cp4.1LG20g06600 vs. ExPASy Swiss-Prot
Match: Q920Q6 (RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.0e-45
Identity = 135/352 (38.35%), Postives = 181/352 (51.42%), Query Frame = 0


Query: 34  DPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARV 93
           DPGK+FIGG+SW T  D LR+YF  FGE+ E M+MRD TT R+RGFGFV FADP    +V
Sbjct: 19  DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78

Query: 94  VLE-KHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 153
           + +  H +D +T++ K A PR  Q  +             TRTKKIFVGGL++     D 
Sbjct: 79  LGQPHHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSANTVVEDV 138

Query: 154 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 213
           K YF+QFG + D ++M+D  T R RGFGF+T+E+E+ VEKV    FHE+N KMVE K+A 
Sbjct: 139 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 198

Query: 214 PKE-SSPVPNRSQLGAYPY-------GFGRVG--SYLNGYNQGYNPTSVGAYGLRSDDRF 273
           PKE   P   R +    PY       G G +G  +++  Y +GY P    +YG +    F
Sbjct: 199 PKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGY-PGFAPSYGYQFPG-F 258

Query: 274 SPVTVGRGGLSPISPGYGIGLNLETGLNPNYGTGLN-VGSNLSYGRVMSPSYGGNLNRYG 333
                G    + ++   G  LN      PN+G   +  GSN        P+  G      
Sbjct: 259 PAAAYGPVAAAAVAAARGSVLN-SYSAQPNFGAPASPAGSN--------PARPGGFPGAN 318

Query: 334 SPNPM--VYGGGNGGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVH 372
           SP P+  +YG  +  +G             VGN +   S      PGSG  H
Sbjct: 319 SPGPVADLYGPASQDSG-------------VGNYISAASPQ----PGSGFGH 330

[Close]

BLAST of Cp4.1LG20g06600 vs. ExPASy Swiss-Prot
Match: Q9JII5 (DAZ-associated protein 1 OS=Mus musculus OX=10090 GN=Dazap1 PE=1 SV=2)

HSP 1 Score: 184.9 bits (468), Expect = 2.3e-45
Identity = 102/254 (40.16%), Postives = 147/254 (57.87%), Query Frame = 0


Query: 36  GKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARVVL 95
           GKLF+GG+ W T ++ LR YF  +GEVV+ +IM+D+TT ++RGFGFV F DP     V+ 
Sbjct: 10  GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69

Query: 96  EK-HVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSP--GPTRTKKIFVGGLASTVTESDF 155
            + H +DGR ++ K   PR  Q   +R   G    P    +++ KIFVGG+     E++ 
Sbjct: 70  SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETEL 129

Query: 156 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 215
           + YF +FG +T+VV++YD   QRPRGFGFIT+E E+SV++ +   FH++ GK VEVKRA 
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 189

Query: 216 PKES-SPVPNRSQLGAYPYGFGRVGSYLNG--------YNQGYNPTSVGAYGLRSDDRFS 275
           P++S +  P   Q GA  +G     S  NG        + QGY P  +     ++   + 
Sbjct: 190 PRDSKNQAP--GQPGASQWGSRVAPSAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYG 249

Query: 276 PVTVGRGGLSPISP 278
           P   GRG   P  P
Sbjct: 250 PPPAGRGAPPPPPP 261

[Close]

BLAST of Cp4.1LG20g06600 vs. NCBI nr
Match: XP_023520384.1 (heterogeneous nuclear ribonucleoprotein 1 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1004 bits (2595), Expect = 0.0
Identity = 510/510 (100.00%), Postives = 510/510 (100.00%), Query Frame = 0


Query: 1   MNTSCFIESMFSVAFLGLIGFVLVLLKAKGVGMDPGKLFIGGISWDTDEDRLREYFQSFG 60
           MNTSCFIESMFSVAFLGLIGFVLVLLKAKGVGMDPGKLFIGGISWDTDEDRLREYFQSFG
Sbjct: 1   MNTSCFIESMFSVAFLGLIGFVLVLLKAKGVGMDPGKLFIGGISWDTDEDRLREYFQSFG 60

Query: 61  EVVEVMIMRDRTTGRARGFGFVVFADPVVAARVVLEKHVIDGRTVEAKKAVPRDDQNVLS 120
           EVVEVMIMRDRTTGRARGFGFVVFADPVVAARVVLEKHVIDGRTVEAKKAVPRDDQNVLS
Sbjct: 61  EVVEVMIMRDRTTGRARGFGFVVFADPVVAARVVLEKHVIDGRTVEAKKAVPRDDQNVLS 120

Query: 121 RNNTGILGSPGPTRTKKIFVGGLASTVTESDFKTYFDQFGTITDVVVMYDHNTQRPRGFG 180
           RNNTGILGSPGPTRTKKIFVGGLASTVTESDFKTYFDQFGTITDVVVMYDHNTQRPRGFG
Sbjct: 121 RNNTGILGSPGPTRTKKIFVGGLASTVTESDFKTYFDQFGTITDVVVMYDHNTQRPRGFG 180

Query: 181 FITYESEESVEKVLYKTFHELNGKMVEVKRAVPKESSPVPNRSQLGAYPYGFGRVGSYLN 240
           FITYESEESVEKVLYKTFHELNGKMVEVKRAVPKESSPVPNRSQLGAYPYGFGRVGSYLN
Sbjct: 181 FITYESEESVEKVLYKTFHELNGKMVEVKRAVPKESSPVPNRSQLGAYPYGFGRVGSYLN 240

Query: 241 GYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGLSPISPGYGIGLNLETGLNPNYGTGLNVG 300
           GYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGLSPISPGYGIGLNLETGLNPNYGTGLNVG
Sbjct: 241 GYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGLSPISPGYGIGLNLETGLNPNYGTGLNVG 300

Query: 301 SNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGNGGNGSILSSSVQNLWGNVGNSVGTNSSH 360
           SNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGNGGNGSILSSSVQNLWGNVGNSVGTNSSH
Sbjct: 301 SNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGNGGNGSILSSSVQNLWGNVGNSVGTNSSH 360

Query: 361 LRTFPGSGGVHTGTNSLNGIGGLWGASASLVHGEHSGSPFNAVNLDFASGDGSLTSGTTV 420
           LRTFPGSGGVHTGTNSLNGIGGLWGASASLVHGEHSGSPFNAVNLDFASGDGSLTSGTTV
Sbjct: 361 LRTFPGSGGVHTGTNSLNGIGGLWGASASLVHGEHSGSPFNAVNLDFASGDGSLTSGTTV 420

Query: 421 GYARSVGTNVSSASLYSAPNIYDEVHGNNDEGNSFYGHSSWQLLPTELEDSSSVGFGLGN 480
           GYARSVGTNVSSASLYSAPNIYDEVHGNNDEGNSFYGHSSWQLLPTELEDSSSVGFGLGN
Sbjct: 421 GYARSVGTNVSSASLYSAPNIYDEVHGNNDEGNSFYGHSSWQLLPTELEDSSSVGFGLGN 480

Query: 481 AASDVISRNNGGYTVGYGVSNRQSNRGIAA 510
           AASDVISRNNGGYTVGYGVSNRQSNRGIAA
Sbjct: 481 AASDVISRNNGGYTVGYGVSNRQSNRGIAA 510

[Close]

BLAST of Cp4.1LG20g06600 vs. NCBI nr
Match: XP_022927353.1 (heterogeneous nuclear ribonucleoprotein 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 1001 bits (2587), Expect = 0.0
Identity = 508/510 (99.61%), Postives = 509/510 (99.80%), Query Frame = 0


Query: 1   MNTSCFIESMFSVAFLGLIGFVLVLLKAKGVGMDPGKLFIGGISWDTDEDRLREYFQSFG 60
           MN SCFIESMFSVAFLGLIGFVLVLLKAKGVGMDPGKLFIGGISWDTDEDRLREYFQSFG
Sbjct: 1   MNASCFIESMFSVAFLGLIGFVLVLLKAKGVGMDPGKLFIGGISWDTDEDRLREYFQSFG 60

Query: 61  EVVEVMIMRDRTTGRARGFGFVVFADPVVAARVVLEKHVIDGRTVEAKKAVPRDDQNVLS 120
           EVVEVMIMRDRTTGRARGFGFVVFADPVVAARVVLEKHVIDGRTVEAKKAVPRDDQNVLS
Sbjct: 61  EVVEVMIMRDRTTGRARGFGFVVFADPVVAARVVLEKHVIDGRTVEAKKAVPRDDQNVLS 120

Query: 121 RNNTGILGSPGPTRTKKIFVGGLASTVTESDFKTYFDQFGTITDVVVMYDHNTQRPRGFG 180
           RNNTGILGSPGPTRTKKIFVGGLASTVTESDFKTYFDQFGTITDVVVMYDHNTQRPRGFG
Sbjct: 121 RNNTGILGSPGPTRTKKIFVGGLASTVTESDFKTYFDQFGTITDVVVMYDHNTQRPRGFG 180

Query: 181 FITYESEESVEKVLYKTFHELNGKMVEVKRAVPKESSPVPNRSQLGAYPYGFGRVGSYLN 240
           FITYESEESVEKVLYKTFHELNGKMVEVKRAVPKESSPVPNRSQLGAYPYGFGRVGSYLN
Sbjct: 181 FITYESEESVEKVLYKTFHELNGKMVEVKRAVPKESSPVPNRSQLGAYPYGFGRVGSYLN 240

Query: 241 GYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGLSPISPGYGIGLNLETGLNPNYGTGLNVG 300
           GYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGLSPISPGYGIGLNL+TGLNPNYGTGLNVG
Sbjct: 241 GYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGLSPISPGYGIGLNLDTGLNPNYGTGLNVG 300

Query: 301 SNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGNGGNGSILSSSVQNLWGNVGNSVGTNSSH 360
           SNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGNGGNGSILSSSVQNLWGNVGNSVGTNSSH
Sbjct: 301 SNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGNGGNGSILSSSVQNLWGNVGNSVGTNSSH 360

Query: 361 LRTFPGSGGVHTGTNSLNGIGGLWGASASLVHGEHSGSPFNAVNLDFASGDGSLTSGTTV 420
           LRTFPGSGGVHTGTNSLNGIGGLWGASASLVHGEHSGSPFNAVNLDFASGDGSLTSGTTV
Sbjct: 361 LRTFPGSGGVHTGTNSLNGIGGLWGASASLVHGEHSGSPFNAVNLDFASGDGSLTSGTTV 420

Query: 421 GYARSVGTNVSSASLYSAPNIYDEVHGNNDEGNSFYGHSSWQLLPTELEDSSSVGFGLGN 480
           GYARSVGTNVSSASLYSAPNIYDEVHGNNDEGNSFYGHSSWQLLPTELEDSSSVGFGLGN
Sbjct: 421 GYARSVGTNVSSASLYSAPNIYDEVHGNNDEGNSFYGHSSWQLLPTELEDSSSVGFGLGN 480

Query: 481 AASDVISRNNGGYTVGYGVSNRQSNRGIAA 510
           AASDVISRNNGGYTVGYGVSNRQSNRGIAA
Sbjct: 481 AASDVISRNNGGYTVGYGVSNRQSNRGIAA 510

[Close]

BLAST of Cp4.1LG20g06600 vs. NCBI nr
Match: XP_023001331.1 (heterogeneous nuclear ribonucleoprotein 1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 999 bits (2583), Expect = 0.0
Identity = 507/510 (99.41%), Postives = 508/510 (99.61%), Query Frame = 0


Query: 1   MNTSCFIESMFSVAFLGLIGFVLVLLKAKGVGMDPGKLFIGGISWDTDEDRLREYFQSFG 60
           MN SCFIESMFSVAFLGLIGFVLVLLKAKGVGMDPGKLFIGGISWDTDEDRLREYFQSFG
Sbjct: 1   MNASCFIESMFSVAFLGLIGFVLVLLKAKGVGMDPGKLFIGGISWDTDEDRLREYFQSFG 60

Query: 61  EVVEVMIMRDRTTGRARGFGFVVFADPVVAARVVLEKHVIDGRTVEAKKAVPRDDQNVLS 120
           EVVEVMIMRDRTTGRARGFGFVVFADPVVAARVVLEKHVIDGRTVEAKKAVPRDDQN+LS
Sbjct: 61  EVVEVMIMRDRTTGRARGFGFVVFADPVVAARVVLEKHVIDGRTVEAKKAVPRDDQNILS 120

Query: 121 RNNTGILGSPGPTRTKKIFVGGLASTVTESDFKTYFDQFGTITDVVVMYDHNTQRPRGFG 180
           RNNTGILGSPGPTRTKKIFVGGLASTVTESDFKTYFDQFGTITDVVVMYDHNTQRPRGFG
Sbjct: 121 RNNTGILGSPGPTRTKKIFVGGLASTVTESDFKTYFDQFGTITDVVVMYDHNTQRPRGFG 180

Query: 181 FITYESEESVEKVLYKTFHELNGKMVEVKRAVPKESSPVPNRSQLGAYPYGFGRVGSYLN 240
           FITYESEESVEKVLYKTFHELNGKMVEVKRAVPKESSPVPNRSQLGAYPYGFGRVGSYLN
Sbjct: 181 FITYESEESVEKVLYKTFHELNGKMVEVKRAVPKESSPVPNRSQLGAYPYGFGRVGSYLN 240

Query: 241 GYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGLSPISPGYGIGLNLETGLNPNYGTGLNVG 300
           GYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGLSPISPGYGIGLNLETGLNPNYGTGLNVG
Sbjct: 241 GYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGLSPISPGYGIGLNLETGLNPNYGTGLNVG 300

Query: 301 SNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGNGGNGSILSSSVQNLWGNVGNSVGTNSSH 360
           SNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGNGGN SILSSSVQNLWGNVGNSVGTNSSH
Sbjct: 301 SNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGNGGNSSILSSSVQNLWGNVGNSVGTNSSH 360

Query: 361 LRTFPGSGGVHTGTNSLNGIGGLWGASASLVHGEHSGSPFNAVNLDFASGDGSLTSGTTV 420
           LRTFPGSGGVHTGTNSLNGIGGLWGASASLVHGEHSGSPFNAVNLDFASGDGSLTSGTTV
Sbjct: 361 LRTFPGSGGVHTGTNSLNGIGGLWGASASLVHGEHSGSPFNAVNLDFASGDGSLTSGTTV 420

Query: 421 GYARSVGTNVSSASLYSAPNIYDEVHGNNDEGNSFYGHSSWQLLPTELEDSSSVGFGLGN 480
           GYARSVGTNVSSASLYSAPNIYDEVHGNNDEGNSFYGHSSWQLLPTELEDSSSVGFGLGN
Sbjct: 421 GYARSVGTNVSSASLYSAPNIYDEVHGNNDEGNSFYGHSSWQLLPTELEDSSSVGFGLGN 480

Query: 481 AASDVISRNNGGYTVGYGVSNRQSNRGIAA 510
           AASDVISRNNGGYTVGYGVSNRQSNRGIAA
Sbjct: 481 AASDVISRNNGGYTVGYGVSNRQSNRGIAA 510

[Close]

BLAST of Cp4.1LG20g06600 vs. NCBI nr
Match: XP_023520385.1 (heterogeneous nuclear ribonucleoprotein 1 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 947 bits (2447), Expect = 0.0
Identity = 478/478 (100.00%), Postives = 478/478 (100.00%), Query Frame = 0


Query: 33  MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 92
           MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60

Query: 93  VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 152
           VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 153 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 212
           KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 213 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL 272
           PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL
Sbjct: 181 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL 240

Query: 273 SPISPGYGIGLNLETGLNPNYGTGLNVGSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGN 332
           SPISPGYGIGLNLETGLNPNYGTGLNVGSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGN
Sbjct: 241 SPISPGYGIGLNLETGLNPNYGTGLNVGSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGN 300

Query: 333 GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH 392
           GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH
Sbjct: 301 GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH 360

Query: 393 GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG 452
           GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG
Sbjct: 361 GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG 420

Query: 453 NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA 510
           NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA
Sbjct: 421 NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA 478

[Close]

BLAST of Cp4.1LG20g06600 vs. NCBI nr
Match: XP_022927354.1 (heterogeneous nuclear ribonucleoprotein 1-like isoform X2 [Cucurbita moschata] >KAG7019379.1 Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 946 bits (2444), Expect = 0.0
Identity = 477/478 (99.79%), Postives = 478/478 (100.00%), Query Frame = 0


Query: 33  MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 92
           MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60

Query: 93  VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 152
           VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 153 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 212
           KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 213 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL 272
           PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL
Sbjct: 181 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL 240

Query: 273 SPISPGYGIGLNLETGLNPNYGTGLNVGSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGN 332
           SPISPGYGIGLNL+TGLNPNYGTGLNVGSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGN
Sbjct: 241 SPISPGYGIGLNLDTGLNPNYGTGLNVGSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGN 300

Query: 333 GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH 392
           GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH
Sbjct: 301 GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH 360

Query: 393 GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG 452
           GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG
Sbjct: 361 GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG 420

Query: 453 NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA 510
           NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA
Sbjct: 421 NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA 478

[Close]

BLAST of Cp4.1LG20g06600 vs. ExPASy TrEMBL
Match: A0A6J1EKS0 (heterogeneous nuclear ribonucleoprotein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111434205 PE=4 SV=1)

HSP 1 Score: 1001 bits (2587), Expect = 0.0
Identity = 508/510 (99.61%), Postives = 509/510 (99.80%), Query Frame = 0


Query: 1   MNTSCFIESMFSVAFLGLIGFVLVLLKAKGVGMDPGKLFIGGISWDTDEDRLREYFQSFG 60
           MN SCFIESMFSVAFLGLIGFVLVLLKAKGVGMDPGKLFIGGISWDTDEDRLREYFQSFG
Sbjct: 1   MNASCFIESMFSVAFLGLIGFVLVLLKAKGVGMDPGKLFIGGISWDTDEDRLREYFQSFG 60

Query: 61  EVVEVMIMRDRTTGRARGFGFVVFADPVVAARVVLEKHVIDGRTVEAKKAVPRDDQNVLS 120
           EVVEVMIMRDRTTGRARGFGFVVFADPVVAARVVLEKHVIDGRTVEAKKAVPRDDQNVLS
Sbjct: 61  EVVEVMIMRDRTTGRARGFGFVVFADPVVAARVVLEKHVIDGRTVEAKKAVPRDDQNVLS 120

Query: 121 RNNTGILGSPGPTRTKKIFVGGLASTVTESDFKTYFDQFGTITDVVVMYDHNTQRPRGFG 180
           RNNTGILGSPGPTRTKKIFVGGLASTVTESDFKTYFDQFGTITDVVVMYDHNTQRPRGFG
Sbjct: 121 RNNTGILGSPGPTRTKKIFVGGLASTVTESDFKTYFDQFGTITDVVVMYDHNTQRPRGFG 180

Query: 181 FITYESEESVEKVLYKTFHELNGKMVEVKRAVPKESSPVPNRSQLGAYPYGFGRVGSYLN 240
           FITYESEESVEKVLYKTFHELNGKMVEVKRAVPKESSPVPNRSQLGAYPYGFGRVGSYLN
Sbjct: 181 FITYESEESVEKVLYKTFHELNGKMVEVKRAVPKESSPVPNRSQLGAYPYGFGRVGSYLN 240

Query: 241 GYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGLSPISPGYGIGLNLETGLNPNYGTGLNVG 300
           GYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGLSPISPGYGIGLNL+TGLNPNYGTGLNVG
Sbjct: 241 GYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGLSPISPGYGIGLNLDTGLNPNYGTGLNVG 300

Query: 301 SNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGNGGNGSILSSSVQNLWGNVGNSVGTNSSH 360
           SNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGNGGNGSILSSSVQNLWGNVGNSVGTNSSH
Sbjct: 301 SNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGNGGNGSILSSSVQNLWGNVGNSVGTNSSH 360

Query: 361 LRTFPGSGGVHTGTNSLNGIGGLWGASASLVHGEHSGSPFNAVNLDFASGDGSLTSGTTV 420
           LRTFPGSGGVHTGTNSLNGIGGLWGASASLVHGEHSGSPFNAVNLDFASGDGSLTSGTTV
Sbjct: 361 LRTFPGSGGVHTGTNSLNGIGGLWGASASLVHGEHSGSPFNAVNLDFASGDGSLTSGTTV 420

Query: 421 GYARSVGTNVSSASLYSAPNIYDEVHGNNDEGNSFYGHSSWQLLPTELEDSSSVGFGLGN 480
           GYARSVGTNVSSASLYSAPNIYDEVHGNNDEGNSFYGHSSWQLLPTELEDSSSVGFGLGN
Sbjct: 421 GYARSVGTNVSSASLYSAPNIYDEVHGNNDEGNSFYGHSSWQLLPTELEDSSSVGFGLGN 480

Query: 481 AASDVISRNNGGYTVGYGVSNRQSNRGIAA 510
           AASDVISRNNGGYTVGYGVSNRQSNRGIAA
Sbjct: 481 AASDVISRNNGGYTVGYGVSNRQSNRGIAA 510

[Close]

BLAST of Cp4.1LG20g06600 vs. ExPASy TrEMBL
Match: A0A6J1KIB5 (heterogeneous nuclear ribonucleoprotein 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111495494 PE=4 SV=1)

HSP 1 Score: 999 bits (2583), Expect = 0.0
Identity = 507/510 (99.41%), Postives = 508/510 (99.61%), Query Frame = 0


Query: 1   MNTSCFIESMFSVAFLGLIGFVLVLLKAKGVGMDPGKLFIGGISWDTDEDRLREYFQSFG 60
           MN SCFIESMFSVAFLGLIGFVLVLLKAKGVGMDPGKLFIGGISWDTDEDRLREYFQSFG
Sbjct: 1   MNASCFIESMFSVAFLGLIGFVLVLLKAKGVGMDPGKLFIGGISWDTDEDRLREYFQSFG 60

Query: 61  EVVEVMIMRDRTTGRARGFGFVVFADPVVAARVVLEKHVIDGRTVEAKKAVPRDDQNVLS 120
           EVVEVMIMRDRTTGRARGFGFVVFADPVVAARVVLEKHVIDGRTVEAKKAVPRDDQN+LS
Sbjct: 61  EVVEVMIMRDRTTGRARGFGFVVFADPVVAARVVLEKHVIDGRTVEAKKAVPRDDQNILS 120

Query: 121 RNNTGILGSPGPTRTKKIFVGGLASTVTESDFKTYFDQFGTITDVVVMYDHNTQRPRGFG 180
           RNNTGILGSPGPTRTKKIFVGGLASTVTESDFKTYFDQFGTITDVVVMYDHNTQRPRGFG
Sbjct: 121 RNNTGILGSPGPTRTKKIFVGGLASTVTESDFKTYFDQFGTITDVVVMYDHNTQRPRGFG 180

Query: 181 FITYESEESVEKVLYKTFHELNGKMVEVKRAVPKESSPVPNRSQLGAYPYGFGRVGSYLN 240
           FITYESEESVEKVLYKTFHELNGKMVEVKRAVPKESSPVPNRSQLGAYPYGFGRVGSYLN
Sbjct: 181 FITYESEESVEKVLYKTFHELNGKMVEVKRAVPKESSPVPNRSQLGAYPYGFGRVGSYLN 240

Query: 241 GYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGLSPISPGYGIGLNLETGLNPNYGTGLNVG 300
           GYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGLSPISPGYGIGLNLETGLNPNYGTGLNVG
Sbjct: 241 GYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGLSPISPGYGIGLNLETGLNPNYGTGLNVG 300

Query: 301 SNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGNGGNGSILSSSVQNLWGNVGNSVGTNSSH 360
           SNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGNGGN SILSSSVQNLWGNVGNSVGTNSSH
Sbjct: 301 SNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGNGGNSSILSSSVQNLWGNVGNSVGTNSSH 360

Query: 361 LRTFPGSGGVHTGTNSLNGIGGLWGASASLVHGEHSGSPFNAVNLDFASGDGSLTSGTTV 420
           LRTFPGSGGVHTGTNSLNGIGGLWGASASLVHGEHSGSPFNAVNLDFASGDGSLTSGTTV
Sbjct: 361 LRTFPGSGGVHTGTNSLNGIGGLWGASASLVHGEHSGSPFNAVNLDFASGDGSLTSGTTV 420

Query: 421 GYARSVGTNVSSASLYSAPNIYDEVHGNNDEGNSFYGHSSWQLLPTELEDSSSVGFGLGN 480
           GYARSVGTNVSSASLYSAPNIYDEVHGNNDEGNSFYGHSSWQLLPTELEDSSSVGFGLGN
Sbjct: 421 GYARSVGTNVSSASLYSAPNIYDEVHGNNDEGNSFYGHSSWQLLPTELEDSSSVGFGLGN 480

Query: 481 AASDVISRNNGGYTVGYGVSNRQSNRGIAA 510
           AASDVISRNNGGYTVGYGVSNRQSNRGIAA
Sbjct: 481 AASDVISRNNGGYTVGYGVSNRQSNRGIAA 510

[Close]

BLAST of Cp4.1LG20g06600 vs. ExPASy TrEMBL
Match: A0A6J1EHS3 (heterogeneous nuclear ribonucleoprotein 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111434205 PE=4 SV=1)

HSP 1 Score: 946 bits (2444), Expect = 0.0
Identity = 477/478 (99.79%), Postives = 478/478 (100.00%), Query Frame = 0


Query: 33  MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 92
           MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60

Query: 93  VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 152
           VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 153 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 212
           KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 213 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL 272
           PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL
Sbjct: 181 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL 240

Query: 273 SPISPGYGIGLNLETGLNPNYGTGLNVGSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGN 332
           SPISPGYGIGLNL+TGLNPNYGTGLNVGSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGN
Sbjct: 241 SPISPGYGIGLNLDTGLNPNYGTGLNVGSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGN 300

Query: 333 GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH 392
           GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH
Sbjct: 301 GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH 360

Query: 393 GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG 452
           GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG
Sbjct: 361 GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG 420

Query: 453 NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA 510
           NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA
Sbjct: 421 NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA 478

[Close]

BLAST of Cp4.1LG20g06600 vs. ExPASy TrEMBL
Match: A0A6J1KG87 (heterogeneous nuclear ribonucleoprotein 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111495494 PE=4 SV=1)

HSP 1 Score: 944 bits (2440), Expect = 0.0
Identity = 476/478 (99.58%), Postives = 477/478 (99.79%), Query Frame = 0


Query: 33  MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 92
           MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 60

Query: 93  VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 152
           VVLEKHVIDGRTVEAKKAVPRDDQN+LSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 153 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 212
           KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 213 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL 272
           PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL
Sbjct: 181 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL 240

Query: 273 SPISPGYGIGLNLETGLNPNYGTGLNVGSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGN 332
           SPISPGYGIGLNLETGLNPNYGTGLNVGSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGN
Sbjct: 241 SPISPGYGIGLNLETGLNPNYGTGLNVGSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGN 300

Query: 333 GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH 392
           GGN SILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH
Sbjct: 301 GGNSSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH 360

Query: 393 GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG 452
           GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG
Sbjct: 361 GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG 420

Query: 453 NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA 510
           NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA
Sbjct: 421 NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA 478

[Close]

BLAST of Cp4.1LG20g06600 vs. ExPASy TrEMBL
Match: A0A6J1CL94 (heterogeneous nuclear ribonucleoprotein 1 OS=Momordica charantia OX=3673 GN=LOC111012638 PE=4 SV=1)

HSP 1 Score: 884 bits (2285), Expect = 0.0
Identity = 442/478 (92.47%), Postives = 457/478 (95.61%), Query Frame = 0


Query: 33  MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 92
           MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPV+AAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVIAAR 60

Query: 93  VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 152
           VVLEKHVIDGRTVEAKKAVPRDDQN+LSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 153 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 212
           K YFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 213 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL 272
           PKESSPVPNR+QLG YPYGFGRVGSYLNGYNQGYNP SVG YGLRSD RFSP++VGRGGL
Sbjct: 181 PKESSPVPNRNQLGGYPYGFGRVGSYLNGYNQGYNPASVGGYGLRSDGRFSPISVGRGGL 240

Query: 273 SPISPGYGIGLNLETGLNPNYGTGLNVGSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGN 332
           SPISPGYGIGLNL+TGL+PNYG G N  SNLSYGRVMSPSYG NLNRYGSPNPM+YGGG+
Sbjct: 241 SPISPGYGIGLNLDTGLSPNYGAGPNGNSNLSYGRVMSPSYGVNLNRYGSPNPMLYGGGS 300

Query: 333 GGNGSILSSSVQNLWGNVGNSVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASASLVH 392
           GGNGSILSSSVQNLWGNVGNS G NSSHLRTFPGSGGVHTGTNSLN IGGLWGASASL H
Sbjct: 301 GGNGSILSSSVQNLWGNVGNSAGANSSHLRTFPGSGGVHTGTNSLNSIGGLWGASASLGH 360

Query: 393 GEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHGNNDEG 452
           GE++GSPFN  NLDF +GD S TSGTTVGYARS+GTNVSSASLYSAPNIYDEVHGNNDEG
Sbjct: 361 GENAGSPFNTANLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNNDEG 420

Query: 453 NSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRGIAA 510
           NSFYGHSSWQ LPTELEDSSS+GFGLGNAASDVISRN+ GYTVGYGVSNRQSNRGIAA
Sbjct: 421 NSFYGHSSWQSLPTELEDSSSIGFGLGNAASDVISRNSAGYTVGYGVSNRQSNRGIAA 478

[Close]

BLAST of Cp4.1LG20g06600 vs. TAIR 10
Match: AT3G07810.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 451.8 bits (1161), Expect = 7.2e-127
Identity = 272/495 (54.95%), Postives = 329/495 (66.46%), Query Frame = 0


Query: 34  DPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARV 93
           D GKLFIGGISWDT+E+RL+EYF SFGEV+E +I++DRTTGRARGFGFVVFADP VA  V
Sbjct: 4   DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63

Query: 94  VLEKHVIDGRTVEAKKAVPRDDQNVLSR-NNTGILGSP-GPTRTKKIFVGGLASTVTESD 153
           + EKH IDGR VEAKKAVPRDDQN+++R N++ I GSP GP RT+KIFVGGL S+VTESD
Sbjct: 64  ITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESD 123

Query: 154 FKTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRA 213
           FKTYF+QFGT TDVVVMYDHNTQRPRGFGFITY+SEE+VEKVL KTFHELNGKMVEVKRA
Sbjct: 124 FKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183

Query: 214 VPKESSPVPNRSQLGA-YPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRG 273
           VPKE SP P+RS LGA Y YG  RV + LNGY QG+NP +VG YGLR D RFSPV  GR 
Sbjct: 184 VPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGAGRS 243

Query: 274 GLSPISPGYGIGLNLETGLNPNYGTGLNVGSNLSYGRVMSPSYGGNLNRYGSPNPMVYGG 333
           G +  S GYG+ +N + GL   +  G N   N+ YGR MSP Y GN NR+G P     GG
Sbjct: 244 GFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFG-PAVGYEGG 303

Query: 334 GNGGNGSILSSSVQNLWGNVGN-SVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASAS 393
             GGN S  SS  +NLWGN G  +   N+++  +    GG  +G N+L+G  G  G +  
Sbjct: 304 NGGGNSSFFSSVTRNLWGNNGGLNYNNNNTNSNSNTYMGGSSSGNNTLSGPFGNSGVNWG 363

Query: 394 LVHGEHSGSPFNAVNLDF-ASGDGSLTSGTTVGYARSVGTN----VSSASLYSAPNI--Y 453
              G ++      V   +  +G+     GT    AR+ G N     SS S  SA N   Y
Sbjct: 364 APGGGNNAVSNENVKFGYGGNGESGFGLGTGGYAARNPGANKAAPSSSFSSASATNNTGY 423

Query: 454 D-----EVHGNNDEGNSFYGHSSWQLLPTELEDSSSVGFGLGNA--ASDVISRNNG-GYT 510
           D     E +GN     + Y   +W+    E E  +   +G+G    +SDV +R++  GY 
Sbjct: 424 DTAGLAEFYGN----GAVYSDPTWRSPTPETEGPAPFSYGIGGGVPSSDVSARSSSPGYV 483

[Close]

BLAST of Cp4.1LG20g06600 vs. TAIR 10
Match: AT3G07810.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 448.4 bits (1152), Expect = 7.9e-126
Identity = 270/493 (54.77%), Postives = 327/493 (66.33%), Query Frame = 0


Query: 34  DPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAARV 93
           D GKLFIGGISWDT+E+RL+EYF SFGEV+E +I++DRTTGRARGFGFVVFADP VA  V
Sbjct: 4   DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63

Query: 94  VLEKHVIDGRTVEAKKAVPRDDQNVLSR-NNTGILGSP-GPTRTKKIFVGGLASTVTESD 153
           + EKH IDGR VEAKKAVPRDDQN+++R N++ I GSP GP RT+KIFVGGL S+VTESD
Sbjct: 64  ITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESD 123

Query: 154 FKTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRA 213
           FKTYF+QFGT TDVVVMYDHNTQRPRGFGFITY+SEE+VEKVL KTFHELNGKMVEVKRA
Sbjct: 124 FKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183

Query: 214 VPKESSPVPNRSQLGA-YPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRG 273
           VPKE SP P+RS LGA Y YG  RV + LNGY QG+NP +VG YGLR D RFSPV  GR 
Sbjct: 184 VPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGAGRS 243

Query: 274 GLSPISPGYGIGLNLETGLNPNYGTGLNVGSNLSYGRVMSPSYGGNLNRYGSPNPMVYGG 333
           G +  S GYG+ +N + GL   +  G N   N+ YGR MSP Y GN NR+G P     GG
Sbjct: 244 GFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFG-PAVGYEGG 303

Query: 334 GNGGNGSILSSSVQNLWGNVGN-SVGTNSSHLRTFPGSGGVHTGTNSLNGIGGLWGASAS 393
             GGN S  SS  +NLWGN G  +   N+++  +    GG  +G N+L+G  G  G +  
Sbjct: 304 NGGGNSSFFSSVTRNLWGNNGGLNYNNNNTNSNSNTYMGGSSSGNNTLSGPFGNSGVNWG 363

Query: 394 LVHGEHSGSPFNAVNLDF-ASGDGSLTSGTTVGYARSVGTN----VSSASLYSAPNI--Y 453
              G ++      V   +  +G+     GT    AR+ G N     SS S  SA N   Y
Sbjct: 364 APGGGNNAVSNENVKFGYGGNGESGFGLGTGGYAARNPGANKAAPSSSFSSASATNNTGY 423

Query: 454 D-----EVHGNNDEGNSFYGHSSWQLLPTELEDSSSVGFGLGNA--ASDVISRNNG-GYT 508
           D     E +GN     + Y   +W+    E E  +   +G+G    +SDV +R++  GY 
Sbjct: 424 DTAGLAEFYGN----GAVYSDPTWRSPTPETEGPAPFSYGIGGGVPSSDVSARSSSPGYV 483

[Close]

BLAST of Cp4.1LG20g06600 vs. TAIR 10
Match: AT5G47620.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 399.1 bits (1024), Expect = 5.5e-111
Identity = 243/483 (50.31%), Postives = 302/483 (62.53%), Query Frame = 0


Query: 33  MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 92
           M+  KLFIGGISW+T EDRLR+YF SFGEV+E +IM+DR TGRARGFGFVVFADP VA R
Sbjct: 3   MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62

Query: 93  VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 152
           VVL KH+IDG+ VEAKKAVPRDD  V +++N+ + GSPGP+ +KKIFVGGLAS+VTE++F
Sbjct: 63  VVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEF 122

Query: 153 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 212
           K YF QFG ITDVVVMYDH TQRPRGFGFI+Y+SEE+V+KVL KTFHELNGKMVEVK AV
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAV 182

Query: 213 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL 272
           PK+ +    R+Q+    +G  R+ S LN Y QG++P+ +  YG++ + R+SP    RGG 
Sbjct: 183 PKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRYSPAVGNRGGF 242

Query: 273 SPISPGYGIGLNLETGLNPNYGTGLNVGSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGN 332
           SP   GYGI LN E     NYG+G + G    +GR  SP Y  +L R+GS   M  GG +
Sbjct: 243 SPFGHGYGIELNFEPNQTQNYGSGSSGG----FGRPFSPGYAASLGRFGS--QMESGGAS 302

Query: 333 GGNGSILSSSVQN-LWGNVGNSVGTNSSHLR-TFPGSGGVHTGTNSLNGIGGLWGASA-- 392
            GNGS+L+++ +N LWGN G    +NS   R +F G+ G+    +SL  IG  WG  A  
Sbjct: 303 VGNGSVLNAAPKNHLWGNGGLGYMSNSPISRSSFSGNSGM----SSLGSIGDNWGTVARA 362

Query: 393 -SLVHGEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHG 452
            S  HGE  G    A+             G  VG     G +  S+ L            
Sbjct: 363 RSSYHGERGGVGLEAMR------------GVHVG-----GYSSGSSIL------------ 422

Query: 453 NNDEGNSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRG 511
              E +S Y  S W  LP + E+      GLG    D +SR   GY       NRQ N G
Sbjct: 423 ---EADSLYSDSMWLSLPAKAEE------GLGMGPLDFMSRGPAGYI------NRQPNGG 431

[Close]

BLAST of Cp4.1LG20g06600 vs. TAIR 10
Match: AT5G47620.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 399.1 bits (1024), Expect = 5.5e-111
Identity = 243/483 (50.31%), Postives = 302/483 (62.53%), Query Frame = 0


Query: 33  MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 92
           M+  KLFIGGISW+T EDRLR+YF SFGEV+E +IM+DR TGRARGFGFVVFADP VA R
Sbjct: 3   MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62

Query: 93  VVLEKHVIDGRTVEAKKAVPRDDQNVLSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 152
           VVL KH+IDG+ VEAKKAVPRDD  V +++N+ + GSPGP+ +KKIFVGGLAS+VTE++F
Sbjct: 63  VVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEF 122

Query: 153 KTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 212
           K YF QFG ITDVVVMYDH TQRPRGFGFI+Y+SEE+V+KVL KTFHELNGKMVEVK AV
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAV 182

Query: 213 PKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTSVGAYGLRSDDRFSPVTVGRGGL 272
           PK+ +    R+Q+    +G  R+ S LN Y QG++P+ +  YG++ + R+SP    RGG 
Sbjct: 183 PKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRYSPAVGNRGGF 242

Query: 273 SPISPGYGIGLNLETGLNPNYGTGLNVGSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGN 332
           SP   GYGI LN E     NYG+G + G    +GR  SP Y  +L R+GS   M  GG +
Sbjct: 243 SPFGHGYGIELNFEPNQTQNYGSGSSGG----FGRPFSPGYAASLGRFGS--QMESGGAS 302

Query: 333 GGNGSILSSSVQN-LWGNVGNSVGTNSSHLR-TFPGSGGVHTGTNSLNGIGGLWGASA-- 392
            GNGS+L+++ +N LWGN G    +NS   R +F G+ G+    +SL  IG  WG  A  
Sbjct: 303 VGNGSVLNAAPKNHLWGNGGLGYMSNSPISRSSFSGNSGM----SSLGSIGDNWGTVARA 362

Query: 393 -SLVHGEHSGSPFNAVNLDFASGDGSLTSGTTVGYARSVGTNVSSASLYSAPNIYDEVHG 452
            S  HGE  G    A+             G  VG     G +  S+ L            
Sbjct: 363 RSSYHGERGGVGLEAMR------------GVHVG-----GYSSGSSIL------------ 422

Query: 453 NNDEGNSFYGHSSWQLLPTELEDSSSVGFGLGNAASDVISRNNGGYTVGYGVSNRQSNRG 511
              E +S Y  S W  LP + E+      GLG    D +SR   GY       NRQ N G
Sbjct: 423 ---EADSLYSDSMWLSLPAKAEE------GLGMGPLDFMSRGPAGYI------NRQPNGG 431

[Close]

BLAST of Cp4.1LG20g06600 vs. TAIR 10
Match: AT5G47620.4 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 386.7 bits (992), Expect = 2.8e-107
Identity = 243/505 (48.12%), Postives = 302/505 (59.80%), Query Frame = 0


Query: 33  MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVVAAR 92
           M+  KLFIGGISW+T EDRLR+YF SFGEV+E +IM+DR TGRARGFGFVVFADP VA R
Sbjct: 3   MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62

Query: 93  VVLEKHVIDGR----------------------TVEAKKAVPRDDQNVLSRNNTGILGSP 152
           VVL KH+IDG+                       VEAKKAVPRDD  V +++N+ + GSP
Sbjct: 63  VVLLKHIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQGSP 122

Query: 153 GPTRTKKIFVGGLASTVTESDFKTYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESV 212
           GP+ +KKIFVGGLAS+VTE++FK YF QFG ITDVVVMYDH TQRPRGFGFI+Y+SEE+V
Sbjct: 123 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV 182

Query: 213 EKVLYKTFHELNGKMVEVKRAVPKESSPVPNRSQLGAYPYGFGRVGSYLNGYNQGYNPTS 272
           +KVL KTFHELNGKMVEVK AVPK+ +    R+Q+    +G  R+ S LN Y QG++P+ 
Sbjct: 183 DKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSP 242

Query: 273 VGAYGLRSDDRFSPVTVGRGGLSPISPGYGIGLNLETGLNPNYGTGLNVGSNLSYGRVMS 332
           +  YG++ + R+SP    RGG SP   GYGI LN E     NYG+G + G    +GR  S
Sbjct: 243 ISGYGVKPEVRYSPAVGNRGGFSPFGHGYGIELNFEPNQTQNYGSGSSGG----FGRPFS 302

Query: 333 PSYGGNLNRYGSPNPMVYGGGNGGNGSILSSSVQN-LWGNVGNSVGTNSSHLR-TFPGSG 392
           P Y  +L R+GS   M  GG + GNGS+L+++ +N LWGN G    +NS   R +F G+ 
Sbjct: 303 PGYAASLGRFGS--QMESGGASVGNGSVLNAAPKNHLWGNGGLGYMSNSPISRSSFSGNS 362

Query: 393 GVHTGTNSLNGIGGLWGASA---SLVHGEHSGSPFNAVNLDFASGDGSLTSGTTVGYARS 452
           G+    +SL  IG  WG  A   S  HGE  G    A+             G  VG    
Sbjct: 363 GM----SSLGSIGDNWGTVARARSSYHGERGGVGLEAMR------------GVHVG---- 422

Query: 453 VGTNVSSASLYSAPNIYDEVHGNNDEGNSFYGHSSWQLLPTELEDSSSVGFGLGNAASDV 511
            G +  S+ L               E +S Y  S W  LP + E+      GLG    D 
Sbjct: 423 -GYSSGSSIL---------------EADSLYSDSMWLSLPAKAEE------GLGMGPLDF 453

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g06600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W034	2.3e-61	39.29	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP...	[more]
Q96DH6	1.6e-46	39.38	RNA-binding protein Musashi homolog 2 OS=Homo sapiens OX=9606 GN=MSI2 PE=1 SV=1	[more]
Q96EP5	7.9e-46	40.94	DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1	[more]
Q920Q6	1.0e-45	38.35	RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1	[more]
Q9JII5	2.3e-45	40.16	DAZ-associated protein 1 OS=Mus musculus OX=10090 GN=Dazap1 PE=1 SV=2	[more]

BLAST of Cp4.1LG20g06600 vs. NCBI nr


Match Name	Identity	Description
XP_023520384.1	100.00	heterogeneous nuclear ribonucleoprotein 1 isoform X1 [Cucurbita pepo subsp. pepo...	[more]
XP_022927353.1	99.61	heterogeneous nuclear ribonucleoprotein 1-like isoform X1 [Cucurbita moschata]	[more]
XP_023001331.1	99.41	heterogeneous nuclear ribonucleoprotein 1 isoform X1 [Cucurbita maxima]	[more]
XP_023520385.1	100.00	heterogeneous nuclear ribonucleoprotein 1 isoform X2 [Cucurbita pepo subsp. pepo...	[more]
XP_022927354.1	99.79	heterogeneous nuclear ribonucleoprotein 1-like isoform X2 [Cucurbita moschata] >...	[more]

BLAST of Cp4.1LG20g06600 vs. ExPASy TrEMBL


Match Name	Identity	Description
A0A6J1EKS0	99.61	heterogeneous nuclear ribonucleoprotein 1-like isoform X1 OS=Cucurbita moschata ...	[more]
A0A6J1KIB5	99.41	heterogeneous nuclear ribonucleoprotein 1 isoform X1 OS=Cucurbita maxima OX=3661...	[more]
A0A6J1EHS3	99.79	heterogeneous nuclear ribonucleoprotein 1-like isoform X2 OS=Cucurbita moschata ...	[more]
A0A6J1KG87	99.58	heterogeneous nuclear ribonucleoprotein 1 isoform X2 OS=Cucurbita maxima OX=3661...	[more]
A0A6J1CL94	92.47	heterogeneous nuclear ribonucleoprotein 1 OS=Momordica charantia OX=3673 GN=LOC1...	[more]

BLAST of Cp4.1LG20g06600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07810.1	7.2e-127	54.95	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G07810.2	7.9e-126	54.77	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G47620.1	5.5e-111	50.31	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G47620.2	5.5e-111	50.31	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G47620.4	2.8e-107	48.12	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 137..209 e-value: 3.7E-24 score: 96.2 coord: 37..108 e-value: 1.2E-22 score: 91.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 138..196 e-value: 2.4E-16 score: 59.3 coord: 38..103 e-value: 3.2E-15 score: 55.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 136..213 score: 17.830454
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 36..112 score: 17.847509
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 133..222 e-value: 7.8E-27 score: 95.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 35..118 e-value: 1.4E-26 score: 94.5
None	No IPR available	PANTHER	PTHR48032:SF1	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE	coord: 33..510
None	No IPR available	PANTHER	PTHR48032	RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6	coord: 33..510
None	No IPR available	CDD	cd12325	RRM1_hnRNPA_hnRNPD_like	coord: 38..108 e-value: 7.61437E-36 score: 125.776
IPR034131	DAZ-associated protein 1, RNA recognition motif 2	CDD	cd12327	RRM2_DAZAP1	coord: 134..213 e-value: 3.89254E-48 score: 159.068
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 132..235
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 33..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g06600.1	Cp4.1LG20g06600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding