Cp4.1LG20g04330 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG20g04330
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Squamosa promoter-binding-like protein
Location	Cp4.1LG20: 2542327 .. 2545566 (+)
RNA-Seq Expression	Cp4.1LG20g04330
Synteny	Cp4.1LG20g04330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGTTCTCAAGGTATGTGGAAGCAACATTATTGGAGCAAAATTGGTTGGTTTTTTTAGTGTTATGAAAGAAATAAAATGAAAAGAAAAACATTTTTTTCCCCAAACCCATTTGTTNATTGGAGTTTGTGGTCCTCAGACCTCAGCTCTAGTAGTGTACTATTACTACTCTTATTGTCCTTCACTTCTTTTCTTTCCTCTGAAGCAACCAATTTCTTGATTCTTCTTCCTTTCCTTTTCTCTTCCTCTTCATTAGTCTCCGTTTTGGGTCTTCTGAAATGGCCACCGGAAAAGCCGACGGAAAAAGGAGGCTGAGCTACTACGACATGGAGGAAGAAGAGGAGGAGGAAGAGGAGGTGGAGGTTGTTGATGGAGAATTAGGGTTTGGTGGGGATTTCAATAAGAAGAAGAAGACTCTGTGTTCTGGTGGTGGTTCTAATAAAAAATCAGGATCTGGGTGTGGTGGAGAGGCTACGGCGGCGCCGTCGTGCCAGGCGGATAATTGCAATGCCGATCTGTCTAGTTCGAAGCGGTACCACTGCCGCCATAAGGTGTGTGAGTTTCATGCCAAGGCTCTGGCGGTTATGGTGGCCGGAATCCACCAACGGTTCTGCCAACAATGCAGCAGGTATTTTGGGACAAAAACCCTAATCTTAGATCTGTTTTTTTAATTATGTGGTTTAACCTATTTTAAAGGTAACGTAAAGATTAGATAATAATTCAGTATATAGTTAGTGAGAAAATTAGTATATGTTTTAACTGTTCTTCAATTAATTAACTCCAAAATTTAACTGTTTTCAGTGTAATTTTCTTCATCTCTTTGGGGTTTGGTTCATCCAAAAATAAATTACTGTTTATTCATCCCAAGACCATCAACTATGAAATAAATGAAGAAAATTGTAATTATAATAATGTAAAAATGGTTTATTTATTTATTTATTTATTCATTTTTCTACTTACTCAAGTTTTTGAAAATAAATAAATAAATAAATCAGTCTTGACCNTTTTTTTTTTTTTTTTTTTTGGTATAAACTTTTATTTATTTTTTTAAATTGAACCCTAAATTTAATTAAATGTTGAAAATTTTATTTTATTTTTTATTTTTTTTCACTCATATAAGCACAAAATTGTACAGTTCAATAAAATTTTCAAAATTTACGAGTTTTAACAAAATTTAGCTCTAATGTTCGTGATTTTTTGTATAACGATTCTTCGAAAGTGAATAGAAGGTAAATTTTGATATTCTTATTTAAATTTAAGATAAAGATAGTAACATTTATTTGAGATGTCTTTTAACTTCCTAAACATTAATGTAAATAGATAGTTTTTTCACAAAAATTTATTATAATCTTTACTATGGTAGAGAAATATATTTTATGAGGAACAAAATTTTACTATATAGTTTTAAATTTGATAATTTTAAAATATGAGAGAAAAGTTTTGAATCCTAACTTTAAATATAAAATTTTAACCTAAAACAAACTTTGATATATTAATGATGAGAGTAAAATAAAGAATAACAATAATAATAATGTAGTTTGAATATAGAAATGCTCTCTTTGTGAATCTTCATCAGTGTTACGAATTGCTTAATTTCTTGGTTTTTCAGGATATGGGAGCGTTATAAATTCATGTTAGTCTATATATCTCGAGAATAAGACATGATCTGACAATAGATGTCTTAATTGTTGAACGATATGTTCTTTAGGGTTTAAATAATTTTTATAGCGATATAGTGTTACATATTCATGCACATTTATGAACGTTACACCATGAAGCTGATTGATTATATGTAGTAGTGATCGTTATTGAGAAACTAAATATCCATCATTTGGGTTCCTGGAGATTTCATGGTCTTCAAGAGTTCGATGAAACAAAAAGGAGTTGCCGGAAGCGGTTGGCCGGACACAACCAGCGGCGGCGGAAGAGCTCATCGGATGTCCATGGCGGAACTTCAACCTAGCAATATGCAGAATGATGAAAGAAGGGGCATTTTGTTTTTAATTTTGTTGGTCAGTGCTTCCATTGTTACCAGATTTGCTTGCTCTCTCTCTTCTGTCAATCCAGCCAGCCTTTTGCTTATGCTCTGTTCTACAGACCAATTAGTTCATCTTTTGTATTAATCCCTTTGCAATGTGAAGTAAGATTATGGAGCATATCAGCTTTTGATTTACTTTCAATCTAATTCAACGAAACAATAAGGAATGGATGTCTACAATCAATGGCAGGACCATCAAAACTTATACTCTAAAGAAACAACATGAAATTTGACGAGGCGAGGAAACAGTTGAGTTAATCTCGGGCGATACCGAGAACTTTCATTGCTAGCTCCCAGCAGACGATTGCTGCTGCATTGGCAGGAAATGCTCGAAGTATGGTTGGACCTAATCCTGTATAGCATCCTCTAATTCCAGCGTTTTGGTATATCTAGAACAATGATTTGTTTCAGCATGTTGTGTAATTTTGAGCCAGAGATGAGAACTTGAATGAAGCAATGTCGAGAACGTCTTACTTACCGAGCGCAGGACTAGAAACGGATTTCTAGTGGCATTTTTATCTGGAGAAGTCTGGATTATGGTTTTGGCAACATCCAGGGGCAAAACAGCTAGCCAGAACTGGTTGAATTTGGAAACATTAGTCAACTTCACAACAATCAGATTAATAAGTCTTTCTATAGAATAACAAGGAATTTACTCAGAAGCTTACAGCCACACCACCAAGGCCACCAGTCAAAATCCCAATTCCCATGTCCATTACGTTGCCATGGACATTCGAAGTAGTACGCATGTAATACCGAACGTTCTCGTAAACGCTGAAAAATACAGCATTTCCTATTGATTCCCTTAAAAATGTTGTAAACCCTCCGCGGAAAATACCAGTAGCCTGCAAAACAGAGTGTCATTTGAAAACCAGATCACAAATGGGAGATACCCAAGTCAAGGATTGTCTTACCCCTTCTGTTTTTATAGTTTTAAGGGCACAATCGAGTGGACCGCTATATCTACTGGACACTGGAACAAGAGAATCAGTGCCTTGAACTTGCATCCTACACTGGAAAATCTTAAGAGTCATGAGCCTGACATGGGAACAAACCAAAGAAAACAAGAAACTCGTACATCATGATGTACCTACCTTCACTAACTCAGAAGGACATAGTATAAAGCTGATAATAGCTCCACCATAAGCTGCAGAAGGAATTACTACTTGTGGCCGTGGCCTACCATTTTGGTGGTCTCCCTTC

mRNA sequence

TGGGTTCTCAAGGTATGTGGAAGCAACATTATTGGAGCAAAATTGCAACCAATTTCTTGATTCTTCTTCCTTTCCTTTTCTCTTCCTCTTCATTAGTCTCCGTTTTGGGTCTTCTGAAATGGCCACCGGAAAAGCCGACGGAAAAAGGAGGCTGAGCTACTACGACATGGAGGAAGAAGAGGAGGAGGAAGAGGAGGTGGAGGTTGTTGATGGAGAATTAGGGTTTGGTGGGGATTTCAATAAGAAGAAGAAGACTCTGTGTTCTGGTGGTGGTTCTAATAAAAAATCAGGATCTGGGTGTGGTGGAGAGGCTACGGCGGCGCCGTCGTGCCAGGCGGATAATTGCAATGCCGATCTGTCTAGTTCGAAGCGGTACCACTGCCGCCATAAGGTGTGTGAGTTTCATGCCAAGGCTCTGGCGGTTATGGTGGCCGGAATCCACCAACGGTTCTGCCAACAATGCAGCAGATTTCATGGTCTTCAAGAGTTCGATGAAACAAAAAGGAGTTGCCGGAAGCGGTTGGCCGGACACAACCAGCGGCGGCGGAAGAGCTCATCGGATGTCCATGGCGGAACTTCAACCTAGCAATATGCAGAATGATGAAAGAAGGGGCATTTTGTTTTTAATTTTGTTGGTCAGTGCTTCCATTGTTACCAGATTTGCTTGCTCTCTCTCTTCTGTCAATCCAGCCAGCCTTTTGCTTATGCTCTGTTCTACAGACCAATTAGTTCATCTTTTGTATTAATCCCTTTGCAATGTGAAGTAAGATTATGGAGCATATCAGCTTTTGATTTACTTTCAATCTAATTCAACGAAACAATAAGGAATGGATGTCTACAATCAATGGCAGGACCATCAAAACTTATACTCTAAAGAAACAACATGAAATTTGACGAGGCGAGGAAACAGTTGAGTTAATCTCGGGCGATACCGAGAACTTTCATTGCTAGCTCCCAGCAGACGATTGCTGCTGCATTGGCAGGAAATGCTCGAAGTATGGTTGGACCTAATCCTGTATAGCATCCTCTAATTCCAGCGTTTTGGTATATCTAGAACAATGATTTGTTTCAGCATGTTGTGTAATTTTGAGCCAGAGATGAGAACTTGAATGAAGCAATGTCGAGAACGTCTTACTTACCGAGCGCAGGACTAGAAACGGATTTCTAGTGGCATTTTTATCTGGAGAAGTCTGGATTATGGTTTTGGCAACATCCAGGGGCAAAACAGCTAGCCAGAACTGGTTGAATTTGGAAACATTAGTCAACTTCACAACAATCAGATTAATAAGTCTTTCTATAGAATAACAAGGAATTTACTCAGAAGCTTACAGCCACACCACCAAGGCCACCAGTCAAAATCCCAATTCCCATGTCCATTACGTTGCCATGGACATTCGAAGTAGTACGCATGTAATACCGAACGTTCTCGTAAACGCTGAAAAATACAGCATTTCCTATTGATTCCCTTAAAAATGTTGTAAACCCTCCGCGGAAAATACCAGTAGCCTGCAAAACAGAGTGTCATTTGAAAACCAGATCACAAATGGGAGATACCCAAGTCAAGGATTGTCTTACCCCTTCTGTTTTTATAGTTTTAAGGGCACAATCGAGTGGACCGCTATATCTACTGGACACTGGAACAAGAGAATCAGTGCCTTGAACTTGCATCCTACACTGGAAAATCTTAAGAGTCATGAGCCTGACATGGGAACAAACCAAAGAAAACAAGAAACTCGTACATCATGATGTACCTACCTTCACTAACTCAGAAGGACATAGTATAAAGCTGATAATAGCTCCACCATAAGCTGCAGAAGGAATTACTACTTGTGGCCGTGGCCTACCATTTTGGTGGTCTCCCTTC

Coding sequence (CDS)

ATGGCCACCGGAAAAGCCGACGGAAAAAGGAGGCTGAGCTACTACGACATGGAGGAAGAAGAGGAGGAGGAAGAGGAGGTGGAGGTTGTTGATGGAGAATTAGGGTTTGGTGGGGATTTCAATAAGAAGAAGAAGACTCTGTGTTCTGGTGGTGGTTCTAATAAAAAATCAGGATCTGGGTGTGGTGGAGAGGCTACGGCGGCGCCGTCGTGCCAGGCGGATAATTGCAATGCCGATCTGTCTAGTTCGAAGCGGTACCACTGCCGCCATAAGGTGTGTGAGTTTCATGCCAAGGCTCTGGCGGTTATGGTGGCCGGAATCCACCAACGGTTCTGCCAACAATGCAGCAGATTTCATGGTCTTCAAGAGTTCGATGAAACAAAAAGGAGTTGCCGGAAGCGGTTGGCCGGACACAACCAGCGGCGGCGGAAGAGCTCATCGGATGTCCATGGCGGAACTTCAACCTAG

Protein sequence

MATGKADGKRRLSYYDMEEEEEEEEEVEVVDGELGFGGDFNKKKKTLCSGGGSNKKSGSGCGGEATAAPSCQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFHGLQEFDETKRSCRKRLAGHNQRRRKSSSDVHGGTST

Homology

[Close]

BLAST of Cp4.1LG20g04330 vs. ExPASy Swiss-Prot
Match: P93015 (Squamosa promoter-binding-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=SPL3 PE=1 SV=2)

HSP 1 Score: 133.7 bits (335), Expect = 1.8e-30
Identity = 78/149 (52.35%), Postives = 98/149 (65.77%), Query Frame = 0


Query: 1   MATGKADGKRRLSYYDMEEEEEEEEEVEVVDGELGFGGDFNKKKKTLCSGGGSNKKSGSG 60
           M   KA+GKR L   ++ EEEEEEEE E  D          KK+K               
Sbjct: 3   MRRSKAEGKRSLR--ELSEEEEEEEETEDED-TFEEEEALEKKQK--------------- 62

Query: 61  CGGEATAAPS-CQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFH 120
             G+AT++   CQ ++C AD+S +K+YH RHKVC+FHAKA  V ++G+HQRFCQQCSRFH
Sbjct: 63  --GKATSSSGVCQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQQCSRFH 122

Query: 121 GLQEFDETKRSCRKRLAGHNQRRRKSSSD 149
            L EFDE KRSCR+RLAGHN+RRRKS++D
Sbjct: 123 ALSEFDEAKRSCRRRLAGHNERRRKSTTD 131

[Close]

BLAST of Cp4.1LG20g04330 vs. ExPASy Swiss-Prot
Match: Q38741 (Squamosa promoter-binding protein 1 OS=Antirrhinum majus OX=4151 GN=SBP1 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.1e-30
Identity = 75/150 (50.00%), Postives = 97/150 (64.67%), Query Frame = 0


Query: 1   MATGKADGKRRLSYYDMEEEEEEEEEVEVVDGELGFGGDFNKKKKTLCSGGGSNKKSGSG 60
           M T K +GKR +     +E+ EEE+++          G+ +KK + L   G    K  SG
Sbjct: 1   MDTSKGEGKRVIKLPGSQEQGEEEDDI----------GEDSKKTRALTPSG----KRASG 60

Query: 61  CGGEATAAPSCQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFHG 120
                +   SCQ +NC A+++++K YH RHKVCEFHAKA  V+ +G+ QRFCQQCSRFH 
Sbjct: 61  -----STQRSCQVENCAAEMTNAKPYHRRHKVCEFHAKAPVVLHSGLQQRFCQQCSRFHE 120

Query: 121 LQEFDETKRSCRKRLAGHNQRRRKSSSDVH 151
           L EFDE KRSCR+RLAGHN+RRRKSS D H
Sbjct: 121 LSEFDEAKRSCRRRLAGHNERRRKSSHDTH 131

[Close]

BLAST of Cp4.1LG20g04330 vs. ExPASy Swiss-Prot
Match: Q38740 (Squamosa promoter-binding protein 2 OS=Antirrhinum majus OX=4151 GN=SBP2 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-29
Identity = 78/149 (52.35%), Postives = 96/149 (64.43%), Query Frame = 0


Query: 5   KADGKRRLSYYDMEEEEEEEEEVEVVDGELGFGGDFNKKKKTLCSGGGSNKKSG---SGC 64
           K  G     + + EE E+EEEE +    ++ F  +   KKK L  G GS  KSG   +  
Sbjct: 17  KLVGDEGSDFEEEEEGEDEEEEEQERVVKVNF-AESQLKKKKLNLGEGSGGKSGEKHTAS 76

Query: 65  GGEATAAPSCQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFHGL 124
           GG   A P C  +NC ADL + K+Y+ RH+VCE HAKA  V V G+ QRFCQQCSRFH L
Sbjct: 77  GGGVVAQPCCLVENCGADLRNCKKYYQRHRVCEVHAKAPVVSVEGLMQRFCQQCSRFHDL 136

Query: 125 QEFDETKRSCRKRLAGHNQRRRKSSSDVH 151
            EFD+TKRSCR+RLAGHN+RRRKSS + H
Sbjct: 137 SEFDQTKRSCRRRLAGHNERRRKSSLESH 164

[Close]

BLAST of Cp4.1LG20g04330 vs. ExPASy Swiss-Prot
Match: Q9S758 (Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=SPL5 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-26
Identity = 67/129 (51.94%), Postives = 83/129 (64.34%), Query Frame = 0


Query: 23  EEEEVEVVDGELGFGGDFNKKKKTLCSGGGSNKKSGSGCGGEATAAPSCQADNCNADLSS 82
           EEE    +DGE   GGD +K+KK +        +   G   +   +  CQ D C  +L+ 
Sbjct: 23  EEEMENGMDGEEEDGGDEDKRKKVM--------ERVRGPSTDRVPSRLCQVDRCTVNLTE 82

Query: 83  SKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFHGLQEFDETKRSCRKRLAGHNQRR 142
           +K+Y+ RH+VCE HAKA A  VAG+ QRFCQQCSRFH L EFDE KRSCR+RLAGHN+RR
Sbjct: 83  AKQYYRRHRVCEVHAKASAATVAGVRQRFCQQCSRFHELPEFDEAKRSCRRRLAGHNERR 142

Query: 143 RKSSSDVHG 152
           RK S D  G
Sbjct: 143 RKISGDSFG 143

[Close]

BLAST of Cp4.1LG20g04330 vs. ExPASy Swiss-Prot
Match: Q9S7P5 (Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=SPL12 PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.0e-25
Identity = 75/141 (53.19%), Postives = 90/141 (63.83%), Query Frame = 0


Query: 19  EEEEEEEEVEVVDGELGFGGDFNKKKKTLCSGG----GSNKKSGSGCGGEATAAPSCQAD 78
           E++++   V VV  E     D +  + TL  GG    G+  K     GG  + A  CQ D
Sbjct: 71  EKKKKRRAVTVVAMEEDNLKDDDAHRLTLNLGGNNIEGNGVKKTKLGGGIPSRAICCQVD 130

Query: 79  NCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFHGLQEFDETKRSCRKR 138
           NC ADLS  K YH RHKVCE H+KA   +V GI QRFCQQCSRFH L+EFDE KRSCR+R
Sbjct: 131 NCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFDEGKRSCRRR 190

Query: 139 LAGHNQRRRKSSSDVHG-GTS 155
           LAGHN+RRRK++ D  G GTS
Sbjct: 191 LAGHNKRRRKANPDTIGNGTS 211

[Close]

BLAST of Cp4.1LG20g04330 vs. NCBI nr
Match: XP_023520290.1 (squamosa promoter-binding-like protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 308 bits (789), Expect = 1.18e-105
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MATGKADGKRRLSYYDMEEEEEEEEEVEVVDGELGFGGDFNKKKKTLCSGGGSNKKSGSG 60
           MATGKADGKRRLSYYDMEEEEEEEEEVEVVDGELGFGGDFNKKKKTLCSGGGSNKKSGSG
Sbjct: 1   MATGKADGKRRLSYYDMEEEEEEEEEVEVVDGELGFGGDFNKKKKTLCSGGGSNKKSGSG 60

Query: 61  CGGEATAAPSCQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFHG 120
           CGGEATAAPSCQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFHG
Sbjct: 61  CGGEATAAPSCQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFHG 120

Query: 121 LQEFDETKRSCRKRLAGHNQRRRKSSSDVHGGTST 155
           LQEFDETKRSCRKRLAGHNQRRRKSSSDVHGGTST
Sbjct: 121 LQEFDETKRSCRKRLAGHNQRRRKSSSDVHGGTST 155

[Close]

BLAST of Cp4.1LG20g04330 vs. NCBI nr
Match: XP_023001757.1 (squamosa promoter-binding-like protein 3 [Cucurbita maxima])

HSP 1 Score: 296 bits (759), Expect = 4.44e-101
Identity = 151/155 (97.42%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MATGKADGKRRLSYYDMEEEEEEEEEVEVVDGELGFGGDFNKKKKTLCSGGGSNKKSGSG 60
           MATGKADGKRRL+YYDMEEEEEEEEEVEVVDGELGFGGDFNKKKKTL SGGGSNKKSGSG
Sbjct: 1   MATGKADGKRRLNYYDMEEEEEEEEEVEVVDGELGFGGDFNKKKKTLSSGGGSNKKSGSG 60

Query: 61  CGGEATAAPSCQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFHG 120
            GG ATAAPSCQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFHG
Sbjct: 61  YGGAATAAPSCQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFHG 120

Query: 121 LQEFDETKRSCRKRLAGHNQRRRKSSSDVHGGTST 155
           LQEFDETKRSCRKRLAGHNQRRRKSSSDVHGGTST
Sbjct: 121 LQEFDETKRSCRKRLAGHNQRRRKSSSDVHGGTST 155

[Close]

BLAST of Cp4.1LG20g04330 vs. NCBI nr
Match: XP_022927387.1 (squamosa promoter-binding-like protein 3 isoform X1 [Cucurbita moschata] >KAG6583985.1 Squamosa promoter-binding protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 296 bits (757), Expect = 9.27e-101
Identity = 152/156 (97.44%), Postives = 153/156 (98.08%), Query Frame = 0


Query: 1   MATGKADGKRRLSYYDMEEEEEEEEE-VEVVDGELGFGGDFNKKKKTLCSGGGSNKKSGS 60
           MATGKADGKRRL+YYDMEEEEEEEEE VEVVDGELGFGGDFNKKKKTLCSGGGSNKKSGS
Sbjct: 1   MATGKADGKRRLNYYDMEEEEEEEEEEVEVVDGELGFGGDFNKKKKTLCSGGGSNKKSGS 60

Query: 61  GCGGEATAAPSCQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFH 120
           G GG ATAAPSCQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFH
Sbjct: 61  GYGGAATAAPSCQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFH 120

Query: 121 GLQEFDETKRSCRKRLAGHNQRRRKSSSDVHGGTST 155
           GLQEFDETKRSCRKRLAGHNQRRRKSSSDVHGGTST
Sbjct: 121 GLQEFDETKRSCRKRLAGHNQRRRKSSSDVHGGTST 156

[Close]

BLAST of Cp4.1LG20g04330 vs. NCBI nr
Match: KAG7019608.1 (Squamosa promoter-binding protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 294 bits (753), Expect = 3.78e-100
Identity = 151/156 (96.79%), Postives = 152/156 (97.44%), Query Frame = 0


Query: 1   MATGKADGKRRLSYYDMEEEEEEEEE-VEVVDGELGFGGDFNKKKKTLCSGGGSNKKSGS 60
           MATGKADGKRRL+YYDMEEEEEEEEE VEVVDGELGFGGDFNKKKKTLCSGGGSNKKSGS
Sbjct: 1   MATGKADGKRRLNYYDMEEEEEEEEEEVEVVDGELGFGGDFNKKKKTLCSGGGSNKKSGS 60

Query: 61  GCGGEATAAPSCQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFH 120
           G GG ATA PSCQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFH
Sbjct: 61  GYGGAATAVPSCQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFH 120

Query: 121 GLQEFDETKRSCRKRLAGHNQRRRKSSSDVHGGTST 155
           GLQEFDETKRSCRKRLAGHNQRRRKSSSDVHGGTST
Sbjct: 121 GLQEFDETKRSCRKRLAGHNQRRRKSSSDVHGGTST 156

[Close]

BLAST of Cp4.1LG20g04330 vs. NCBI nr
Match: XP_038894994.1 (squamosa promoter-binding-like protein 3 isoform X1 [Benincasa hispida])

HSP 1 Score: 243 bits (619), Expect = 1.28e-79
Identity = 132/164 (80.49%), Postives = 137/164 (83.54%), Query Frame = 0


Query: 1   MATGKADGKRRLSYYDMEEEEEEEEEVEV---------VDGELGFGGDFNKKKKTLCSGG 60
           MATGKADGKRRL+YY+MEEEEEE+EE E          + GELGF GDFNKKKK L SG 
Sbjct: 1   MATGKADGKRRLNYYEMEEEEEEDEEEEEEEEDHEEQQIHGELGFAGDFNKKKKILTSGT 60

Query: 61  GSNKKSGSGCGGEATAAPSCQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRF 120
            SNKKSGSG GG A AAPSCQADNCNADLS SKRYH RHKVCEFHAKA AV VAGIHQRF
Sbjct: 61  SSNKKSGSGYGG-AAAAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVAVAGIHQRF 120

Query: 121 CQQCSRFHGLQEFDETKRSCRKRLAGHNQRRRKSSSDVHGGTST 155
           CQQCSRFHGLQEFDE KRSCRKRLAGHNQRRRKSSSDVHG + T
Sbjct: 121 CQQCSRFHGLQEFDEAKRSCRKRLAGHNQRRRKSSSDVHGESPT 163

[Close]

BLAST of Cp4.1LG20g04330 vs. ExPASy TrEMBL
Match: A0A6J1KHJ1 (Squamosa promoter-binding-like protein OS=Cucurbita maxima OX=3661 GN=LOC111495800 PE=4 SV=1)

HSP 1 Score: 296 bits (759), Expect = 2.15e-101
Identity = 151/155 (97.42%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MATGKADGKRRLSYYDMEEEEEEEEEVEVVDGELGFGGDFNKKKKTLCSGGGSNKKSGSG 60
           MATGKADGKRRL+YYDMEEEEEEEEEVEVVDGELGFGGDFNKKKKTL SGGGSNKKSGSG
Sbjct: 1   MATGKADGKRRLNYYDMEEEEEEEEEVEVVDGELGFGGDFNKKKKTLSSGGGSNKKSGSG 60

Query: 61  CGGEATAAPSCQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFHG 120
            GG ATAAPSCQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFHG
Sbjct: 61  YGGAATAAPSCQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFHG 120

Query: 121 LQEFDETKRSCRKRLAGHNQRRRKSSSDVHGGTST 155
           LQEFDETKRSCRKRLAGHNQRRRKSSSDVHGGTST
Sbjct: 121 LQEFDETKRSCRKRLAGHNQRRRKSSSDVHGGTST 155

[Close]

BLAST of Cp4.1LG20g04330 vs. ExPASy TrEMBL
Match: A0A6J1EH14 (Squamosa promoter-binding-like protein OS=Cucurbita moschata OX=3662 GN=LOC111434224 PE=4 SV=1)

HSP 1 Score: 296 bits (757), Expect = 4.49e-101
Identity = 152/156 (97.44%), Postives = 153/156 (98.08%), Query Frame = 0


Query: 1   MATGKADGKRRLSYYDMEEEEEEEEE-VEVVDGELGFGGDFNKKKKTLCSGGGSNKKSGS 60
           MATGKADGKRRL+YYDMEEEEEEEEE VEVVDGELGFGGDFNKKKKTLCSGGGSNKKSGS
Sbjct: 1   MATGKADGKRRLNYYDMEEEEEEEEEEVEVVDGELGFGGDFNKKKKTLCSGGGSNKKSGS 60

Query: 61  GCGGEATAAPSCQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFH 120
           G GG ATAAPSCQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFH
Sbjct: 61  GYGGAATAAPSCQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFH 120

Query: 121 GLQEFDETKRSCRKRLAGHNQRRRKSSSDVHGGTST 155
           GLQEFDETKRSCRKRLAGHNQRRRKSSSDVHGGTST
Sbjct: 121 GLQEFDETKRSCRKRLAGHNQRRRKSSSDVHGGTST 156

[Close]

BLAST of Cp4.1LG20g04330 vs. ExPASy TrEMBL
Match: A0A6J1K2Z2 (Squamosa promoter-binding-like protein OS=Cucurbita maxima OX=3661 GN=LOC111490194 PE=4 SV=1)

HSP 1 Score: 233 bits (595), Expect = 2.45e-76
Identity = 129/158 (81.65%), Postives = 134/158 (84.81%), Query Frame = 0


Query: 1   MATGKADGKRRLSYYDMEEEEEEEEEV---EVVDGELGFGGDFNKKKKTLCSGGGSNKKS 60
           MATGKADGKRRL+YYD EE+EEEEEE    E  DGELGFG DFNKKKK +  GGGSNK S
Sbjct: 1   MATGKADGKRRLNYYDTEEDEEEEEEEDEEEDGDGELGFGEDFNKKKK-IVGGGGSNKGS 60

Query: 61  GSGCGGEATAA----PSCQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQ 120
           GSG GG A AA    PSCQADNC+ADLS SKRYH RHKVCEFHAKA AV+VAGIHQRFCQ
Sbjct: 61  GSGYGGAAAAAVAVAPSCQADNCSADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRFCQ 120

Query: 121 QCSRFHGLQEFDETKRSCRKRLAGHNQRRRKSSSDVHG 151
           QCSRFHGL EFD TKRSCRKRLAGHNQRRRKSSSDVHG
Sbjct: 121 QCSRFHGLMEFDLTKRSCRKRLAGHNQRRRKSSSDVHG 157

[Close]

BLAST of Cp4.1LG20g04330 vs. ExPASy TrEMBL
Match: A0A0A0LSD9 (Squamosa promoter-binding-like protein OS=Cucumis sativus OX=3659 GN=Csa_1G074980 PE=4 SV=1)

HSP 1 Score: 233 bits (594), Expect = 3.84e-76
Identity = 126/162 (77.78%), Postives = 133/162 (82.10%), Query Frame = 0


Query: 1   MATGKADGKRRLSYYDMEEEEEEEEEVEV-----VDGELGFGGDFNKKKKTLCSGGGSNK 60
           MATGKADGKRRLSYY+MEEE+EE+EE +      +D ELGF GDFNKKKK   SGG SNK
Sbjct: 1   MATGKADGKRRLSYYEMEEEDEEDEEEDEDEEQEIDAELGFSGDFNKKKKIFTSGGSSNK 60

Query: 61  KSGSGCGGEATAAPS--CQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQ 120
           KS S  GG   AAP   CQADNCNADLSSSKRYH RHKVCEFHAKA  V V GI QRFCQ
Sbjct: 61  KSASAFGGAPAAAPPPPCQADNCNADLSSSKRYHRRHKVCEFHAKAPVVPVTGIDQRFCQ 120

Query: 121 QCSRFHGLQEFDETKRSCRKRLAGHNQRRRKSSSDVHGGTST 155
           QCSRFHGLQEFDETKRSCRKRLAGHNQRRRKSSSD+HG +ST
Sbjct: 121 QCSRFHGLQEFDETKRSCRKRLAGHNQRRRKSSSDLHGESST 162

[Close]

BLAST of Cp4.1LG20g04330 vs. ExPASy TrEMBL
Match: A0A1S3B6H6 (squamosa promoter-binding-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103486540 PE=4 SV=1)

HSP 1 Score: 232 bits (592), Expect = 9.15e-76
Identity = 127/167 (76.05%), Postives = 135/167 (80.84%), Query Frame = 0


Query: 1   MATGKADGKRRLSYYDMEEEEEEEEEVE----------VVDGELGFGGDFNKKKKTLCSG 60
           MATGKADGKRRL+YY+MEEE+EE+EE E          +  G LGF GDFNKKKK L SG
Sbjct: 1   MATGKADGKRRLNYYEMEEEDEEDEEEEEEEDEDEEQEIDGGGLGFSGDFNKKKKVLTSG 60

Query: 61  GGSNKKSGSG--CGGEATAAPSCQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIH 120
           G SNKKSGSG   G  A A P CQADNCNADLS SKRYH RHKVCEFHAKA AV VAGI 
Sbjct: 61  GSSNKKSGSGFGTGPPAAAPPPCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVAVAGID 120

Query: 121 QRFCQQCSRFHGLQEFDETKRSCRKRLAGHNQRRRKSSSDVHGGTST 155
           QRFCQQCSRFHGLQEFD+TKRSCRKRLAGHNQRRRKSSSD+HG +ST
Sbjct: 121 QRFCQQCSRFHGLQEFDDTKRSCRKRLAGHNQRRRKSSSDLHGESST 167

[Close]

BLAST of Cp4.1LG20g04330 vs. TAIR 10
Match: AT2G33810.1 (squamosa promoter binding protein-like 3 )

HSP 1 Score: 133.7 bits (335), Expect = 1.3e-31
Identity = 78/149 (52.35%), Postives = 98/149 (65.77%), Query Frame = 0


Query: 1   MATGKADGKRRLSYYDMEEEEEEEEEVEVVDGELGFGGDFNKKKKTLCSGGGSNKKSGSG 60
           M   KA+GKR L   ++ EEEEEEEE E  D          KK+K               
Sbjct: 3   MRRSKAEGKRSLR--ELSEEEEEEEETEDED-TFEEEEALEKKQK--------------- 62

Query: 61  CGGEATAAPS-CQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFH 120
             G+AT++   CQ ++C AD+S +K+YH RHKVC+FHAKA  V ++G+HQRFCQQCSRFH
Sbjct: 63  --GKATSSSGVCQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQQCSRFH 122

Query: 121 GLQEFDETKRSCRKRLAGHNQRRRKSSSD 149
            L EFDE KRSCR+RLAGHN+RRRKS++D
Sbjct: 123 ALSEFDEAKRSCRRRLAGHNERRRKSTTD 131

[Close]

BLAST of Cp4.1LG20g04330 vs. TAIR 10
Match: AT3G15270.1 (squamosa promoter binding protein-like 5 )

HSP 1 Score: 120.9 bits (302), Expect = 8.8e-28
Identity = 67/129 (51.94%), Postives = 83/129 (64.34%), Query Frame = 0


Query: 23  EEEEVEVVDGELGFGGDFNKKKKTLCSGGGSNKKSGSGCGGEATAAPSCQADNCNADLSS 82
           EEE    +DGE   GGD +K+KK +        +   G   +   +  CQ D C  +L+ 
Sbjct: 23  EEEMENGMDGEEEDGGDEDKRKKVM--------ERVRGPSTDRVPSRLCQVDRCTVNLTE 82

Query: 83  SKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFHGLQEFDETKRSCRKRLAGHNQRR 142
           +K+Y+ RH+VCE HAKA A  VAG+ QRFCQQCSRFH L EFDE KRSCR+RLAGHN+RR
Sbjct: 83  AKQYYRRHRVCEVHAKASAATVAGVRQRFCQQCSRFHELPEFDEAKRSCRRRLAGHNERR 142

Query: 143 RKSSSDVHG 152
           RK S D  G
Sbjct: 143 RKISGDSFG 143

[Close]

BLAST of Cp4.1LG20g04330 vs. TAIR 10
Match: AT1G53160.2 (squamosa promoter binding protein-like 4 )

HSP 1 Score: 117.9 bits (294), Expect = 7.5e-27
Identity = 68/133 (51.13%), Postives = 84/133 (63.16%), Query Frame = 0


Query: 16  DMEEEEEEEEEVEVVDGELGFGGDFNKKKKTLCSGGGSNKKSGSGCGGEATAAPSCQADN 75
           DME + +EEEEV         G D  +  +   + GGS +               CQ D 
Sbjct: 22  DMETDTDEEEEV---------GRDRVRGSRGSINRGGSLR--------------LCQVDR 81

Query: 76  CNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFHGLQEFDETKRSCRKRL 135
           C AD+  +K YH RHKVCE HAKA +V ++G++QRFCQQCSRFH LQEFDE KRSCR+RL
Sbjct: 82  CTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRL 131

Query: 136 AGHNQRRRKSSSD 149
           AGHN+RRRKSS +
Sbjct: 142 AGHNERRRKSSGE 131

[Close]

BLAST of Cp4.1LG20g04330 vs. TAIR 10
Match: AT1G53160.1 (squamosa promoter binding protein-like 4 )

HSP 1 Score: 117.9 bits (294), Expect = 7.5e-27
Identity = 68/133 (51.13%), Postives = 84/133 (63.16%), Query Frame = 0


Query: 16  DMEEEEEEEEEVEVVDGELGFGGDFNKKKKTLCSGGGSNKKSGSGCGGEATAAPSCQADN 75
           DME + +EEEEV         G D  +  +   + GGS +               CQ D 
Sbjct: 22  DMETDTDEEEEV---------GRDRVRGSRGSINRGGSLR--------------LCQVDR 81

Query: 76  CNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFHGLQEFDETKRSCRKRL 135
           C AD+  +K YH RHKVCE HAKA +V ++G++QRFCQQCSRFH LQEFDE KRSCR+RL
Sbjct: 82  CTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRL 131

Query: 136 AGHNQRRRKSSSD 149
           AGHN+RRRKSS +
Sbjct: 142 AGHNERRRKSSGE 131

[Close]

BLAST of Cp4.1LG20g04330 vs. TAIR 10
Match: AT3G60030.1 (squamosa promoter-binding protein-like 12 )

HSP 1 Score: 117.9 bits (294), Expect = 7.5e-27
Identity = 75/141 (53.19%), Postives = 90/141 (63.83%), Query Frame = 0


Query: 19  EEEEEEEEVEVVDGELGFGGDFNKKKKTLCSGG----GSNKKSGSGCGGEATAAPSCQAD 78
           E++++   V VV  E     D +  + TL  GG    G+  K     GG  + A  CQ D
Sbjct: 71  EKKKKRRAVTVVAMEEDNLKDDDAHRLTLNLGGNNIEGNGVKKTKLGGGIPSRAICCQVD 130

Query: 79  NCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRFCQQCSRFHGLQEFDETKRSCRKR 138
           NC ADLS  K YH RHKVCE H+KA   +V GI QRFCQQCSRFH L+EFDE KRSCR+R
Sbjct: 131 NCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFDEGKRSCRRR 190

Query: 139 LAGHNQRRRKSSSDVHG-GTS 155
           LAGHN+RRRK++ D  G GTS
Sbjct: 191 LAGHNKRRRKANPDTIGNGTS 211

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g04330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93015	1.8e-30	52.35	Squamosa promoter-binding-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=SPL3...	[more]
Q38741	4.1e-30	50.00	Squamosa promoter-binding protein 1 OS=Antirrhinum majus OX=4151 GN=SBP1 PE=2 SV...	[more]
Q38740	1.2e-29	52.35	Squamosa promoter-binding protein 2 OS=Antirrhinum majus OX=4151 GN=SBP2 PE=2 SV...	[more]
Q9S758	1.2e-26	51.94	Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=SPL5...	[more]
Q9S7P5	1.0e-25	53.19	Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=SPL...	[more]

BLAST of Cp4.1LG20g04330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023520290.1	1.18e-105	100.00	squamosa promoter-binding-like protein 3 [Cucurbita pepo subsp. pepo]	[more]
XP_023001757.1	4.44e-101	97.42	squamosa promoter-binding-like protein 3 [Cucurbita maxima]	[more]
XP_022927387.1	9.27e-101	97.44	squamosa promoter-binding-like protein 3 isoform X1 [Cucurbita moschata] >KAG658...	[more]
KAG7019608.1	3.78e-100	96.79	Squamosa promoter-binding protein 1, partial [Cucurbita argyrosperma subsp. argy...	[more]
XP_038894994.1	1.28e-79	80.49	squamosa promoter-binding-like protein 3 isoform X1 [Benincasa hispida]	[more]

BLAST of Cp4.1LG20g04330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KHJ1	2.15e-101	97.42	Squamosa promoter-binding-like protein OS=Cucurbita maxima OX=3661 GN=LOC1114958...	[more]
A0A6J1EH14	4.49e-101	97.44	Squamosa promoter-binding-like protein OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1K2Z2	2.45e-76	81.65	Squamosa promoter-binding-like protein OS=Cucurbita maxima OX=3661 GN=LOC1114901...	[more]
A0A0A0LSD9	3.84e-76	77.78	Squamosa promoter-binding-like protein OS=Cucumis sativus OX=3659 GN=Csa_1G07498...	[more]
A0A1S3B6H6	9.15e-76	76.05	squamosa promoter-binding-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103486540...	[more]

BLAST of Cp4.1LG20g04330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33810.1	1.3e-31	52.35	squamosa promoter binding protein-like 3	[more]
AT3G15270.1	8.8e-28	51.94	squamosa promoter binding protein-like 5	[more]
AT1G53160.2	7.5e-27	51.13	squamosa promoter binding protein-like 4	[more]
AT1G53160.1	7.5e-27	51.13	squamosa promoter binding protein-like 4	[more]
AT3G60030.1	7.5e-27	53.19	squamosa promoter-binding protein-like 12	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036893	SBP domain superfamily	GENE3D	4.10.1100.10		coord: 62..132 e-value: 6.3E-32 score: 111.5
IPR036893	SBP domain superfamily	SUPERFAMILY	103612	SBT domain	coord: 69..149
IPR004333	SBP domain	PFAM	PF03110	SBP	coord: 71..144 e-value: 7.8E-32 score: 109.4
IPR004333	SBP domain	PROSITE	PS51141	ZF_SBP	coord: 68..145 score: 31.248148
None	No IPR available	PIRSR	PIRSR037575-1	PIRSR037575-1	coord: 63..146 e-value: 6.3E-43 score: 143.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..69
IPR044817	Squamosa promoter-binding-like protein	PANTHER	PTHR31251	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	coord: 38..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g04330.1	Cp4.1LG20g04330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009908	flower development
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046872	metal ion binding