Cp4.1LG20g02560 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG20g02560
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Mediator of RNA polymerase II transcription subunit 13, putative
Location	Cp4.1LG20: 1478579 .. 1478971 (-)
RNA-Seq Expression	Cp4.1LG20g02560
Synteny	Cp4.1LG20g02560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAACAAACCAGTGGTTGAAGACGAGGATGGTCATCTCGAAATCCTCAAGGCGGTGGCGCAGGCATGGCAGAGTCACACCGGTACTTCAAAGCCTGCAAGTGAATTCGACGCCCATCGCCGCAATTGCAGAGCCAATCCATCTCGGTTCAAGCTTGAGGCGATACGAAGCCGGTCTTCCGTCGGCGGCATGAGGAGATGGGACTTCGGGCAGTCGCTGTGGGATTCGTATGAGATTGTGGCGGTTTCGAAGAAGCTGGAGACGGGGTTGGTGCTCGACGGCGACGGGTTTCGAGAGGCCAATGGCGGTGGGCGGAATCAAAGGAAACAGCGAGAGAGTTGTAATAGTTTGAGAAATTTGTTCAATAGAACTTCGAGGAGATTCAATTAG

mRNA sequence

ATGAAGAACAAACCAGTGGTTGAAGACGAGGATGGTCATCTCGAAATCCTCAAGGCGGTGGCGCAGGCATGGCAGAGTCACACCGGTACTTCAAAGCCTGCAAGTGAATTCGACGCCCATCGCCGCAATTGCAGAGCCAATCCATCTCGGTTCAAGCTTGAGGCGATACGAAGCCGGTCTTCCGTCGGCGGCATGAGGAGATGGGACTTCGGGCAGTCGCTGTGGGATTCGTATGAGATTGTGGCGGTTTCGAAGAAGCTGGAGACGGGGTTGGTGCTCGACGGCGACGGGTTTCGAGAGGCCAATGGCGGTGGGCGGAATCAAAGGAAACAGCGAGAGAGTTGTAATAGTTTGAGAAATTTGTTCAATAGAACTTCGAGGAGATTCAATTAG

Coding sequence (CDS)

ATGAAGAACAAACCAGTGGTTGAAGACGAGGATGGTCATCTCGAAATCCTCAAGGCGGTGGCGCAGGCATGGCAGAGTCACACCGGTACTTCAAAGCCTGCAAGTGAATTCGACGCCCATCGCCGCAATTGCAGAGCCAATCCATCTCGGTTCAAGCTTGAGGCGATACGAAGCCGGTCTTCCGTCGGCGGCATGAGGAGATGGGACTTCGGGCAGTCGCTGTGGGATTCGTATGAGATTGTGGCGGTTTCGAAGAAGCTGGAGACGGGGTTGGTGCTCGACGGCGACGGGTTTCGAGAGGCCAATGGCGGTGGGCGGAATCAAAGGAAACAGCGAGAGAGTTGTAATAGTTTGAGAAATTTGTTCAATAGAACTTCGAGGAGATTCAATTAG

Protein sequence

MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREANGGGRNQRKQRESCNSLRNLFNRTSRRFN

Homology

[Close]

BLAST of Cp4.1LG20g02560 vs. NCBI nr
Match: XP_023519325.1 (uncharacterized protein LOC111782756 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264 bits (675), Expect = 9.58e-89
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS 60
           MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS
Sbjct: 24  MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS 83

Query: 61  SVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREANGGGRNQRKQRESCNSLRN 120
           SVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREANGGGRNQRKQRESCNSLRN
Sbjct: 84  SVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREANGGGRNQRKQRESCNSLRN 143

Query: 121 LFNRTSRRFN 130
           LFNRTSRRFN
Sbjct: 144 LFNRTSRRFN 153

[Close]

BLAST of Cp4.1LG20g02560 vs. NCBI nr
Match: KAG6584197.1 (hypothetical protein SDJN03_20129, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019794.1 hypothetical protein SDJN02_18757, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 262 bits (670), Expect = 2.55e-88
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS 60
           MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS
Sbjct: 1   MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS 60

Query: 61  SVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREANGGGRNQRKQRESCNSLRN 120
           SVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREA+GGGRNQRKQRESCNSLRN
Sbjct: 61  SVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREADGGGRNQRKQRESCNSLRN 120

Query: 121 LFNRTSRRFN 130
           LFNRTSRRFN
Sbjct: 121 LFNRTSRRFN 130

[Close]

BLAST of Cp4.1LG20g02560 vs. NCBI nr
Match: XP_022923731.1 (uncharacterized protein LOC111431350 [Cucurbita moschata])

HSP 1 Score: 262 bits (670), Expect = 5.55e-88
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS 60
           MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS
Sbjct: 24  MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS 83

Query: 61  SVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREANGGGRNQRKQRESCNSLRN 120
           SVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREA+GGGRNQRKQRESCNSLRN
Sbjct: 84  SVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREADGGGRNQRKQRESCNSLRN 143

Query: 121 LFNRTSRRFN 130
           LFNRTSRRFN
Sbjct: 144 LFNRTSRRFN 153

[Close]

BLAST of Cp4.1LG20g02560 vs. NCBI nr
Match: XP_023001654.1 (uncharacterized protein LOC111495727 [Cucurbita maxima])

HSP 1 Score: 255 bits (651), Expect = 2.02e-85
Identity = 126/130 (96.92%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS 60
           MKNK VVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS
Sbjct: 1   MKNKAVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS 60

Query: 61  SVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREANGGGRNQRKQRESCNSLRN 120
           SV GMRRWDFGQSLWDSYEIVAVSKKLE GLVLDGDGFREA+GGGRNQRKQRESCNSLRN
Sbjct: 61  SVAGMRRWDFGQSLWDSYEIVAVSKKLEAGLVLDGDGFREADGGGRNQRKQRESCNSLRN 120

Query: 121 LFNRTSRRFN 130
           LFNRTSRRFN
Sbjct: 121 LFNRTSRRFN 130

[Close]

BLAST of Cp4.1LG20g02560 vs. NCBI nr
Match: XP_011651756.1 (uncharacterized protein LOC105434938 [Cucumis sativus])

HSP 1 Score: 202 bits (513), Expect = 2.70e-64
Identity = 107/135 (79.26%), Postives = 115/135 (85.19%), Query Frame = 0


Query: 1   MKNKP---VVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIR 60
           MK KP    + D+D HLEILKAVAQAW SHTGTSKPASEFDAHRRN R  PSRFK+EAIR
Sbjct: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60

Query: 61  SRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREA-NGGGRNQRKQRESCN 120
           SR+S    RRWDF QSLWDSYEIV VSKKLE GLVLDGDGFREA +GGGR+QRK+RESCN
Sbjct: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNR-TSRRFN 130
           SLRNLFNR +SRRFN
Sbjct: 121 SLRNLFNRASSRRFN 135

[Close]

BLAST of Cp4.1LG20g02560 vs. ExPASy TrEMBL
Match: A0A6J1E7J5 (uncharacterized protein LOC111431350 OS=Cucurbita moschata OX=3662 GN=LOC111431350 PE=4 SV=1)

HSP 1 Score: 262 bits (670), Expect = 2.69e-88
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS 60
           MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS
Sbjct: 24  MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS 83

Query: 61  SVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREANGGGRNQRKQRESCNSLRN 120
           SVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREA+GGGRNQRKQRESCNSLRN
Sbjct: 84  SVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREADGGGRNQRKQRESCNSLRN 143

Query: 121 LFNRTSRRFN 130
           LFNRTSRRFN
Sbjct: 144 LFNRTSRRFN 153

[Close]

BLAST of Cp4.1LG20g02560 vs. ExPASy TrEMBL
Match: A0A6J1KNC1 (uncharacterized protein LOC111495727 OS=Cucurbita maxima OX=3661 GN=LOC111495727 PE=4 SV=1)

HSP 1 Score: 255 bits (651), Expect = 9.77e-86
Identity = 126/130 (96.92%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS 60
           MKNK VVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS
Sbjct: 1   MKNKAVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS 60

Query: 61  SVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREANGGGRNQRKQRESCNSLRN 120
           SV GMRRWDFGQSLWDSYEIVAVSKKLE GLVLDGDGFREA+GGGRNQRKQRESCNSLRN
Sbjct: 61  SVAGMRRWDFGQSLWDSYEIVAVSKKLEAGLVLDGDGFREADGGGRNQRKQRESCNSLRN 120

Query: 121 LFNRTSRRFN 130
           LFNRTSRRFN
Sbjct: 121 LFNRTSRRFN 130

[Close]

BLAST of Cp4.1LG20g02560 vs. ExPASy TrEMBL
Match: A0A0A0LTM3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046880 PE=4 SV=1)

HSP 1 Score: 202 bits (513), Expect = 1.31e-64
Identity = 107/135 (79.26%), Postives = 115/135 (85.19%), Query Frame = 0


Query: 1   MKNKP---VVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIR 60
           MK KP    + D+D HLEILKAVAQAW SHTGTSKPASEFDAHRRN R  PSRFK+EAIR
Sbjct: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60

Query: 61  SRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREA-NGGGRNQRKQRESCN 120
           SR+S    RRWDF QSLWDSYEIV VSKKLE GLVLDGDGFREA +GGGR+QRK+RESCN
Sbjct: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNR-TSRRFN 130
           SLRNLFNR +SRRFN
Sbjct: 121 SLRNLFNRASSRRFN 135

[Close]

BLAST of Cp4.1LG20g02560 vs. ExPASy TrEMBL
Match: A0A5A7UNW1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003950 PE=4 SV=1)

HSP 1 Score: 200 bits (508), Expect = 7.57e-64
Identity = 106/135 (78.52%), Postives = 114/135 (84.44%), Query Frame = 0


Query: 1   MKNKP---VVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIR 60
           MK KP    + D D HLEILKAVAQAW +HTGTSKPASEFDAHRRN R  PSRFKLEAIR
Sbjct: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60

Query: 61  SRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREA-NGGGRNQRKQRESCN 120
           SR++    RRWDF QSLWDSYEIV VSKKLE GLVLDGDGFREA +GGGR+QRK+RESCN
Sbjct: 61  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNR-TSRRFN 130
           SLRNLFNR +SRRFN
Sbjct: 121 SLRNLFNRASSRRFN 135

[Close]

BLAST of Cp4.1LG20g02560 vs. ExPASy TrEMBL
Match: A0A1S3AX17 (uncharacterized protein LOC103483829 OS=Cucumis melo OX=3656 GN=LOC103483829 PE=4 SV=1)

HSP 1 Score: 200 bits (508), Expect = 7.57e-64
Identity = 106/135 (78.52%), Postives = 114/135 (84.44%), Query Frame = 0


Query: 1   MKNKP---VVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIR 60
           MK KP    + D D HLEILKAVAQAW +HTGTSKPASEFDAHRRN R  PSRFKLEAIR
Sbjct: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60

Query: 61  SRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREA-NGGGRNQRKQRESCN 120
           SR++    RRWDF QSLWDSYEIV VSKKLE GLVLDGDGFREA +GGGR+QRK+RESCN
Sbjct: 61  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNR-TSRRFN 130
           SLRNLFNR +SRRFN
Sbjct: 121 SLRNLFNRASSRRFN 135

[Close]

BLAST of Cp4.1LG20g02560 vs. TAIR 10
Match: AT4G24700.1 (unknown protein; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 95.1 bits (235), Expect = 4.3e-20
Identity = 58/133 (43.61%), Postives = 84/133 (63.16%), Query Frame = 0


Query: 2   KNKPVVEDEDGHLEILKAVAQAWQSHTGTSK-PASEFDAHRRNC--RANPSRFKLEAIRS 61
           +N+   E++   LE++KA AQAW SH+ TSK    EFDA R++   +   SRFK EA+ +
Sbjct: 10  ENEEEEEEKKKRLELMKAAAQAWLSHSQTSKHTVLEFDAQRKHAFVKGKASRFKTEALSA 69

Query: 62  RSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREANGGG---RNQRKQRESC 121
           +     +  W+FGQSLWD YEI++VSKKLE  L L+   F  ++  G     ++K R+S 
Sbjct: 70  KHHPSFL-DWEFGQSLWDPYEILSVSKKLERELTLEEQTFSSSDNDGLKKMKKKKTRDSR 129

Query: 122 NSLRNLFNRTSRR 129
           NSLR+LF R+S +
Sbjct: 130 NSLRSLFTRSSSK 141

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g02560 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG20g02560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023519325.1	9.58e-89	100.00	uncharacterized protein LOC111782756 [Cucurbita pepo subsp. pepo]	[more]
KAG6584197.1	2.55e-88	99.23	hypothetical protein SDJN03_20129, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022923731.1	5.55e-88	99.23	uncharacterized protein LOC111431350 [Cucurbita moschata]	[more]
XP_023001654.1	2.02e-85	96.92	uncharacterized protein LOC111495727 [Cucurbita maxima]	[more]
XP_011651756.1	2.70e-64	79.26	uncharacterized protein LOC105434938 [Cucumis sativus]	[more]

BLAST of Cp4.1LG20g02560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E7J5	2.69e-88	99.23	uncharacterized protein LOC111431350 OS=Cucurbita moschata OX=3662 GN=LOC1114313...	[more]
A0A6J1KNC1	9.77e-86	96.92	uncharacterized protein LOC111495727 OS=Cucurbita maxima OX=3661 GN=LOC111495727...	[more]
A0A0A0LTM3	1.31e-64	79.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046880 PE=4 SV=1	[more]
A0A5A7UNW1	7.57e-64	78.52	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AX17	7.57e-64	78.52	uncharacterized protein LOC103483829 OS=Cucumis melo OX=3656 GN=LOC103483829 PE=...	[more]

BLAST of Cp4.1LG20g02560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24700.1	4.3e-20	43.61	unknown protein; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34665	FAMILY NOT NAMED	coord: 1..130
None	No IPR available	PANTHER	PTHR34665:SF1	OS02G0595200 PROTEIN	coord: 1..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g02560.1	Cp4.1LG20g02560.1	mRNA