Cp4.1LG20g01120 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG20g01120
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like
Location	Cp4.1LG20: 609973 .. 614294 (+)
RNA-Seq Expression	Cp4.1LG20g01120
Synteny	Cp4.1LG20g01120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAAGTTTGGACGATTGGCGAAACGACGTCGTAAAAGGATGTATGGCTGAGACGAGGGATAATTTCCCTCCAGGAAAAATCGCGAGACAATCGTACAGCGAAGAGAGAATCCACGCGTCGGCAAATGAGCCACGCAGTCGAATCTCGTTTGCAATTTTCTGTGAACCTGCTGCACTAAATCACTCTTCATCCCTCAACAGTTCTTCGAGCAGGGGCAATGGAAGCAGCAATTTGCGGTCGAGTACCTATTTCACCCTACCATTTCTTCAATTCGACCAGGCCGGGTATTCAGATTTCTACGAATTTGTTCCTCTTAATTTTCTTCGCTATTCAATTTGTCCGTAGTTCTTTTCCGCTGTGGGTTCTTTGTCCTTAATCCTAAATTTGAGGAAAGGTTTTTGAGAAATTTAGGTTTGCTGTTGAACATTTGCATAATTCATGGATTTATGGAGACAGAAGCTTTTGGCTGCTTAATGGGAAGAATAAAAATTATTAACCGGGAAAATCTGACCATCTGCATGTAGAATGATAATTTTCCTGTTTGTATGAATTTTACTGTTGCATTATGGAGGAAAGCAACAAGTGAAACCAAATTAAAGTTCAGAGGTAGATCTGAATCTTTTTGTTTGTGTGTGTGAACGGTGCAGAAGTATAAAAAGTTCATAACTAAAAATCTGTATTTTCTTCTGGAGTTGGATTTGGAGTGGGCAAAACCTAACTAGAATTAGTGAGGTGGGTTACCAGCATAATGTAATGAGTGGAAGTTCCCCTGTTATTAGGGGAAAAAAAAGGCTAAACCCTAGCATCTAGTAAATATTTCAGGCTAACATTTCAACATTTCTGTCATGGTGAATTAATATCTCAAAATGTAGGGATCAACAAACTAGCAAGAATGCTCAATGACCTAGTGGAATATTTAGAATTTGATGATCAAAATGAACAGGAAAGGCTATAGTTTAGCTACCATAACAACAGTGTAACCGTCTACATCGCTTTCTTTTATTTTTATCCACATACTTGCAGAGAGTCCTGAGACAATTTATAAGTTACAGAATTTACTAGAACCTATTAGAATTGCTACTTAGCAAATGGTTTCCATTAGAAGCAAGAGTGTCACAACCTTACTTTGAAGAGAGTAGGTTGTGACCCTCATGTTGCGACAAGCAAAGCGGTGACCCTCAAGTGGTGCCCATCCGGCCATGCGAGGGCCTAGATGAGTGCCATAATGCGACCGAGGAAGATGGTGCATCATTTAACACACCACATATAGAGTGGGCATTTAAAAGAAGATGAGGCATAAACAAGATAAGGGCCATTGTTGAAGGGCCGGGTAGGGCCTCGTGCCTTAACCTCGAAAGCTGAGGTTCTGAATGGAATTTGAGCATGCGGTTCTGGAGTCAAGTCTGTCCATATGAAATATGAATGCTCATTAAATTTGATGTCAATCCTACACAGGACGGACGCTCCACCGTTTGACCGTTCGCCAAAATGATGTCTAATTCGATGGGGATTGGCAATGCCTCAAAATGTACCTTCGGGGTAGGCATAGTATCAACTCTCTACCACCCATAAGCTCTATGGTCTAAGCGAGCTACCCTGTGGCATATGCGTGCGTCACAGTGAGGGCGAGCGTTCTGAGACGAGTGTCTCGGACAACTTTCTTTGAAATGGGTCTTTTAAGGACAGTGCCGGGTGAATCAACCAAATTGGTTTCTCTATAAAAAAAAAAGTTCATGATACGAAATAAACGCTAGGATCTTTAGATACTCTTTATACCCTCTAAAAAAAACCTTTAAATTTTTTGTTTGAGATAAATATTAATGACGTTTATATTATTGGATAATCTTGGATGACAAACGGATGGTGCGTCAGTTTGGTCCTTTGCTAGGTCTCACGTTTCTGGTGGGTTTCGATTACAAAATTTTATTATTATTATTATTTTTTATAGTAAAGATTAGCTTGGTATTATCTTGTTTGATTGGAGGCCTTTCCTTTAGTTTGCCTTCGTCTTTTGTGGGCTCTCTTTTTTGTATGCCCGTGTATTCTTTTTCTTTTTCAATGTAAGTTTGGTGATTCATTAAAAAAAAATTTGATGGTGACTGTTAAACTTTACATGGTCCATAAACTGAGATTAGTCTAGTTTAGAGCCTGGGCTGAATTTAGTTAAGAACTTCTTGCTTATAACACATGGCCAAAAAGTGAACACTTAGGAACATATCTGTTAATAGATGAGCTCACATGAATCAGGCAGCTTTAAGTCGCAATTTTCCTAAGCATTGTACATTTTTCTACCTGCAAAGGTGTGGTGGCTGTTCATTTTATTTTATGTTGGAACTTACCTGACATCTTCATACAATATTACTCATTTATATTTTCCATGTTTGTCATAGGGGATAAATACTATTTTCATAAACCATGTAGAAACCGGAGCATCTTAATGTTATCGGTTGCTGCGCTTGGAAGAGGTGGGGGGTTGTTGGACAAGCCAACAATAGAGAAGACAACACCTGGCCGTGAATCCGAGTTTGATGTTAGGTACAAAACAGTTTTCATTTGAATGTATGCATTGGAGAAGGCTTAGCTTCGAACATAATTTTCATCTTCAGGAAATCAAGGAAAATTGCTCCGCCTTATCAAGTGTTGCTACATAACGACAATTACAACAAGCGGGAATACGTCGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACCGTTGACAATGCAGTCAACATAATGCAGGAGGCACATCACAATGGTATGTCAGTGGTAATTGTCTGCGCTCAAGTGGACGCAGAAGATCACTGCATGCAGCTACGAGGCAATGGTCTTCAAAGTTCAATCGAGCCTGCAAGTGATGGTTGTTGAATAGGAAACATAGACCATGTAATGTACTCTTTTCACCCCTTAGTTATCAGCCATATTAAAATTGCATGCCCTCAACTGCTACAATTTGCAAGCTGCACCTATGTACATATATAGAGATACTTCATAAACAAATAAACTTCAATTTATGAATACCATGTTCACAATAGTTATGTTATGAGTTGTACACACAAACACATCTTCCTTTTCAGTTGATTTGTTTTTACTTGACTTCCATGTGGTTTGTTGTGCATTCTGATCTTTCTTGTATCATTCTAGTAATAACCCAATCTCATCGTTAGCAGATATTGTTTTCTTTGAGTTTTTCCTTTCGAGCCTCCCTTTAAGGTATTTAGAATGTGTCTGCTAGGGAGAGTTTTCACACCCTTAATCAGAATGTTTTGTTCCCCTTCACAAGGACGTATTTTGAGTAAATATGTGCAATATTCTTCCCTTGGTCCCATCCCCATGCGTACATTGAGAAGAATTCTAAAATTGCTGTTCTCTCTGTTGCTTGCTTGGTATAAAACCCATCTGTACAAGAAATATTCTTTTTATAGATTGAGACGTCTAGAACTGAAACTCTATATTCATCACACAGTTGCCAGTTCCTGTCTTCCCAGTTATGGGAGAGAGCTCTGAACTGCTGGATTTTCCAGTTTCCAGTTCCAGTCCTTCTAGAGGGTAAAGAGGGTCAGTAATCACCTCTTTATGAAGAATTTATATATCCATCAATTTCCTATTCACTACTTTTGAAAGGTTAAAGAAGTCATAGGATTCTATTAACTAATCAAATCCACTCCTAGATATTGTCCTCTTTGAGTTTTTTCTTTTGAGTTTTTTCCCGAAATTTTTAAAATGCGTCTGTTAGGAAGAGGTTTCCTCTCACGCCGCAAGGGAGAACAAAGGGTTAAAAGGGTTGCTTCACTTCACCATTTTTCTCGACCATAGCAGTGCTTTCCATATTAGCTTCTTCATCTTGGAGCCATGAGAAAACTAGCTGCTATATTTCGAAGTCTTTTGAATACACCTGTGAATGTAATATTGCAGGACTGAAAAAGAGGAAAGTGGGGTGCACCAACTCTTGCATGAGAGACTCAACTTGGACTGCTCTTGAATTACTGCAGCAGCTGCAGGTAGGTCCAATATCCTACCTATACTGCTATTATTTCTTTCCTTATTTATTATAACATGACAAATTTACTTCGAAAAATGTTTAGGATAATCATGGATTTTTATATAATAGGAGTAGTAGGTGAAGTAAGTAAGGTACCAAAAACATTACCATTCTATTTATCATTCCTTTTAAAACTTAGCTTTCTTAAGTATGGTAGGTGAATATTATTAACTATCATCAACTGTATACAATCTTAAACTTATTACTTTGTATCAAGTTATTTATGAAGAGAAATTTACACTCTGAGGGTGAAATAGGAAAGTTGTTCCTTCCAACAA

mRNA sequence

GAAGAAGTTTGGACGATTGGCGAAACGACGTCGTAAAAGGATGTATGGCTGAGACGAGGGATAATTTCCCTCCAGGAAAAATCGCGAGACAATCGTACAGCGAAGAGAGAATCCACGCGTCGGCAAATGAGCCACGCAGTCGAATCTCGTTTGCAATTTTCTGTGAACCTGCTGCACTAAATCACTCTTCATCCCTCAACAGTTCTTCGAGCAGGGGCAATGGAAGCAGCAATTTGCGGTCGAGTACCTATTTCACCCTACCATTTCTTCAATTCGACCAGGCCGGAAACCGGAGCATCTTAATGTTATCGGTTGCTGCGCTTGGAAGAGGTGGGGGGTTGTTGGACAAGCCAACAATAGAGAAGACAACACCTGGCCGTGAATCCGAGTTTGATGTTAGGAAATCAAGGAAAATTGCTCCGCCTTATCAAGTGTTGCTACATAACGACAATTACAACAAGCGGGAATACGTCGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACCGTTGACAATGCAGTCAACATAATGCAGGAGGCACATCACAATGGTATGTCAGTGGTAATTGTCTGCGCTCAAGTGGACGCAGAAGATCACTGCATGCAGCTACGAGGCAATGGTCTTCAAAGTTCAATCGAGCCTGCAAGTGATGTTATCAGCCATATTAAAATTGCATGCCCTCAACTGCTACAATTTGCAAGCTGCACCTATATTGAGACGTCTAGAACTGAAACTCTATATTCATCACACAGTTGCCAGTTCCTGTCTTCCCAGTTATGGGAGAGAGCTCTGAACTGCTGGATTTTCCAGTTTCCAGTTCCAGTCCTTCTAGAGGGTAAAGAGGGACTGAAAAAGAGGAAAGTGGGGTGCACCAACTCTTGCATGAGAGACTCAACTTGGACTGCTCTTGAATTACTGCAGCAGCTGCAGGTAGGTCCAATATCCTACCTATACTGCTATTATTTCTTTCCTTATTTATTATAACATGACAAATTTACTTCGAAAAATGTTTAGGATAATCATGGATTTTTATATAATAGGAGTAGTAGGTGAAGTAAGTAAGGTACCAAAAACATTACCATTCTATTTATCATTCCTTTTAAAACTTAGCTTTCTTAAGTATGGTAGGTGAATATTATTAACTATCATCAACTGTATACAATCTTAAACTTATTACTTTGTATCAAGTTATTTATGAAGAGAAATTTACACTCTGAGGGTGAAATAGGAAAGTTGTTCCTTCCAACAA

Coding sequence (CDS)

ATGGCTGAGACGAGGGATAATTTCCCTCCAGGAAAAATCGCGAGACAATCGTACAGCGAAGAGAGAATCCACGCGTCGGCAAATGAGCCACGCAGTCGAATCTCGTTTGCAATTTTCTGTGAACCTGCTGCACTAAATCACTCTTCATCCCTCAACAGTTCTTCGAGCAGGGGCAATGGAAGCAGCAATTTGCGGTCGAGTACCTATTTCACCCTACCATTTCTTCAATTCGACCAGGCCGGAAACCGGAGCATCTTAATGTTATCGGTTGCTGCGCTTGGAAGAGGTGGGGGGTTGTTGGACAAGCCAACAATAGAGAAGACAACACCTGGCCGTGAATCCGAGTTTGATGTTAGGAAATCAAGGAAAATTGCTCCGCCTTATCAAGTGTTGCTACATAACGACAATTACAACAAGCGGGAATACGTCGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACCGTTGACAATGCAGTCAACATAATGCAGGAGGCACATCACAATGGTATGTCAGTGGTAATTGTCTGCGCTCAAGTGGACGCAGAAGATCACTGCATGCAGCTACGAGGCAATGGTCTTCAAAGTTCAATCGAGCCTGCAAGTGATGTTATCAGCCATATTAAAATTGCATGCCCTCAACTGCTACAATTTGCAAGCTGCACCTATATTGAGACGTCTAGAACTGAAACTCTATATTCATCACACAGTTGCCAGTTCCTGTCTTCCCAGTTATGGGAGAGAGCTCTGAACTGCTGGATTTTCCAGTTTCCAGTTCCAGTCCTTCTAGAGGGTAAAGAGGGACTGAAAAAGAGGAAAGTGGGGTGCACCAACTCTTGCATGAGAGACTCAACTTGGACTGCTCTTGAATTACTGCAGCAGCTGCAGGTAGGTCCAATATCCTACCTATACTGCTATTATTTCTTTCCTTATTTATTATAA

Protein sequence

MAETRDNFPPGKIARQSYSEERIHASANEPRSRISFAIFCEPAALNHSSSLNSSSSRGNGSSNLRSSTYFTLPFLQFDQAGNRSILMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPASDVISHIKIACPQLLQFASCTYIETSRTETLYSSHSCQFLSSQLWERALNCWIFQFPVPVLLEGKEGLKKRKVGCTNSCMRDSTWTALELLQQLQVGPISYLYCYYFFPYLL

Homology

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BLAST of Cp4.1LG20g01120 vs. ExPASy Swiss-Prot
Match: Q9SX29 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPLS1 PE=1 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.3e-51
Identity = 101/121 (83.47%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 82  NRSILML--SVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNK 141
           NRSILM   + AALG+GGG+LDKP IEKTTPGRESEFD+RKS+KIAPPY+V+LHNDN+NK
Sbjct: 34  NRSILMTLSTSAALGKGGGVLDKPIIEKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNK 93

Query: 142 REYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIE 201
           REYVVQVLMKVIPGMTVDNAVNIMQEAH NG++VVIVCAQ DAE HCMQLRGNGL SS+E
Sbjct: 94  REYVVQVLMKVIPGMTVDNAVNIMQEAHINGLAVVIVCAQADAEQHCMQLRGNGLLSSVE 153

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BLAST of Cp4.1LG20g01120 vs. ExPASy Swiss-Prot
Match: A0A2K3CNL6 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CLPS1 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.7e-22
Identity = 57/104 (54.81%), Postives = 76/104 (73.08%), Query Frame = 0


Query: 97  GGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTV 156
           GG++D PT   TT  ++    V +S+K  P Y+VLLHNDNYNKREYVV+VL+KV+  +TV
Sbjct: 61  GGVMDAPT---TT--QQPASGVERSQKRPPIYKVLLHNDNYNKREYVVKVLLKVVEQITV 120

Query: 157 DNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEP 201
           D+AV  MQEAH  G+++V+ C Q +AE +C  LR NGL S+IEP
Sbjct: 121 DDAVTCMQEAHETGVALVVACPQDNAERYCEGLRLNGLTSTIEP 159

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BLAST of Cp4.1LG20g01120 vs. ExPASy Swiss-Prot
Match: Q31QE7 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpS PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.3e-18
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 122 RKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVD 181
           RKIAP Y+VLLHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 182 AEDHCMQLRGNGLQSSIEP 201
           AE +C QL+ +GL SSIEP
Sbjct: 75  AEFYCEQLKSHGLSSSIEP 93

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BLAST of Cp4.1LG20g01120 vs. ExPASy Swiss-Prot
Match: Q5N3U1 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpS PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.2e-15
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 0


Query: 122 RKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVD 181
           RKIAP Y+VLLHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 182 AEDHCMQLRGNGLQ 196
           AE +C QL+ +GL+
Sbjct: 75  AEFYCEQLKSHGLE 88

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BLAST of Cp4.1LG20g01120 vs. ExPASy Swiss-Prot
Match: Q3AUR5 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9902) OX=316279 GN=clpS PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.2e-13
Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 0


Query: 109 TPGRESEFD--VRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEA 168
           +PG  +  D    + RK +P Y+VLLHND  N  EYV+  L +V+P ++  +A+ +M EA
Sbjct: 9   SPGGAAVLDKAPERVRKRSPRYKVLLHNDPVNSMEYVMTTLRQVVPQLSEQDAMAVMLEA 68

Query: 169 HHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEP 201
           H+ G+ +VIVC    AE +C  L+  GL SSIEP
Sbjct: 69  HNTGVGLVIVCDIEPAEFYCETLKSKGLTSSIEP 102

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BLAST of Cp4.1LG20g01120 vs. NCBI nr
Match: KAG7019954.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 308 bits (790), Expect = 5.38e-102
Identity = 166/232 (71.55%), Postives = 168/232 (72.41%), Query Frame = 0


Query: 82  NRSILMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKRE 141
           NRSILMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKRE
Sbjct: 65  NRSILMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKRE 124

Query: 142 YVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPA 201
           YVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPA
Sbjct: 125 YVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPA 184

Query: 202 SDVISHIKIACPQLLQFASCTYIETSRTETLYSSHSCQFLSSQLWERALNCWIFQFPVPV 261
           SD                                                          
Sbjct: 185 SD---------------------------------------------------------- 232

Query: 262 LLEGKEGLKKRKVGCTNSCMRDSTWTALELLQQLQVGPISYLYCYYFFPYLL 313
                 GL+KRKVGCTNSC+RDSTWTALELLQQLQVGPISYLYCYYFFPYLL
Sbjct: 245 ------GLRKRKVGCTNSCIRDSTWTALELLQQLQVGPISYLYCYYFFPYLL 232

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BLAST of Cp4.1LG20g01120 vs. NCBI nr
Match: XP_022136972.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 [Momordica charantia])

HSP 1 Score: 248 bits (632), Expect = 9.93e-79
Identity = 126/148 (85.14%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 57  RGNGSSNLRSSTYFTLPFLQFDQAGNRS-ILMLSVAALGRGGGLLDKPTIEKTTPGRESE 116
           RG GS NLRSST FT P LQ ++  NRS ++MLSVA LG+GGGLL+KPTIEKTTPGRESE
Sbjct: 36  RGYGSCNLRSSTSFTQPLLQSNETRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESE 95

Query: 117 FDVRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVI 176
           FDVRKSRK APPY+VLLHNDNYNKREYVVQVLMKVIPGMT+DNAVNIMQEAH+NGMSVVI
Sbjct: 96  FDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVI 155

Query: 177 VCAQVDAEDHCMQLRGNGLQSSIEPASD 203
           +CAQVDAEDHCMQLRGNGL SSIEPASD
Sbjct: 156 ICAQVDAEDHCMQLRGNGLLSSIEPASD 183

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BLAST of Cp4.1LG20g01120 vs. NCBI nr
Match: XP_023519501.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 244 bits (624), Expect = 6.31e-78
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 82  NRSILMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKRE 141
           NRSILMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKRE
Sbjct: 34  NRSILMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKRE 93

Query: 142 YVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPA 201
           YVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPA
Sbjct: 94  YVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPA 153

Query: 202 SD 203
           SD
Sbjct: 154 SD 155

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BLAST of Cp4.1LG20g01120 vs. NCBI nr
Match: KAG6584370.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 244 bits (624), Expect = 1.79e-77
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 82  NRSILMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKRE 141
           NRSILMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKRE
Sbjct: 65  NRSILMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKRE 124

Query: 142 YVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPA 201
           YVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPA
Sbjct: 125 YVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPA 184

Query: 202 SD 203
           SD
Sbjct: 185 SD 186

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BLAST of Cp4.1LG20g01120 vs. NCBI nr
Match: XP_022924035.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 243 bits (621), Expect = 5.09e-77
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 82  NRSILMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKRE 141
           NRSILMLSVAALGRGGGLLDKPTI+KTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKRE
Sbjct: 65  NRSILMLSVAALGRGGGLLDKPTIDKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKRE 124

Query: 142 YVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPA 201
           YVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPA
Sbjct: 125 YVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPA 184

Query: 202 SD 203
           SD
Sbjct: 185 SD 186

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BLAST of Cp4.1LG20g01120 vs. ExPASy TrEMBL
Match: A0A6J1C6X4 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008549 PE=3 SV=1)

HSP 1 Score: 248 bits (632), Expect = 4.81e-79
Identity = 126/148 (85.14%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 57  RGNGSSNLRSSTYFTLPFLQFDQAGNRS-ILMLSVAALGRGGGLLDKPTIEKTTPGRESE 116
           RG GS NLRSST FT P LQ ++  NRS ++MLSVA LG+GGGLL+KPTIEKTTPGRESE
Sbjct: 36  RGYGSCNLRSSTSFTQPLLQSNETRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESE 95

Query: 117 FDVRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVI 176
           FDVRKSRK APPY+VLLHNDNYNKREYVVQVLMKVIPGMT+DNAVNIMQEAH+NGMSVVI
Sbjct: 96  FDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVI 155

Query: 177 VCAQVDAEDHCMQLRGNGLQSSIEPASD 203
           +CAQVDAEDHCMQLRGNGL SSIEPASD
Sbjct: 156 ICAQVDAEDHCMQLRGNGLLSSIEPASD 183

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BLAST of Cp4.1LG20g01120 vs. ExPASy TrEMBL
Match: A0A6J1EDN1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111431582 PE=3 SV=1)

HSP 1 Score: 243 bits (621), Expect = 2.46e-77
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 82  NRSILMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKRE 141
           NRSILMLSVAALGRGGGLLDKPTI+KTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKRE
Sbjct: 65  NRSILMLSVAALGRGGGLLDKPTIDKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKRE 124

Query: 142 YVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPA 201
           YVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPA
Sbjct: 125 YVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPA 184

Query: 202 SD 203
           SD
Sbjct: 185 SD 186

[Close]

BLAST of Cp4.1LG20g01120 vs. ExPASy TrEMBL
Match: A0A6J1KH35 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111495194 PE=3 SV=1)

HSP 1 Score: 237 bits (604), Expect = 9.53e-75
Identity = 120/123 (97.56%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 82  NRSILM-LSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKR 141
           +RSILM LSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKR
Sbjct: 65  HRSILMMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKR 124

Query: 142 EYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEP 201
           EYVVQVLMKVIPGMT+DNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEP
Sbjct: 125 EYVVQVLMKVIPGMTLDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEP 184

Query: 202 ASD 203
           ASD
Sbjct: 185 ASD 187

[Close]

BLAST of Cp4.1LG20g01120 vs. ExPASy TrEMBL
Match: A0A6J1C511 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008549 PE=3 SV=1)

HSP 1 Score: 225 bits (573), Expect = 1.67e-70
Identity = 112/126 (88.89%), Postives = 120/126 (95.24%), Query Frame = 0


Query: 79  QAGNRS-ILMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNY 138
           Q  NRS ++MLSVA LG+GGGLL+KPTIEKTTPGRESEFDVRKSRK APPY+VLLHNDNY
Sbjct: 31  QCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNY 90

Query: 139 NKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSS 198
           NKREYVVQVLMKVIPGMT+DNAVNIMQEAH+NGMSVVI+CAQVDAEDHCMQLRGNGL SS
Sbjct: 91  NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSS 150

Query: 199 IEPASD 203
           IEPASD
Sbjct: 151 IEPASD 156

[Close]

BLAST of Cp4.1LG20g01120 vs. ExPASy TrEMBL
Match: A0A6J1K0P0 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111490541 PE=4 SV=1)

HSP 1 Score: 223 bits (567), Expect = 1.35e-69
Identity = 112/126 (88.89%), Postives = 120/126 (95.24%), Query Frame = 0


Query: 79  QAGNRSIL-MLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNY 138
           Q  NRSIL MLSVA LG+GGGLL+KPT EKTTPGRESEF+VRKSRKIAPPY+VLLHNDN+
Sbjct: 31  QCRNRSILTMLSVAELGKGGGLLEKPTTEKTTPGRESEFNVRKSRKIAPPYRVLLHNDNH 90

Query: 139 NKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSS 198
           NKREYVVQVLMKVIPGMTVDNAVNIMQEAH+NGM+VVI+CAQVDAEDHCMQLRGNGL SS
Sbjct: 91  NKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSS 150

Query: 199 IEPASD 203
           IEPASD
Sbjct: 151 IEPASD 156

[Close]

BLAST of Cp4.1LG20g01120 vs. TAIR 10
Match: AT1G68660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 204.9 bits (520), Expect = 9.4e-53
Identity = 101/121 (83.47%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 82  NRSILML--SVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNK 141
           NRSILM   + AALG+GGG+LDKP IEKTTPGRESEFD+RKS+KIAPPY+V+LHNDN+NK
Sbjct: 34  NRSILMTLSTSAALGKGGGVLDKPIIEKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNK 93

Query: 142 REYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIE 201
           REYVVQVLMKVIPGMTVDNAVNIMQEAH NG++VVIVCAQ DAE HCMQLRGNGL SS+E
Sbjct: 94  REYVVQVLMKVIPGMTVDNAVNIMQEAHINGLAVVIVCAQADAEQHCMQLRGNGLLSSVE 153

[Close]

BLAST of Cp4.1LG20g01120 vs. TAIR 10
Match: AT1G68660.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 136.7 bits (343), Expect = 3.1e-32
Identity = 74/121 (61.16%), Postives = 83/121 (68.60%), Query Frame = 0


Query: 82  NRSILML--SVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNK 141
           NRSILM   + AALG+GGG+LDKP IEKTTPGRESEFD+RKS+KIAPPY+V+LHNDN+NK
Sbjct: 34  NRSILMTLSTSAALGKGGGVLDKPIIEKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNK 93

Query: 142 REYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIE 201
           REYVVQVLMK                               DAE HCMQLRGNGL SS+E
Sbjct: 94  REYVVQVLMK------------------------------ADAEQHCMQLRGNGLLSSVE 124

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g01120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX29	1.3e-51	83.47	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis t...	[more]
A0A2K3CNL6	1.7e-22	54.81	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas...	[more]
Q31QE7	3.3e-18	58.23	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (stra...	[more]
Q5N3U1	1.2e-15	55.41	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATC...	[more]
Q3AUR5	3.2e-13	43.62	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9...	[more]

BLAST of Cp4.1LG20g01120 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019954.1	5.38e-102	71.55	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucurbita argyr...	[more]
XP_022136972.1	9.93e-79	85.14	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 ...	[more]
XP_023519501.1	6.31e-78	100.00	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita ...	[more]
KAG6584370.1	1.79e-77	100.00	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic, partial [Cucurb...	[more]
XP_022924035.1	5.09e-77	99.18	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita ...	[more]

BLAST of Cp4.1LG20g01120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C6X4	4.81e-79	85.14	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 ...	[more]
A0A6J1EDN1	2.46e-77	99.18	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbit...	[more]
A0A6J1KH35	9.53e-75	97.56	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbit...	[more]
A0A6J1C511	1.67e-70	88.89	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]
A0A6J1K0P0	1.35e-69	88.89	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbit...	[more]

BLAST of Cp4.1LG20g01120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68660.1	9.4e-53	83.47	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT1G68660.2	3.1e-32	61.16	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 123..200 e-value: 1.8E-20 score: 74.6
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 122..200
IPR003769	Adaptor protein ClpS, core	PFAM	PF02617	ClpS	coord: 125..191 e-value: 3.8E-18 score: 65.1
None	No IPR available	PANTHER	PTHR33473:SF14	ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS	coord: 75..203
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	PANTHER	PTHR33473	ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC	coord: 75..203
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	HAMAP	MF_00302	ClpS	coord: 108..202 score: 14.987559

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g01120.1	Cp4.1LG20g01120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030163	protein catabolic process
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008233	peptidase activity