Cp4.1LG19g09570 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG19g09570
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG19: 5954486 .. 5954752 (-)
RNA-Seq ExpressionCp4.1LG19g09570
SyntenyCp4.1LG19g09570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGATATTGCCATTCTGGTCGCAGAGGAATACGAGAGGAGGATGAAGAATCCAAGGCAAGAACAGAAGGGGGCAGCAGAGCTTCAAGATTTGGTTTCTGGGGTTTCCATCTCTGCAACTGCAACTGCAACTGCGAGTAGGGTGAAGAAGATGATGGAATTGGAATTGGAATTGGAATTGGCCCAACAAAATGAGTTCAAATGGGTTTTTGAACCCAAATCCCAAATCGGGCGAGCCGCATCCACTGGATTCTTCTCCGCCTGA

mRNA sequence

ATGGCGGATATTGCCATTCTGGTCGCAGAGGAATACGAGAGGAGGATGAAGAATCCAAGGCAAGAACAGAAGGGGGCAGCAGAGCTTCAAGATTTGGTTTCTGGGGTTTCCATCTCTGCAACTGCAACTGCAACTGCGAGTAGGGTGAAGAAGATGATGGAATTGGAATTGGAATTGGAATTGGCCCAACAAAATGAGTTCAAATGGGTTTTTGAACCCAAATCCCAAATCGGGCGAGCCGCATCCACTGGATTCTTCTCCGCCTGA

Coding sequence (CDS)

ATGGCGGATATTGCCATTCTGGTCGCAGAGGAATACGAGAGGAGGATGAAGAATCCAAGGCAAGAACAGAAGGGGGCAGCAGAGCTTCAAGATTTGGTTTCTGGGGTTTCCATCTCTGCAACTGCAACTGCAACTGCGAGTAGGGTGAAGAAGATGATGGAATTGGAATTGGAATTGGAATTGGCCCAACAAAATGAGTTCAAATGGGTTTTTGAACCCAAATCCCAAATCGGGCGAGCCGCATCCACTGGATTCTTCTCCGCCTGA

Protein sequence

MADIAILVAEEYERRMKNPRQEQKGAAELQDLVSGVSISATATATASRVKKMMELELELELAQQNEFKWVFEPKSQIGRAASTGFFSA
Homology
BLAST of Cp4.1LG19g09570 vs. NCBI nr
Match: XP_023517526.1 (uncharacterized protein LOC111781261 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166 bits (419), Expect = 2.29e-51
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 1  MADIAILVAEEYERRMKNPRQEQKGAAELQDLVSGVSISATATATASRVKKMMELELELE 60
          MADIAILVAEEYERRMKNPRQEQKGAAELQDLVSGVSISATATATASRVKKMMELELELE
Sbjct: 1  MADIAILVAEEYERRMKNPRQEQKGAAELQDLVSGVSISATATATASRVKKMMELELELE 60

Query: 61 LAQQNEFKWVFEPKSQIGRAASTGFFSA 88
          LAQQNEFKWVFEPKSQIGRAASTGFFSA
Sbjct: 61 LAQQNEFKWVFEPKSQIGRAASTGFFSA 88

BLAST of Cp4.1LG19g09570 vs. NCBI nr
Match: XP_022962826.1 (uncharacterized protein LOC111463202 [Cucurbita moschata])

HSP 1 Score: 139 bits (351), Expect = 4.54e-41
Identity = 79/88 (89.77%), Postives = 80/88 (90.91%), Query Frame = 0

Query: 1  MADIAILVAEEYERRMKNPRQEQKGAAELQDLVSGVSISATATATASRVKKMMELELELE 60
          MADIAILVAEEYERRMKNPRQEQK AAE+QDLVSGVSISATA    SRVKKMMELELEL 
Sbjct: 1  MADIAILVAEEYERRMKNPRQEQKAAAEVQDLVSGVSISATA----SRVKKMMELELEL- 60

Query: 61 LAQQNEFKWVFEPKSQIGRAASTGFFSA 88
           AQ NEFKWVFEPKSQIGRAASTGFFSA
Sbjct: 61 -AQPNEFKWVFEPKSQIGRAASTGFFSA 82

BLAST of Cp4.1LG19g09570 vs. NCBI nr
Match: XP_023003555.1 (uncharacterized protein LOC111497122 [Cucurbita maxima])

HSP 1 Score: 138 bits (347), Expect = 1.85e-40
Identity = 77/88 (87.50%), Postives = 81/88 (92.05%), Query Frame = 0

Query: 1  MADIAILVAEEYERRMKNPRQEQKGAAELQDLVSGVSISATATATASRVKKMMELELELE 60
          MADIAILVAEEYERRMKNPRQE+K AAE+QDLVSGVSISATA    SRVKKMMELELEL 
Sbjct: 1  MADIAILVAEEYERRMKNPRQEEKAAAEVQDLVSGVSISATA----SRVKKMMELELEL- 60

Query: 61 LAQQNEFKWVFEPKSQIGRAASTGFFSA 88
           A++NEFKWVFEPKSQIGRAASTGFFSA
Sbjct: 61 -AERNEFKWVFEPKSQIGRAASTGFFSA 82

BLAST of Cp4.1LG19g09570 vs. NCBI nr
Match: KAG6594853.1 (hypothetical protein SDJN03_11406, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137 bits (345), Expect = 3.74e-40
Identity = 78/88 (88.64%), Postives = 79/88 (89.77%), Query Frame = 0

Query: 1  MADIAILVAEEYERRMKNPRQEQKGAAELQDLVSGVSISATATATASRVKKMMELELELE 60
          MADIAILVAEEYERR KNPRQEQK AAE+QDLVSGVSISATA    SRVKKMMELELEL 
Sbjct: 1  MADIAILVAEEYERRTKNPRQEQKAAAEVQDLVSGVSISATA----SRVKKMMELELEL- 60

Query: 61 LAQQNEFKWVFEPKSQIGRAASTGFFSA 88
           AQ NEFKWVFEPKSQIGRAASTGFFSA
Sbjct: 61 -AQPNEFKWVFEPKSQIGRAASTGFFSA 82

BLAST of Cp4.1LG19g09570 vs. NCBI nr
Match: KAG7026817.1 (hypothetical protein SDJN02_10824, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135 bits (339), Expect = 3.07e-39
Identity = 77/88 (87.50%), Postives = 78/88 (88.64%), Query Frame = 0

Query: 1  MADIAILVAEEYERRMKNPRQEQKGAAELQDLVSGVSISATATATASRVKKMMELELELE 60
          MADIAILVAEEYERR KNPRQEQK AAE+QDLVSGV ISATA    SRVKKMMELELEL 
Sbjct: 1  MADIAILVAEEYERRTKNPRQEQKAAAEVQDLVSGVFISATA----SRVKKMMELELEL- 60

Query: 61 LAQQNEFKWVFEPKSQIGRAASTGFFSA 88
           AQ NEFKWVFEPKSQIGRAASTGFFSA
Sbjct: 61 -AQPNEFKWVFEPKSQIGRAASTGFFSA 82

BLAST of Cp4.1LG19g09570 vs. ExPASy TrEMBL
Match: A0A6J1HEA8 (uncharacterized protein LOC111463202 OS=Cucurbita moschata OX=3662 GN=LOC111463202 PE=4 SV=1)

HSP 1 Score: 139 bits (351), Expect = 2.20e-41
Identity = 79/88 (89.77%), Postives = 80/88 (90.91%), Query Frame = 0

Query: 1  MADIAILVAEEYERRMKNPRQEQKGAAELQDLVSGVSISATATATASRVKKMMELELELE 60
          MADIAILVAEEYERRMKNPRQEQK AAE+QDLVSGVSISATA    SRVKKMMELELEL 
Sbjct: 1  MADIAILVAEEYERRMKNPRQEQKAAAEVQDLVSGVSISATA----SRVKKMMELELEL- 60

Query: 61 LAQQNEFKWVFEPKSQIGRAASTGFFSA 88
           AQ NEFKWVFEPKSQIGRAASTGFFSA
Sbjct: 61 -AQPNEFKWVFEPKSQIGRAASTGFFSA 82

BLAST of Cp4.1LG19g09570 vs. ExPASy TrEMBL
Match: A0A6J1KS29 (uncharacterized protein LOC111497122 OS=Cucurbita maxima OX=3661 GN=LOC111497122 PE=4 SV=1)

HSP 1 Score: 138 bits (347), Expect = 8.96e-41
Identity = 77/88 (87.50%), Postives = 81/88 (92.05%), Query Frame = 0

Query: 1  MADIAILVAEEYERRMKNPRQEQKGAAELQDLVSGVSISATATATASRVKKMMELELELE 60
          MADIAILVAEEYERRMKNPRQE+K AAE+QDLVSGVSISATA    SRVKKMMELELEL 
Sbjct: 1  MADIAILVAEEYERRMKNPRQEEKAAAEVQDLVSGVSISATA----SRVKKMMELELEL- 60

Query: 61 LAQQNEFKWVFEPKSQIGRAASTGFFSA 88
           A++NEFKWVFEPKSQIGRAASTGFFSA
Sbjct: 61 -AERNEFKWVFEPKSQIGRAASTGFFSA 82

BLAST of Cp4.1LG19g09570 vs. ExPASy TrEMBL
Match: A0A0A0KK75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501230 PE=4 SV=1)

HSP 1 Score: 100 bits (248), Expect = 1.35e-25
Identity = 63/91 (69.23%), Postives = 72/91 (79.12%), Query Frame = 0

Query: 1  MADIAILVAEEYERRMKNPRQEQKGAA-ELQDL-VSGVSISATATATASRVKKMMELELE 60
          MADIAILVAEEYERR KNPR+ Q+    ELQ+L  SGVSISATAT+   R+KKMME+  +
Sbjct: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSI--RMKKMMEMAKK 60

Query: 61 LEL-AQQNEFKWVFEPKSQIGRAASTGFFSA 88
              A+ +EF WVFEPKSQIGRAASTGFFSA
Sbjct: 61 HNYSAEMSEFNWVFEPKSQIGRAASTGFFSA 89

BLAST of Cp4.1LG19g09570 vs. ExPASy TrEMBL
Match: A0A5A7T3Y6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002530 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.08e-24
Identity = 61/90 (67.78%), Postives = 70/90 (77.78%), Query Frame = 0

Query: 1  MADIAILVAEEYERRMKNPRQEQKGAA-ELQDLVSGVSISATATATASRVKKMMELELEL 60
          MADIAILVAEEYERR K+PR++Q+    ELQDL SGVSISATAT+    +KKMME+    
Sbjct: 1  MADIAILVAEEYERRTKHPRRDQEMVRQELQDLGSGVSISATATSIT--MKKMMEMAKRN 60

Query: 61 EL-AQQNEFKWVFEPKSQIGRAASTGFFSA 88
             A+ +EF  VFEPKSQIGRAASTGFFSA
Sbjct: 61 NYSAEISEFNRVFEPKSQIGRAASTGFFSA 88

BLAST of Cp4.1LG19g09570 vs. ExPASy TrEMBL
Match: A0A1S4DTC5 (uncharacterized protein LOC103485003 OS=Cucumis melo OX=3656 GN=LOC103485003 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.08e-24
Identity = 61/90 (67.78%), Postives = 70/90 (77.78%), Query Frame = 0

Query: 1  MADIAILVAEEYERRMKNPRQEQKGAA-ELQDLVSGVSISATATATASRVKKMMELELEL 60
          MADIAILVAEEYERR K+PR++Q+    ELQDL SGVSISATAT+    +KKMME+    
Sbjct: 1  MADIAILVAEEYERRTKHPRRDQEMVRQELQDLGSGVSISATATSIT--MKKMMEMAKRN 60

Query: 61 EL-AQQNEFKWVFEPKSQIGRAASTGFFSA 88
             A+ +EF  VFEPKSQIGRAASTGFFSA
Sbjct: 61 NYSAEISEFNRVFEPKSQIGRAASTGFFSA 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023517526.12.29e-51100.00uncharacterized protein LOC111781261 [Cucurbita pepo subsp. pepo][more]
XP_022962826.14.54e-4189.77uncharacterized protein LOC111463202 [Cucurbita moschata][more]
XP_023003555.11.85e-4087.50uncharacterized protein LOC111497122 [Cucurbita maxima][more]
KAG6594853.13.74e-4088.64hypothetical protein SDJN03_11406, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7026817.13.07e-3987.50hypothetical protein SDJN02_10824, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
A0A6J1HEA82.20e-4189.77uncharacterized protein LOC111463202 OS=Cucurbita moschata OX=3662 GN=LOC1114632... [more]
A0A6J1KS298.96e-4187.50uncharacterized protein LOC111497122 OS=Cucurbita maxima OX=3661 GN=LOC111497122... [more]
A0A0A0KK751.35e-2569.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501230 PE=4 SV=1[more]
A0A5A7T3Y63.08e-2467.78Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S4DTC53.08e-2467.78uncharacterized protein LOC103485003 OS=Cucumis melo OX=3656 GN=LOC103485003 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36067EXPRESSED PROTEINcoord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g09570.1Cp4.1LG19g09570.1mRNA