Cp4.1LG19g09000 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG19g09000
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein SHI RELATED SEQUENCE 1-like
Location	Cp4.1LG19: 6224497 .. 6225925 (-)
RNA-Seq Expression	Cp4.1LG19g09000
Synteny	Cp4.1LG19g09000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGACAAGAAGCGGGGTTTCCGCAAAAGGAAGGAAGGGGGGCAAAAGCTGGTGGGTTGACATGTGGGCGACGGAGAGCCGTCGGATCAAGATGATGAGATGTTGAGGAACAAGAAGAAAAACAAGAAGAAGAAGAAGAACAAAATTGGTTGTGTTGTTTGGAGGAGAGAGTGGAAAAAGGGTCATAACTGCAGCAGATTCAGAAACAGAGATTAAGTGGGGCGGAGAAAGGCATGGCGGCGCTGCAGACAGAGCTGTTATTCTCCGCCATAAATGCCACTATCAGACACAAAGGAGACCAGAAATTCAAAGCGTGATTAACTCTCAGCCACCACCAGCTACCAATTTCTTTCTTCTTTCAATAGATCACCCAGGGGTTGGACCCTCTGATTATGGATATTAGGTCACCTTCAGGTTCTTCTGGCTCACACCAACAATGTCAATGTCTGGTTTCTTCACTCTAGGCTCCACCGACCAAGAACACCAACAACCCGACACGAATCGCCCAAACCAAACACTCCCCCCGGACACCTTGTTTTGGTACAAGCCCGGAAGCGTCGAGCTATGGCAGCCCCAACAGCACCAACAGCACCAACAGCACCAACAACAATCGCTATTTCAAACGCGGTCTCACAACAACAACAACAACAATAATCTGTACTCGGATGAATCCTCGTCCAGATCCGGTAATTTAATGATGATTAGCTCCGGATCAGGCGGAGGGGGAATCAGCTGCCAAGACTGCGGCAACCAAGCCAAAAAAGACTGTACCCATATGCGATGCAGGAGTTGCTGCAACACCCGAGGCTTCCCTTGCCAGACCCATGTCAAAAGCACTTGGGTCCCTGCCGCCAAGCGCCGTCAGCGCCAACAAAAACTCGCCGCCTTACAAACCCATCCCAAACGCCACACAGATTATAACATCCCCACCACCAACACTTCTGGTACAATTACTTCTTTTTTCCTCACCAATTTATACATATTATAATTTTTTAATTTTAATTTAGGGTTAGAAATTGGGAATTTCCCGGCGGAATTGAACTCCCCGGCTGTGTTCCGTTGCGTTCGTCTCAGCTCCACCGACGACACCGACGATCAATACGCATATCAAACGGCGGTGAACATCGGAGGACATGTTTTCAAGGGAATTCTATACGATCAAGGACCCGAAAATAATTATGTTCCTGGTGAGACCTCGTCCGGCGGCGGTGGTGGGTTGCAACCACTGAATTTCATCGCCGGTGCCGCCGATGCCAACGCTGCTTCCTCCGCCGCATTACCCTTACTCGATCCCTCTTCGTTATACTCAGCGCCGCTCAATAGCTTCATGGCGGGTACGCAATTCTTCCTACCACCAAGATCCTAAAAAAAAAATTAAAAAATTAAAAAAAAAATTATCATATTTTCATTTTCACTTTTTTTTTTTTTTG

mRNA sequence

GAGACAAGAAGCGGGGTTTCCGCAAAAGGAAGGAAGGGGGGCAAAAGCTGGTGGGTTGACATGTGGGCGACGGAGAGCCGTCGGATCAAGATGATGAGATGTTGAGGAACAAGAAGAAAAACAAGAAGAAGAAGAAGAACAAAATTGGTTGTGTTGTTTGGAGGAGAGAGTGGAAAAAGGGTCATAACTGCAGCAGATTCAGAAACAGAGATTAAGTGGGGCGGAGAAAGGCATGGCGGCGCTGCAGACAGAGCTGTTATTCTCCGCCATAAATGCCACTATCAGACACAAAGGAGACCAGAAATTCAAAGCGTGATTAACTCTCAGCCACCACCAGCTACCAATTTCTTTCTTCTTTCAATAGATCACCCAGGGGTTGGACCCTCTGATTATGGATATTAGGTCACCTTCAGGTTCTTCTGGCTCACACCAACAATGTCAATGTCTGGTTTCTTCACTCTAGGCTCCACCGACCAAGAACACCAACAACCCGACACGAATCGCCCAAACCAAACACTCCCCCCGGACACCTTGTTTTGGTACAAGCCCGGAAGCGTCGAGCTATGGCAGCCCCAACAGCACCAACAGCACCAACAGCACCAACAACAATCGCTATTTCAAACGCGGTCTCACAACAACAACAACAACAATAATCTGTACTCGGATGAATCCTCGTCCAGATCCGGTAATTTAATGATGATTAGCTCCGGATCAGGCGGAGGGGGAATCAGCTGCCAAGACTGCGGCAACCAAGCCAAAAAAGACTGTACCCATATGCGATGCAGGAGTTGCTGCAACACCCGAGGCTTCCCTTGCCAGACCCATGTCAAAAGCACTTGGGTCCCTGCCGCCAAGCGCCGTCAGCGCCAACAAAAACTCGCCGCCTTACAAACCCATCCCAAACGCCACACAGATTATAACATCCCCACCACCAACACTTCTGGGTTAGAAATTGGGAATTTCCCGGCGGAATTGAACTCCCCGGCTGTGTTCCGTTGCGTTCGTCTCAGCTCCACCGACGACACCGACGATCAATACGCATATCAAACGGCGGTGAACATCGGAGGACATGTTTTCAAGGGAATTCTATACGATCAAGGACCCGAAAATAATTATGTTCCTGGTGAGACCTCGTCCGGCGGCGGTGGTGGGTTGCAACCACTGAATTTCATCGCCGGTGCCGCCGATGCCAACGCTGCTTCCTCCGCCGCATTACCCTTACTCGATCCCTCTTCGTTATACTCAGCGCCGCTCAATAGCTTCATGGCGGGTACGCAATTCTTCCTACCACCAAGATCCTAAAAAAAAAATTAAAAAATTAAAAAAAAAATTATCATATTTTCATTTTCACTTTTTTTTTTTTTTG

Coding sequence (CDS)

ATGTCAATGTCTGGTTTCTTCACTCTAGGCTCCACCGACCAAGAACACCAACAACCCGACACGAATCGCCCAAACCAAACACTCCCCCCGGACACCTTGTTTTGGTACAAGCCCGGAAGCGTCGAGCTATGGCAGCCCCAACAGCACCAACAGCACCAACAGCACCAACAACAATCGCTATTTCAAACGCGGTCTCACAACAACAACAACAACAATAATCTGTACTCGGATGAATCCTCGTCCAGATCCGGTAATTTAATGATGATTAGCTCCGGATCAGGCGGAGGGGGAATCAGCTGCCAAGACTGCGGCAACCAAGCCAAAAAAGACTGTACCCATATGCGATGCAGGAGTTGCTGCAACACCCGAGGCTTCCCTTGCCAGACCCATGTCAAAAGCACTTGGGTCCCTGCCGCCAAGCGCCGTCAGCGCCAACAAAAACTCGCCGCCTTACAAACCCATCCCAAACGCCACACAGATTATAACATCCCCACCACCAACACTTCTGGGTTAGAAATTGGGAATTTCCCGGCGGAATTGAACTCCCCGGCTGTGTTCCGTTGCGTTCGTCTCAGCTCCACCGACGACACCGACGATCAATACGCATATCAAACGGCGGTGAACATCGGAGGACATGTTTTCAAGGGAATTCTATACGATCAAGGACCCGAAAATAATTATGTTCCTGGTGAGACCTCGTCCGGCGGCGGTGGTGGGTTGCAACCACTGAATTTCATCGCCGGTGCCGCCGATGCCAACGCTGCTTCCTCCGCCGCATTACCCTTACTCGATCCCTCTTCGTTATACTCAGCGCCGCTCAATAGCTTCATGGCGGGTACGCAATTCTTCCTACCACCAAGATCCTAA

Protein sequence

MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQHQQQSLFQTRSHNNNNNNNLYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAELNSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYVPGETSSGGGGGLQPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS

Homology

[Close]

BLAST of Cp4.1LG19g09000 vs. ExPASy Swiss-Prot
Match: Q9SD40 (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2)

HSP 1 Score: 249.2 bits (635), Expect = 5.6e-65
Identity = 167/375 (44.53%), Postives = 215/375 (57.33%), Query Frame = 0


Query: 3   MSGFFTL---------GSTDQEHQQPDTNRPNQTLPP--DTLFWYKP------------- 62
           M+GFF+L         G  +QE  + +TN P    PP  +   WY+              
Sbjct: 1   MAGFFSLDGGGGGGGGGGNNQEDHRSNTNPP----PPVSEAWLWYRNPNVNANANTNVNA 60

Query: 63  ----------GSVELWQPQQHQ----QHQQHQQQ-SLFQT--------RSHNNNNNNNLY 122
                     G++ELWQ    Q    QHQQHQQ+  L+ +         +HN  + +   
Sbjct: 61  NAPSSSNAALGTLELWQNHNQQEIMFQHQQHQQRLDLYSSAAGLGVGPSNHNQFDISGET 120

Query: 123 SDESSSRSGNLMMI---SSGSGGGGISCQDCGNQAKKDCTHMRCRSCCNTRGFPCQTHVK 182
           S   + R+  +MMI    SG G GG+SCQDCGNQAKKDC+HMRCR+CC +RGF C THV+
Sbjct: 121 STAGAGRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRGFECSTHVR 180

Query: 183 STWVPAAKRRQRQQKLAALQTH---------PKRHTDYNIPTTNT----------SGLEI 242
           STWVPAAKRR+RQQ+LA +Q           PKRH + N+P T++          SGLE+
Sbjct: 181 STWVPAAKRRERQQQLATVQPQTQLPRGESVPKRHRE-NLPATSSSLVCTRIPSHSGLEV 240

Query: 243 GNFPAELNSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPEN------NY 289
           GNFPAE++S AVFRCVR+SS +D ++++AYQTAV+IGGH+FKGILYD GP +      N 
Sbjct: 241 GNFPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLGPGSSGGGGYNV 300

[Close]

BLAST of Cp4.1LG19g09000 vs. ExPASy Swiss-Prot
Match: Q9XGX0 (Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 7.1e-60
Identity = 151/340 (44.41%), Postives = 198/340 (58.24%), Query Frame = 0


Query: 3   MSGFFTL----GSTDQEHQQPDTNRPNQTLPPDTLFWYKP--------------GSVELW 62
           M+GFF+L    G    ++ + +TN P+ +     L+   P              G++ELW
Sbjct: 1   MAGFFSLGHGGGGNTPDNHRTNTNNPSSSGTESWLWCRNPNSNADGGEAGPSYKGTLELW 60

Query: 63  QPQQH------QQHQQHQQQSLFQTRSHNNNNNNNLYSDESSSRSGNLMMISSGSGGGGI 122
           Q   +      QQ QQ Q+  L+ + +      +N    E+S   G LMM+ SGSG GG 
Sbjct: 61  QHPNNQEIIFQQQQQQQQRLDLYTSAAGLGVGPSNRSLIETS--GGALMMMRSGSGSGGP 120

Query: 123 SCQDCGNQAKKDCTHMRCRSCCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQ------ 182
           SCQDCGNQ+KKDC+HMRCR+CC +RG  C THVKSTWVPAAKRR+RQQ+L+  Q      
Sbjct: 121 SCQDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLSTGQQPQQLG 180

Query: 183 -THPKRHTD-----------YNIPTTNTSGLEIGNFPAELNSPAVFRCVRLSSTDDTDDQ 242
            + PKR  +             IP+ NTSGLE+GNFP E++S AVFRCVR+SS DD +++
Sbjct: 181 GSVPKRQRERIPARSTSMAYTRIPSNNTSGLEVGNFPPEVSSSAVFRCVRVSSVDDEEEE 240

Query: 243 YAYQTAVNIGGHVFKGILYDQGPENNYVPGETSSGGGGGLQPLNFIAGAADANAAS---- 289
           YAY+TAV+IGGHVFKG+LYDQGP          S  GGG QPLN I     A+++S    
Sbjct: 241 YAYKTAVSIGGHVFKGVLYDQGPAER-------SSSGGGSQPLNLITAGPSASSSSPNVS 300

[Close]

BLAST of Cp4.1LG19g09000 vs. ExPASy Swiss-Prot
Match: K4B6C9 (Protein EXPRESSION OF TERPENOIDS 1 OS=Solanum lycopersicum OX=4081 GN=EOT1 PE=2 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 6.6e-58
Identity = 159/356 (44.66%), Postives = 208/356 (58.43%), Query Frame = 0


Query: 3   MSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYK--------------PGS---VELWQ 62
           M+ FF+LG  +QE Q  + +     +P ++  W+               P +    ELWQ
Sbjct: 1   MANFFSLGG-NQEQQHQEISSSQALVPTESNNWFLYRNEHHHHHHNQEIPNTYKGFELWQ 60

Query: 63  ----PQ-QHQQHQQHQQ--------QSLFQTR-----SHNNNNNNNLYSDESSSRSGNLM 122
               PQ QHQ HQQ QQ        Q L+ T        + +  +    D  +SRSG +M
Sbjct: 61  SGNTPQHQHQHHQQQQQFRHPIYPLQDLYSTDVGLGVGPSRSGFDISAGDHEASRSGFVM 120

Query: 123 MISSGSGGGGISCQDCGNQAKKDCTHMRCRSCCNTRGFPCQTHVKSTWVPAAKRRQRQQK 182
           M    SGGGGISCQDCGNQAKKDC HMRCR+CC +RGF CQTHVKSTWVPAAKRR+RQQ+
Sbjct: 121 M---RSGGGGISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQ 180

Query: 183 LAALQTHPKRHTDYN---------------------IPTTNTSGLEIGNFPAELNSPAVF 242
           LAALQ   + H + N                     +P +NT+GLE+G FP+++ + AVF
Sbjct: 181 LAALQQQQQGHNNNNNNHKNKRQREDPSASSLVSTRLP-SNTNGLEVGKFPSKVRTSAVF 240

Query: 243 RCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNY-----VPGETSSGG-GGGL 289
           +C+++SS +D +DQ AYQ AV+IGGHVFKGILYDQG E+ Y       G+TSSGG  GG+
Sbjct: 241 QCIQMSSIEDDEDQLAYQAAVSIGGHVFKGILYDQGHESQYNNMVAAGGDTSSGGSAGGV 300

[Close]

BLAST of Cp4.1LG19g09000 vs. ExPASy Swiss-Prot
Match: Q9LQZ5 (Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 9.9e-54
Identity = 158/366 (43.17%), Postives = 191/366 (52.19%), Query Frame = 0


Query: 3   MSGFFTLGSTD-------QEHQQPDTNRPNQTLPPDTLFWYKP------GSVELWQPQ-- 62
           M+GFF LG  D       Q+H Q D +  +Q    + L+ YK          E+W PQ  
Sbjct: 1   MAGFFYLGGRDNNSNNNKQDHHQVDKDHHHQD-KSNYLYLYKDEIYNNNKGFEIWPPQYF 60

Query: 63  QHQQHQQHQQQ-------------SLFQTRSHNNNNNNNLYSDESSSRSGNLMMISSGSG 122
           Q Q+HQQ QQQ              +  + S +NNNNN        SRS    ++S    
Sbjct: 61  QQQEHQQQQQQQQHASAPANFYSFGMVPSGSSSNNNNNR-------SRSLYFNVVSDHEP 120

Query: 123 G-------GGISCQDCGNQAKKDCTHMRCRSCCNTRGFPCQTHVKSTWVPAAKRRQRQQK 182
           G       GG++CQDCGNQAKKDC HMRCR+CC +RGF CQTHVKSTWVPAAKRR+R  +
Sbjct: 121 GGFTVTRQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQ 180

Query: 183 LAALQTH--PKRHT------------DYN------------------IPTTNTSGLEIG- 242
           LA+LQ H    R T            D N                  +   + SGLE+  
Sbjct: 181 LASLQHHSASSRETQNAKRLREASGGDNNDDKDHSGGGGSALANTRVVNANSNSGLEVSQ 240

Query: 243 NFPAELNSPAVFRCVRLSS-TDDTDDQ-YAYQTAVNIGGHVFKGILYDQGPENNYVPGET 289
           + P E+NSPA+FRCVR+SS  +D DDQ YAYQTAVNIGGH+FKGILYDQGPE+       
Sbjct: 241 HLPPEVNSPAIFRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPEHQ------ 300

[Close]

BLAST of Cp4.1LG19g09000 vs. ExPASy Swiss-Prot
Match: Q9FXH7 (Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=SRS7 PE=1 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 9.0e-47
Identity = 142/350 (40.57%), Postives = 187/350 (53.43%), Query Frame = 0


Query: 3   MSGFFTLGSTD----QEHQQPDTNRPNQTLPPDTLFWYKP------GSVELWQPQQHQQH 62
           M+G F LG  D      HQ+ D N        + L+ YK          E++ PQ  QQ 
Sbjct: 1   MAGLFYLGGRDHNKQDHHQEKDHNEDKSN---NYLYLYKDEIYNNNKGFEIFPPQYFQQ- 60

Query: 63  QQHQQQSLFQTRSHNNN---NNNNLYSDESSSRSGNLMMIS------SGSGG------GG 122
           QQ Q  +   T  ++     +  N+ ++ S++RS    ++S      S +GG      G 
Sbjct: 61  QQQQNHAAAPTNLYSFGMVPSGGNINNNRSTNRSLYFNVVSDHEPVRSSTGGFTVTRQGN 120

Query: 123 ISCQDCGNQAKKDCTHMRCRSCCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKR 182
           ++CQDCGNQAKKDC HMRCR+CC +RGF CQTHVKSTWV AAKRR+RQ +LA L    KR
Sbjct: 121 MNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVSAAKRRERQAQLAVLPA--KR 180

Query: 183 HTDYN------------------------------IPTTNTSGLEIGNFPAELNSPAVFR 242
             D N                              +   ++SGLE  + P E++SPAVFR
Sbjct: 181 IRDANSRGGGDDDDDDKEDEKNDSCGGGSALACTRVVNASSSGLETSHLPPEISSPAVFR 240

Query: 243 CVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNY------VPGETSSGGGGGLQ 288
           C+R+SS DD D++YAYQTAV+IGGHVFKGILYDQGP +++      + GETS      L 
Sbjct: 241 CMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSSDHHRYSSSLNGETSHQHHLNLM 300

[Close]

BLAST of Cp4.1LG19g09000 vs. NCBI nr
Match: XP_023518391.1 (protein SHI RELATED SEQUENCE 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 585 bits (1508), Expect = 7.52e-211
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0


Query: 1   MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQHQQQSL 60
           MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQHQQQSL
Sbjct: 1   MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQHQQQSL 60

Query: 61  FQTRSHNNNNNNNLYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCC 120
           FQTRSHNNNNNNNLYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCC
Sbjct: 61  FQTRSHNNNNNNNLYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCC 120

Query: 121 NTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAEL 180
           NTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAEL
Sbjct: 121 NTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAEL 180

Query: 181 NSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYVPGETSSGGGGGL 240
           NSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYVPGETSSGGGGGL
Sbjct: 181 NSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYVPGETSSGGGGGL 240

Query: 241 QPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 288
           QPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS
Sbjct: 241 QPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 288

[Close]

BLAST of Cp4.1LG19g09000 vs. NCBI nr
Match: XP_022963105.1 (protein SHI RELATED SEQUENCE 1-like [Cucurbita moschata])

HSP 1 Score: 564 bits (1453), Expect = 1.46e-202
Identity = 280/288 (97.22%), Postives = 281/288 (97.57%), Query Frame = 0


Query: 1   MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQHQQQSL 60
           MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQ      QSL
Sbjct: 1   MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQ------QSL 60

Query: 61  FQTRSHNNNNNNNLYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCC 120
           FQ RSHNNNNNNNLYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCC
Sbjct: 61  FQARSHNNNNNNNLYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCC 120

Query: 121 NTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAEL 180
           NTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAEL
Sbjct: 121 NTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAEL 180

Query: 181 NSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYVPGETSSGGGGGL 240
           NSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNY+PGETSSGGGGGL
Sbjct: 181 NSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYLPGETSSGGGGGL 240

Query: 241 QPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 288
           QPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS
Sbjct: 241 QPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 282

[Close]

BLAST of Cp4.1LG19g09000 vs. NCBI nr
Match: KAG7026763.1 (Protein SHI RELATED SEQUENCE 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 562 bits (1448), Expect = 8.77e-202
Identity = 281/288 (97.57%), Postives = 282/288 (97.92%), Query Frame = 0


Query: 1   MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQHQQQSL 60
           MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQ   QSL
Sbjct: 1   MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQ---QSL 60

Query: 61  FQTRSHNNNNNNNLYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCC 120
           FQTRSHNNNNN  LYS ESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCC
Sbjct: 61  FQTRSHNNNNN--LYSGESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCC 120

Query: 121 NTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAEL 180
           NTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAEL
Sbjct: 121 NTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAEL 180

Query: 181 NSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYVPGETSSGGGGGL 240
           NSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNY+PGETSSGGGGGL
Sbjct: 181 NSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYLPGETSSGGGGGL 240

Query: 241 QPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 288
           QPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS
Sbjct: 241 QPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 283

[Close]

BLAST of Cp4.1LG19g09000 vs. NCBI nr
Match: KAG6594796.1 (Protein SHI RELATED SEQUENCE 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 558 bits (1438), Expect = 2.93e-200
Identity = 280/288 (97.22%), Postives = 281/288 (97.57%), Query Frame = 0


Query: 1   MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQHQQQSL 60
           MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQ QQHQQ   QSL
Sbjct: 1   MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQPQQHQQ---QSL 60

Query: 61  FQTRSHNNNNNNNLYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCC 120
           FQTRSHNNNNN  LYS ESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCC
Sbjct: 61  FQTRSHNNNNN--LYSGESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCC 120

Query: 121 NTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAEL 180
           NTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAEL
Sbjct: 121 NTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAEL 180

Query: 181 NSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYVPGETSSGGGGGL 240
           NSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNY+PGETSSGGGGGL
Sbjct: 181 NSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYLPGETSSGGGGGL 240

Query: 241 QPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 288
           QPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS
Sbjct: 241 QPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 283

[Close]

BLAST of Cp4.1LG19g09000 vs. NCBI nr
Match: XP_023003919.1 (protein SHI RELATED SEQUENCE 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 555 bits (1430), Expect = 5.44e-199
Identity = 281/290 (96.90%), Postives = 282/290 (97.24%), Query Frame = 0


Query: 1   MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQHQQQSL 60
           MSMSGFFTLGSTDQEHQQ DTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQ   QSL
Sbjct: 1   MSMSGFFTLGSTDQEHQQTDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQ---QSL 60

Query: 61  FQTRSHNNNNNNN--LYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRS 120
           FQTRSHNNNNNNN  LYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAK+DCTHMRCRS
Sbjct: 61  FQTRSHNNNNNNNNNLYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAKRDCTHMRCRS 120

Query: 121 CCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPA 180
           CCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTD NIPTTNTSGLEIGNFPA
Sbjct: 121 CCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTD-NIPTTNTSGLEIGNFPA 180

Query: 181 ELNSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYVPGETSSGGGG 240
           ELNSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYVPGETSS GGG
Sbjct: 181 ELNSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYVPGETSSSGGG 240

Query: 241 GLQPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 288
           GLQPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS
Sbjct: 241 GLQPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 286

[Close]

BLAST of Cp4.1LG19g09000 vs. ExPASy TrEMBL
Match: A0A6J1HH22 (protein SHI RELATED SEQUENCE 1-like OS=Cucurbita moschata OX=3662 GN=LOC111463406 PE=3 SV=1)

HSP 1 Score: 564 bits (1453), Expect = 7.07e-203
Identity = 280/288 (97.22%), Postives = 281/288 (97.57%), Query Frame = 0


Query: 1   MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQHQQQSL 60
           MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQ      QSL
Sbjct: 1   MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQ------QSL 60

Query: 61  FQTRSHNNNNNNNLYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCC 120
           FQ RSHNNNNNNNLYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCC
Sbjct: 61  FQARSHNNNNNNNLYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCC 120

Query: 121 NTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAEL 180
           NTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAEL
Sbjct: 121 NTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAEL 180

Query: 181 NSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYVPGETSSGGGGGL 240
           NSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNY+PGETSSGGGGGL
Sbjct: 181 NSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYLPGETSSGGGGGL 240

Query: 241 QPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 288
           QPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS
Sbjct: 241 QPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 282

[Close]

BLAST of Cp4.1LG19g09000 vs. ExPASy TrEMBL
Match: A0A6J1KUP8 (protein SHI RELATED SEQUENCE 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111497365 PE=3 SV=1)

HSP 1 Score: 555 bits (1430), Expect = 2.63e-199
Identity = 281/290 (96.90%), Postives = 282/290 (97.24%), Query Frame = 0


Query: 1   MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQHQQQSL 60
           MSMSGFFTLGSTDQEHQQ DTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQ   QSL
Sbjct: 1   MSMSGFFTLGSTDQEHQQTDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQ---QSL 60

Query: 61  FQTRSHNNNNNNN--LYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRS 120
           FQTRSHNNNNNNN  LYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAK+DCTHMRCRS
Sbjct: 61  FQTRSHNNNNNNNNNLYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAKRDCTHMRCRS 120

Query: 121 CCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPA 180
           CCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTD NIPTTNTSGLEIGNFPA
Sbjct: 121 CCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTD-NIPTTNTSGLEIGNFPA 180

Query: 181 ELNSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYVPGETSSGGGG 240
           ELNSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYVPGETSS GGG
Sbjct: 181 ELNSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYVPGETSSSGGG 240

Query: 241 GLQPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 288
           GLQPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS
Sbjct: 241 GLQPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 286

[Close]

BLAST of Cp4.1LG19g09000 vs. ExPASy TrEMBL
Match: A0A6J1KY02 (protein SHI RELATED SEQUENCE 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497365 PE=3 SV=1)

HSP 1 Score: 549 bits (1414), Expect = 8.70e-197
Identity = 281/295 (95.25%), Postives = 282/295 (95.59%), Query Frame = 0


Query: 1   MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQHQQQSL 60
           MSMSGFFTLGSTDQEHQQ DTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQ   QSL
Sbjct: 1   MSMSGFFTLGSTDQEHQQTDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQ---QSL 60

Query: 61  FQTRSHNNNNNNN--LYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRS 120
           FQTRSHNNNNNNN  LYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAK+DCTHMRCRS
Sbjct: 61  FQTRSHNNNNNNNNNLYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAKRDCTHMRCRS 120

Query: 121 CCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTS-----GLEI 180
           CCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTD NIPTTNTS     GLEI
Sbjct: 121 CCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTD-NIPTTNTSVTLNLGLEI 180

Query: 181 GNFPAELNSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYVPGETS 240
           GNFPAELNSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYVPGETS
Sbjct: 181 GNFPAELNSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYVPGETS 240

Query: 241 SGGGGGLQPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 288
           S GGGGLQPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS
Sbjct: 241 SSGGGGLQPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 291

[Close]

BLAST of Cp4.1LG19g09000 vs. ExPASy TrEMBL
Match: A0A0A0KGL4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504650 PE=3 SV=1)

HSP 1 Score: 412 bits (1058), Expect = 5.96e-142
Identity = 233/331 (70.39%), Postives = 251/331 (75.83%), Query Frame = 0


Query: 3   MSGFFTLGSTDQ-EHQQPDTNRPNQTL--PPDT-LFWYKPGSVELWQPQQHQQHQQH-QQ 62
           MSGFFTLG       ++ + NRPNQ +  PPD+ LFWYK G+VELWQ QQ QQH  H Q+
Sbjct: 1   MSGFFTLGGGGGGRDEEQNNNRPNQFIHPPPDSSLFWYKAGNVELWQQQQQQQHHHHHQE 60

Query: 63  QSLFQTRSHNNNNNNNLY-------SDESSSRSGNLMMISSGSGGGGISCQDCGNQAKKD 122
           Q LFQT+S                 SDESSSRSGN MMISSGSGGGGISCQDCGNQAKKD
Sbjct: 61  QPLFQTQSRTTTTTTPYSAPLAVRNSDESSSRSGNFMMISSGSGGGGISCQDCGNQAKKD 120

Query: 123 CTHMRCRSCCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTH---------------- 182
           C+HMRCR+CC +RGF C+THVKSTWVPAAKRR+RQ KLAALQTH                
Sbjct: 121 CSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQTHHHHHHQQQLQLHGGDN 180

Query: 183 -PKRHTDYN--------IPTTN-TSGLEIGNFPAELNSPAVFRCVRLSSTDDTDDQYAYQ 242
            PKRH DYN        IPT N TSGLEIGNFPAELNSPAVFRCVR+SS DDTDDQYAYQ
Sbjct: 181 NPKRHRDYNSSSLACTLIPTNNNTSGLEIGNFPAELNSPAVFRCVRVSSADDTDDQYAYQ 240

Query: 243 TAVNIGGHVFKGILYDQGPENNYVP-GETSSGGGG---GLQPLNFIAGAADA---NAASS 288
           TAVNIGGHVFKGILYDQGPENNY+P GETSSGGGG   G+QPLNFIAGAADA   +  S+
Sbjct: 241 TAVNIGGHVFKGILYDQGPENNYIPPGETSSGGGGSSSGVQPLNFIAGAADATTGSGGST 300

[Close]

BLAST of Cp4.1LG19g09000 vs. ExPASy TrEMBL
Match: A0A5A7SN81 (Protein SHI RELATED SEQUENCE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001580 PE=3 SV=1)

HSP 1 Score: 408 bits (1048), Expect = 1.78e-140
Identity = 230/329 (69.91%), Postives = 248/329 (75.38%), Query Frame = 0


Query: 3   MSGFFTLGSTDQ-EHQQPDTNRPNQTL--PPDT-LFWYKPGSVELWQPQQHQQHQQHQQQ 62
           MSGFFTLG       ++ + NRPNQ +  PPD+ LFWYK G+VELWQ QQ Q H  HQ+Q
Sbjct: 1   MSGFFTLGGGGGGREEEQNNNRPNQFIHPPPDSSLFWYKAGNVELWQQQQ-QHHHHHQEQ 60

Query: 63  SLFQTRSHNNNNNNNLY-------SDESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDC 122
            LFQT+S                 SDESSSRSGN MMISSGSGGGGISCQDCGNQAKKDC
Sbjct: 61  PLFQTQSRTTTTTTPYSAPLTVRNSDESSSRSGNFMMISSGSGGGGISCQDCGNQAKKDC 120

Query: 123 THMRCRSCCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTH----------------P 182
           +HMRCR+CC +RGF C+THVKSTWVPAAKRR+RQ KLAALQTH                P
Sbjct: 121 SHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQTHHHHQQQQLQLHGGDNNP 180

Query: 183 KRHTDYN--------IPTTN-TSGLEIGNFPAELNSPAVFRCVRLSSTDDTDDQYAYQTA 242
           KRH DYN        IPT N TSGLEIGNFPAELNSPAVFRCVR+SS DDTDDQYAYQTA
Sbjct: 181 KRHRDYNSSSLACTLIPTNNNTSGLEIGNFPAELNSPAVFRCVRVSSADDTDDQYAYQTA 240

Query: 243 VNIGGHVFKGILYDQGPENNYVP-GETSSGGGG---GLQPLNFIAGAADA---NAASSAA 288
           VNIGGHVFKGILYDQGPENNY+P GETSSGGGG   G+QPLNFI GAAD    +  S+AA
Sbjct: 241 VNIGGHVFKGILYDQGPENNYIPPGETSSGGGGSSSGVQPLNFITGAADTTTGSGGSTAA 300

[Close]

BLAST of Cp4.1LG19g09000 vs. TAIR 10
Match: AT3G51060.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 249.2 bits (635), Expect = 4.0e-66
Identity = 167/375 (44.53%), Postives = 215/375 (57.33%), Query Frame = 0


Query: 3   MSGFFTL---------GSTDQEHQQPDTNRPNQTLPP--DTLFWYKP------------- 62
           M+GFF+L         G  +QE  + +TN P    PP  +   WY+              
Sbjct: 1   MAGFFSLDGGGGGGGGGGNNQEDHRSNTNPP----PPVSEAWLWYRNPNVNANANTNVNA 60

Query: 63  ----------GSVELWQPQQHQ----QHQQHQQQ-SLFQT--------RSHNNNNNNNLY 122
                     G++ELWQ    Q    QHQQHQQ+  L+ +         +HN  + +   
Sbjct: 61  NAPSSSNAALGTLELWQNHNQQEIMFQHQQHQQRLDLYSSAAGLGVGPSNHNQFDISGET 120

Query: 123 SDESSSRSGNLMMI---SSGSGGGGISCQDCGNQAKKDCTHMRCRSCCNTRGFPCQTHVK 182
           S   + R+  +MMI    SG G GG+SCQDCGNQAKKDC+HMRCR+CC +RGF C THV+
Sbjct: 121 STAGAGRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRGFECSTHVR 180

Query: 183 STWVPAAKRRQRQQKLAALQTH---------PKRHTDYNIPTTNT----------SGLEI 242
           STWVPAAKRR+RQQ+LA +Q           PKRH + N+P T++          SGLE+
Sbjct: 181 STWVPAAKRRERQQQLATVQPQTQLPRGESVPKRHRE-NLPATSSSLVCTRIPSHSGLEV 240

Query: 243 GNFPAELNSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPEN------NY 289
           GNFPAE++S AVFRCVR+SS +D ++++AYQTAV+IGGH+FKGILYD GP +      N 
Sbjct: 241 GNFPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLGPGSSGGGGYNV 300

[Close]

BLAST of Cp4.1LG19g09000 vs. TAIR 10
Match: AT5G66350.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 232.3 bits (591), Expect = 5.0e-61
Identity = 151/340 (44.41%), Postives = 198/340 (58.24%), Query Frame = 0


Query: 3   MSGFFTL----GSTDQEHQQPDTNRPNQTLPPDTLFWYKP--------------GSVELW 62
           M+GFF+L    G    ++ + +TN P+ +     L+   P              G++ELW
Sbjct: 1   MAGFFSLGHGGGGNTPDNHRTNTNNPSSSGTESWLWCRNPNSNADGGEAGPSYKGTLELW 60

Query: 63  QPQQH------QQHQQHQQQSLFQTRSHNNNNNNNLYSDESSSRSGNLMMISSGSGGGGI 122
           Q   +      QQ QQ Q+  L+ + +      +N    E+S   G LMM+ SGSG GG 
Sbjct: 61  QHPNNQEIIFQQQQQQQQRLDLYTSAAGLGVGPSNRSLIETS--GGALMMMRSGSGSGGP 120

Query: 123 SCQDCGNQAKKDCTHMRCRSCCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQ------ 182
           SCQDCGNQ+KKDC+HMRCR+CC +RG  C THVKSTWVPAAKRR+RQQ+L+  Q      
Sbjct: 121 SCQDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLSTGQQPQQLG 180

Query: 183 -THPKRHTD-----------YNIPTTNTSGLEIGNFPAELNSPAVFRCVRLSSTDDTDDQ 242
            + PKR  +             IP+ NTSGLE+GNFP E++S AVFRCVR+SS DD +++
Sbjct: 181 GSVPKRQRERIPARSTSMAYTRIPSNNTSGLEVGNFPPEVSSSAVFRCVRVSSVDDEEEE 240

Query: 243 YAYQTAVNIGGHVFKGILYDQGPENNYVPGETSSGGGGGLQPLNFIAGAADANAAS---- 289
           YAY+TAV+IGGHVFKG+LYDQGP          S  GGG QPLN I     A+++S    
Sbjct: 241 YAYKTAVSIGGHVFKGVLYDQGPAER-------SSSGGGSQPLNLITAGPSASSSSPNVS 300

[Close]

BLAST of Cp4.1LG19g09000 vs. TAIR 10
Match: AT1G75520.1 (SHI-related sequence 5 )

HSP 1 Score: 211.8 bits (538), Expect = 7.1e-55
Identity = 158/366 (43.17%), Postives = 191/366 (52.19%), Query Frame = 0


Query: 3   MSGFFTLGSTD-------QEHQQPDTNRPNQTLPPDTLFWYKP------GSVELWQPQ-- 62
           M+GFF LG  D       Q+H Q D +  +Q    + L+ YK          E+W PQ  
Sbjct: 1   MAGFFYLGGRDNNSNNNKQDHHQVDKDHHHQD-KSNYLYLYKDEIYNNNKGFEIWPPQYF 60

Query: 63  QHQQHQQHQQQ-------------SLFQTRSHNNNNNNNLYSDESSSRSGNLMMISSGSG 122
           Q Q+HQQ QQQ              +  + S +NNNNN        SRS    ++S    
Sbjct: 61  QQQEHQQQQQQQQHASAPANFYSFGMVPSGSSSNNNNNR-------SRSLYFNVVSDHEP 120

Query: 123 G-------GGISCQDCGNQAKKDCTHMRCRSCCNTRGFPCQTHVKSTWVPAAKRRQRQQK 182
           G       GG++CQDCGNQAKKDC HMRCR+CC +RGF CQTHVKSTWVPAAKRR+R  +
Sbjct: 121 GGFTVTRQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQ 180

Query: 183 LAALQTH--PKRHT------------DYN------------------IPTTNTSGLEIG- 242
           LA+LQ H    R T            D N                  +   + SGLE+  
Sbjct: 181 LASLQHHSASSRETQNAKRLREASGGDNNDDKDHSGGGGSALANTRVVNANSNSGLEVSQ 240

Query: 243 NFPAELNSPAVFRCVRLSS-TDDTDDQ-YAYQTAVNIGGHVFKGILYDQGPENNYVPGET 289
           + P E+NSPA+FRCVR+SS  +D DDQ YAYQTAVNIGGH+FKGILYDQGPE+       
Sbjct: 241 HLPPEVNSPAIFRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPEHQ------ 300

[Close]

BLAST of Cp4.1LG19g09000 vs. TAIR 10
Match: AT1G19790.1 (SHI-related sequence 7 )

HSP 1 Score: 188.7 bits (478), Expect = 6.4e-48
Identity = 142/350 (40.57%), Postives = 187/350 (53.43%), Query Frame = 0


Query: 3   MSGFFTLGSTD----QEHQQPDTNRPNQTLPPDTLFWYKP------GSVELWQPQQHQQH 62
           M+G F LG  D      HQ+ D N        + L+ YK          E++ PQ  QQ 
Sbjct: 1   MAGLFYLGGRDHNKQDHHQEKDHNEDKSN---NYLYLYKDEIYNNNKGFEIFPPQYFQQ- 60

Query: 63  QQHQQQSLFQTRSHNNN---NNNNLYSDESSSRSGNLMMIS------SGSGG------GG 122
           QQ Q  +   T  ++     +  N+ ++ S++RS    ++S      S +GG      G 
Sbjct: 61  QQQQNHAAAPTNLYSFGMVPSGGNINNNRSTNRSLYFNVVSDHEPVRSSTGGFTVTRQGN 120

Query: 123 ISCQDCGNQAKKDCTHMRCRSCCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKR 182
           ++CQDCGNQAKKDC HMRCR+CC +RGF CQTHVKSTWV AAKRR+RQ +LA L    KR
Sbjct: 121 MNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVSAAKRRERQAQLAVLPA--KR 180

Query: 183 HTDYN------------------------------IPTTNTSGLEIGNFPAELNSPAVFR 242
             D N                              +   ++SGLE  + P E++SPAVFR
Sbjct: 181 IRDANSRGGGDDDDDDKEDEKNDSCGGGSALACTRVVNASSSGLETSHLPPEISSPAVFR 240

Query: 243 CVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNY------VPGETSSGGGGGLQ 288
           C+R+SS DD D++YAYQTAV+IGGHVFKGILYDQGP +++      + GETS      L 
Sbjct: 241 CMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSSDHHRYSSSLNGETSHQHHLNLM 300

[Close]

BLAST of Cp4.1LG19g09000 vs. TAIR 10
Match: AT1G19790.2 (SHI-related sequence 7 )

HSP 1 Score: 188.7 bits (478), Expect = 6.4e-48
Identity = 142/350 (40.57%), Postives = 187/350 (53.43%), Query Frame = 0


Query: 3   MSGFFTLGSTD----QEHQQPDTNRPNQTLPPDTLFWYKP------GSVELWQPQQHQQH 62
           M+G F LG  D      HQ+ D N        + L+ YK          E++ PQ  QQ 
Sbjct: 1   MAGLFYLGGRDHNKQDHHQEKDHNEDKSN---NYLYLYKDEIYNNNKGFEIFPPQYFQQ- 60

Query: 63  QQHQQQSLFQTRSHNNN---NNNNLYSDESSSRSGNLMMIS------SGSGG------GG 122
           QQ Q  +   T  ++     +  N+ ++ S++RS    ++S      S +GG      G 
Sbjct: 61  QQQQNHAAAPTNLYSFGMVPSGGNINNNRSTNRSLYFNVVSDHEPVRSSTGGFTVTRQGN 120

Query: 123 ISCQDCGNQAKKDCTHMRCRSCCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKR 182
           ++CQDCGNQAKKDC HMRCR+CC +RGF CQTHVKSTWV AAKRR+RQ +LA L    KR
Sbjct: 121 MNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVSAAKRRERQAQLAVLPA--KR 180

Query: 183 HTDYN------------------------------IPTTNTSGLEIGNFPAELNSPAVFR 242
             D N                              +   ++SGLE  + P E++SPAVFR
Sbjct: 181 IRDANSRGGGDDDDDDKEDEKNDSCGGGSALACTRVVNASSSGLETSHLPPEISSPAVFR 240

Query: 243 CVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNY------VPGETSSGGGGGLQ 288
           C+R+SS DD D++YAYQTAV+IGGHVFKGILYDQGP +++      + GETS      L 
Sbjct: 241 CMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSSDHHRYSSSLNGETSHQHHLNLM 300

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g09000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SD40	5.6e-65	44.53	Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2	[more]
Q9XGX0	7.1e-60	44.41	Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1	[more]
K4B6C9	6.6e-58	44.66	Protein EXPRESSION OF TERPENOIDS 1 OS=Solanum lycopersicum OX=4081 GN=EOT1 PE=2 ...	[more]
Q9LQZ5	9.9e-54	43.17	Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1	[more]
Q9FXH7	9.0e-47	40.57	Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=SRS7 PE=1 SV=1	[more]

BLAST of Cp4.1LG19g09000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023518391.1	7.52e-211	100.00	protein SHI RELATED SEQUENCE 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022963105.1	1.46e-202	97.22	protein SHI RELATED SEQUENCE 1-like [Cucurbita moschata]	[more]
KAG7026763.1	8.77e-202	97.57	Protein SHI RELATED SEQUENCE 1, partial [Cucurbita argyrosperma subsp. argyrospe...	[more]
KAG6594796.1	2.93e-200	97.22	Protein SHI RELATED SEQUENCE 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023003919.1	5.44e-199	96.90	protein SHI RELATED SEQUENCE 1-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG19g09000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HH22	7.07e-203	97.22	protein SHI RELATED SEQUENCE 1-like OS=Cucurbita moschata OX=3662 GN=LOC11146340...	[more]
A0A6J1KUP8	2.63e-199	96.90	protein SHI RELATED SEQUENCE 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1KY02	8.70e-197	95.25	protein SHI RELATED SEQUENCE 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A0A0KGL4	5.96e-142	70.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504650 PE=3 SV=1	[more]
A0A5A7SN81	1.78e-140	69.91	Protein SHI RELATED SEQUENCE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Cp4.1LG19g09000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51060.1	4.0e-66	44.53	Lateral root primordium (LRP) protein-related	[more]
AT5G66350.1	5.0e-61	44.41	Lateral root primordium (LRP) protein-related	[more]
AT1G75520.1	7.1e-55	43.17	SHI-related sequence 5	[more]
AT1G19790.1	6.4e-48	40.57	SHI-related sequence 7	[more]
AT1G19790.2	6.4e-48	40.57	SHI-related sequence 7	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006510	Zinc finger, lateral root primordium type 1	TIGRFAM	TIGR01623	TIGR01623	coord: 99..141 e-value: 1.5E-24 score: 83.6
None	No IPR available	PFAM	PF05142	DUF702	coord: 97..224 e-value: 5.2E-54 score: 182.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	PANTHER	PTHR31604:SF4	PROTEIN SHORT INTERNODES	coord: 3..284
IPR006511	SHORT INTERNODES, C-terminal	TIGRFAM	TIGR01624	TIGR01624	coord: 176..223 e-value: 2.5E-27 score: 92.5
IPR007818	SHI protein family	PANTHER	PTHR31604	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 3..284

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG19g09000.1	Cp4.1LG19g09000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0009851	auxin biosynthetic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding