Cp4.1LG19g07850 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG19g07850
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	chaperonin-like RBCX protein 1, chloroplastic
Location	Cp4.1LG19: 6761532 .. 6764950 (-)
RNA-Seq Expression	Cp4.1LG19g07850
Synteny	Cp4.1LG19g07850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAACGTGTAGATGTTCTGATTGAACGTGAACGTGTGGGACCACTTTTAAATATTTGAGAAATTTGATTACAAAATTAAGAATATGATGATAAATTATGCAAACTTTAATGTATAATTTTCTGAATTTTGAGATGTAAGAGAAAATTTAACAAATATATGTACGCGTTGGCCAGCTCCCCACCCGTTGACAAACATATTTAATACAAGATTTATACGGAATTTATTGCAATAATTAAGAGATATACATCACAACTATAAACTATGATTTTTTTTTCTTAGAAGATAGAGCATGACATATCATTCAACGAACCAAACAAAATGTCTCAGTTGGGATGAAAAGAGCTCAAACTCACCCAACTTTGCTTTTGGTCTCCTTTACCGACCTTATGTAAGTGGAAATGTATTCTTTACTTATAAACTCTTGATTAACCCTTTGATTAGCGGATGTGAGACTCCTCTCCCAACAATTCTCAACAACAACCAAGATACCAATGTAAGAATCAAGCCATTATTGATGATCGAGTTGTAATAGCAGGAACCTTTCTATTCCCACCCAGTAAGCTCAATCATTCTGATTAAAGCACAAGACTTCATTGATAATCTGTTGCATGCGTCCATCGGCTTATTATACCATCTGAGAGAGATTTCGGTGGTTGCAGCAAATTGTACAGTTTCAGGAGGCCACATTGGAGCCTCGACGATTCATTATAACATTCAAGATCTTGCCAGCAGGCCACATGGAGACTTTTTCATCCTGTTCTGCTAGCTGGAAAGCTTCCTCTTCTGTACATGTTTCCTCAACCATTGATCTGAACAGGTAGGACAATTGTGGAGTTCTTCAGGTAGGACACTATTTCTCCTGTTTGAAGGTGAATCATATTTCTATTTTAAATTTTCTTTATGTTTTAAGTAAAAGCAAAATGAACCTATCAAATCCCAAAATCTTAATTTGCTTTCAAAATTTGATGCCAATATGATTCTTCACAAGGACTCAAGTGGCTAACACACCTGATGCACACCCCTTGTAGATGCAAGAAGGTTCAAACACAACCATAAAGCCTTTAAATATTCAAGTACTCAAGGGAGGCAAGGGGGATAAGAAGTCACACCTCGGGGAAGGACTCGTATGCCAACAATTCTGAGTGTCCTAACCAAGAACAAAGTTCCTCAGCCAAGTGAGGTGCGTACAGTGAAAGCAACAAAGTGAATGCTTCAACAATAGACCTTGGATATCTGTCCCTAGCTAAAAAATGGCATCAGTCTGATTGGAAGAGAAGTGAAATGGCAAAGAAATAATGTAATCTTAAACATTAATATCCAAATATAACATTTCTGTCAAAATTGGATCTAGATATCAAGTTTTTTAATCTCTTGATATATGCCAACCAAAGCATAGTTCATATCGTTAACGCATATGCCATTGATCAAGAGGTTATAGGTTCGAATCCCCCCACCTCCAATGTAGTCCAATAACGTTATATGCCGAACTCCATTGTAGCTGAGCTTCCTGTGTTGAATCGTGTCCCTTCAACTTCTTCGGTTACCTGGAATTTGAATCATCATTTAGTCAAGGGAGCAACTGCATTCATAAAACACAAATTCAATATGCCAATTGTAGTGGTTAATATAACCCATCAAATGGGTTATTTATGTGAAACCTGAACCTATTCATGCAGCACTTGGAAGGTGAACTTTAATGTTAATTATAGTTTGGTTGATATCTCTTTCCTATTTTCAGATGCATTCACAGGTAAAATTAGAGATCTCCTTTGGGAATGAACTAATGACGAAGTCAACAAACAAAATAGAGAAATACCCAAGAATCTGCTTTTGCAAGTGGAGCTTCCCCTGTTCCCGTGGGTATAAAATCATCAAATTCAGGCATTGTAAGCTAACTGGAAGCTGGAAGAGCAAACCTCAATAGCCTACTGTTCCGCAGGCAATCCAAATGCATTCCAGCCCATTGGGTGCAAAACAGAGTAATCTTGCATACGTTTCAATCTAGCAAGAATGTCCGTAGCAGTATAACCTAAAGGATGACCAACATGTAACCCTGAATTTCTATTTTGGGCCGAATCAAGTGGGCTTAATTTGTTCTAAATGGGCTAATTTCAGTAATGGTCTGATATTTTGAGTGGTTATTTATGTGGTTTGAATGAACCTCCCTCGAAGAAAGCTCGAGGCAAAATATCTCTCTGGCTCTCTGGTTCCAGTTTTCTTGTGAAGCAGTTCGATAAAGCTCGAGGCCATCTATGGAATCATGTGCAAGGATTCTCTCCCCTACTCACTTCCCTTCTGTTTTCCCACTGCCCAATTTAAACAGAAGAAATTTCAATCCAGTTTGGCCAAGAAAGCCAGAAGCTTCCAAGTCTTTGCGCTTGCATTGCCATAAGATGTATGTCCCCGGTGGGTTCTCTCTTTCTATTTCTTTCTGTCTTTCCATTTCATATACACAGATTTTGTTCGTTCTATAAATTCATAATCAGGGTTTGGAGAAGCATCGCCCGAAGCGAAGGCAGCCAAGAATTTGCACAATTTCTTCACGTATGTTGCTGTTAGGATCGTGACTGCGCAGCTTGAGGTTGCTCTTCAATTATTACTCTGTTTTAATTGCTCTGCGATGTTGTTGGTATTGATTCTTGTTCTGGTAGAACAGAGCTACAATCCAGAGGCGCACGCAGAATTAATGGAGTTTCTTGATAGGCATTCACTGAACGATGGGGACAAGTTCCTGAGCAATTTGATGCGGGAATCCTCAAGGCATAAGAGTCTCGGTAAAACCCAATTCTACACTTGATAGATAATTTAGTCAAGAATGAAGAACATTGAAGTTTATTGTTTGTGTTTGACTGTTTCTAACAATGAGCCTTAAACTGATGGTCAAATTCATGGCTGGGGGGACAGCATTGCGCATACTAGAGGTGAGTCTGTTCACTTGAGACTTGATTAATGCTTCCCCCACCGTGGAAACGCTCATAAGCTGGCAAGTTATTTGATTCCAGGTTCGATCTGCATACTGCAAAAACGATTTCGAATGGGATAACCTCAAGCGATTAGCATCCAAAGTAAGGAAATTGGTCTGTTTCTCTACCATTTTCTTAATAGCATTATGTTCAGTTGTTTGGTAAGTTGCTGCTATTCATTATTTTCAGATGGTTGGTGAATCTAACACGAGACTGATGAGGGAATATGTGACAGAGACGAGTCCAGATGCCGAAAAGTGAGGAAATTCTGCACCTTCTGTTTTTGCTATTATTATACATGAATTCAGTGTATTTATAATATGATCATGCCACTCCACTTGTTGGGGCTTTGTTCCAAACAAAAATTGGCAAACTCAATCGTGGAAATATATACAGATTGAATTTTTGTTGCGAGTTACAAAATGCCATAATGGAATAGAACAGACAATTGTTCTC

mRNA sequence

TAACGTATGCATTCACAGCTCGAGGCCATCTATGGAATCATGTGCAAGGATTCTCTCCCCTACTCACTTCCCTTCTGTTTTCCCACTGCCCAATTTAAACAGAAGAAATTTCAATCCAGTTTGGCCAAGAAAGCCAGAAGCTTCCAAGTCTTTGCGCTTGCATTGCCATAAGATGTATGTCCCCGGGTTTGGAGAAGCATCGCCCGAAGCGAAGGCAGCCAAGAATTTGCACAATTTCTTCACGTATGTTGCTGTTAGGATCGTGACTGCGCAGCTTGAGAGCTACAATCCAGAGGCGCACGCAGAATTAATGGAGTTTCTTGATAGGCATTCACTGAACGATGGGGACAAGTTCCTGAGCAATTTGATGCGGGAATCCTCAAGGCATAAGAGTCTCGCATTGCGCATACTAGAGGTTCGATCTGCATACTGCAAAAACGATTTCGAATGGGATAACCTCAAGCGATTAGCATCCAAAATGGTTGGTGAATCTAACACGAGACTGATGAGGGAATATGTGACAGAGACGAGTCCAGATGCCGAAAAGTGAGGAAATTCTGCACCTTCTGTTTTTGCTATTATTATACATGAATTCAGTGTATTTATAATATGATCATGCCACTCCACTTGTTGGGGCTTTGTTCCAAACAAAAATTGGCAAACTCAATCGTGGAAATATATACAGATTGAATTTTTGTTGCGAGTTACAAAATGCCATAATGGAATAGAACAGACAATTGTTCTC

Coding sequence (CDS)

ATGGAATCATGTGCAAGGATTCTCTCCCCTACTCACTTCCCTTCTGTTTTCCCACTGCCCAATTTAAACAGAAGAAATTTCAATCCAGTTTGGCCAAGAAAGCCAGAAGCTTCCAAGTCTTTGCGCTTGCATTGCCATAAGATGTATGTCCCCGGGTTTGGAGAAGCATCGCCCGAAGCGAAGGCAGCCAAGAATTTGCACAATTTCTTCACGTATGTTGCTGTTAGGATCGTGACTGCGCAGCTTGAGAGCTACAATCCAGAGGCGCACGCAGAATTAATGGAGTTTCTTGATAGGCATTCACTGAACGATGGGGACAAGTTCCTGAGCAATTTGATGCGGGAATCCTCAAGGCATAAGAGTCTCGCATTGCGCATACTAGAGGTTCGATCTGCATACTGCAAAAACGATTTCGAATGGGATAACCTCAAGCGATTAGCATCCAAAATGGTTGGTGAATCTAACACGAGACTGATGAGGGAATATGTGACAGAGACGAGTCCAGATGCCGAAAAGTGA

Protein sequence

MESCARILSPTHFPSVFPLPNLNRRNFNPVWPRKPEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK

Homology

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BLAST of Cp4.1LG19g07850 vs. ExPASy Swiss-Prot
Match: Q94AU9 (Chaperonin-like RBCX protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCX1 PE=1 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 9.5e-52
Identity = 105/150 (70.00%), Postives = 121/150 (80.67%), Query Frame = 0


Query: 28  NPVWPRKPEAS----------KSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRI 87
           NP + ++P  S          K  R+  +KMYVPGFGEASPEAKAAK+LH+FFTYVAVRI
Sbjct: 17  NPKFGKRPLVSYPLMQSSRKCKQTRICSNKMYVPGFGEASPEAKAAKHLHDFFTYVAVRI 76

Query: 88  VTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKND 147
           V+AQLESYNPEA+ EL EFLD +S++DGDKF + LMR SSRH +LALRILEVRSAYCKND
Sbjct: 77  VSAQLESYNPEAYMELREFLDTNSVSDGDKFCATLMRRSSRHMNLALRILEVRSAYCKND 136

Query: 148 FEWDNLKRLASKMVGESNTRLMREYVTETS 168
           FEWDN+KRLA K V +SNTRLMREYV ETS
Sbjct: 137 FEWDNMKRLAFKNVDDSNTRLMREYVLETS 166

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BLAST of Cp4.1LG19g07850 vs. ExPASy Swiss-Prot
Match: Q44177 (RuBisCO chaperone RbcX OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=rbcX PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.1e-05
Identity = 32/95 (33.68%), Postives = 48/95 (50.53%), Query Frame = 0


Query: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120
           + A  L ++ TY AVR+++ QL   NP     L EF  RH + + D +L  +M E   +K
Sbjct: 9   ETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLE---NK 68

Query: 121 SLALRILEVRSAYCKNDFEWDNLKRLASKMVGESN 156
            L LRIL VR    +   E+  L  +    + +SN
Sbjct: 69  ELVLRILTVRENLAEGVLEF--LPEMVLSQIKQSN 98

[Close]

BLAST of Cp4.1LG19g07850 vs. ExPASy Swiss-Prot
Match: Q55670 (RuBisCO chaperone RbcX OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rbcX PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 9.6e-04
Identity = 35/111 (31.53%), Postives = 56/111 (50.45%), Query Frame = 0


Query: 64  KNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLA 123
           K L ++ TY AV  + ++L   NP     L ++L  HS+ +G+ FL+ L+ E   +K L 
Sbjct: 14  KVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDE---NKELV 73

Query: 124 LRILEVRSAYCKNDFEWDNLKRLASKMVGESN---TRLMREYVTETSPDAE 172
           LRIL VR    ++    D L  +    + ESN    R + E +T T  + +
Sbjct: 74  LRILAVREDIAESVL--DFLPGMTRNSLAESNIAHRRHLLERLTRTVAEVD 119

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BLAST of Cp4.1LG19g07850 vs. NCBI nr
Match: XP_023518339.1 (chaperonin-like RBCX protein 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 353 bits (906), Expect = 6.13e-123
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MESCARILSPTHFPSVFPLPNLNRRNFNPVWPRKPEASKSLRLHCHKMYVPGFGEASPEA 60
           MESCARILSPTHFPSVFPLPNLNRRNFNPVWPRKPEASKSLRLHCHKMYVPGFGEASPEA
Sbjct: 1   MESCARILSPTHFPSVFPLPNLNRRNFNPVWPRKPEASKSLRLHCHKMYVPGFGEASPEA 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120
           KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK
Sbjct: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120

Query: 121 SLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK 172
           SLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
Sbjct: 121 SLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK 172

[Close]

BLAST of Cp4.1LG19g07850 vs. NCBI nr
Match: XP_023003335.1 (chaperonin-like RBCX protein 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 347 bits (890), Expect = 1.69e-120
Identity = 168/172 (97.67%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MESCARILSPTHFPSVFPLPNLNRRNFNPVWPRKPEASKSLRLHCHKMYVPGFGEASPEA 60
           MESCARILSPTHFPS+FPLPNLNR NFNPVWP+KPEASKSLRLHCHKMYVPGFGEASPEA
Sbjct: 1   MESCARILSPTHFPSLFPLPNLNRSNFNPVWPKKPEASKSLRLHCHKMYVPGFGEASPEA 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120
           KAAKNLHNFFTYVAVRIVTAQLESYNPEAH ELMEFLDRHSLNDGDKFLSNLMRESSRHK
Sbjct: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHTELMEFLDRHSLNDGDKFLSNLMRESSRHK 120

Query: 121 SLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK 172
           SLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
Sbjct: 121 SLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK 172

[Close]

BLAST of Cp4.1LG19g07850 vs. NCBI nr
Match: XP_022926897.1 (chaperonin-like RBCX protein 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 343 bits (880), Expect = 5.66e-119
Identity = 167/172 (97.09%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 1   MESCARILSPTHFPSVFPLPNLNRRNFNPVWPRKPEASKSLRLHCHKMYVPGFGEASPEA 60
           MESCARILSPTHFPS+FP PNLNR NFNPVWP+K EASKSLRLHCHKMYVPGFGEASPEA
Sbjct: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEA 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120
           KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK
Sbjct: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120

Query: 121 SLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK 172
           SLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
Sbjct: 121 SLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK 172

[Close]

BLAST of Cp4.1LG19g07850 vs. NCBI nr
Match: KAG6594678.1 (Chaperonin-like RBCX protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 340 bits (873), Expect = 6.61e-118
Identity = 166/172 (96.51%), Postives = 168/172 (97.67%), Query Frame = 0


Query: 1   MESCARILSPTHFPSVFPLPNLNRRNFNPVWPRKPEASKSLRLHCHKMYVPGFGEASPEA 60
           MESCARILSPTHFPS+FP PNLNR NFNPVWP+K  ASKSLRLHCHKMYVPGFGEASPEA
Sbjct: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEA 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120
           KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK
Sbjct: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120

Query: 121 SLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK 172
           SLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
Sbjct: 121 SLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK 172

[Close]

BLAST of Cp4.1LG19g07850 vs. NCBI nr
Match: KAG7026647.1 (Chaperonin-like RBCX protein 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 327 bits (837), Expect = 4.90e-112
Identity = 166/197 (84.26%), Postives = 168/197 (85.28%), Query Frame = 0


Query: 1   MESCARILSPTHFPSVFPLPNLNRRNFNPVWPRKPEASKSLRLHCHKMYVPGFGEASPEA 60
           MESCARILSPTHFPS+FP PNLNR NFNPVWP+K  ASKSLRLHCHKMYVPGFGEASPEA
Sbjct: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEA 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLE-------------------------SYNPEAHAELME 120
           KAAKNLHNFFTYVAVRIVTAQLE                         SYNPEAHAELME
Sbjct: 61  KAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAMLLVLILVLVEQSYNPEAHAELME 120

Query: 121 FLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESN 172
           FLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESN
Sbjct: 121 FLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESN 180

[Close]

BLAST of Cp4.1LG19g07850 vs. ExPASy TrEMBL
Match: A0A6J1KRH1 (chaperonin-like RBCX protein 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111496972 PE=4 SV=1)

HSP 1 Score: 347 bits (890), Expect = 8.18e-121
Identity = 168/172 (97.67%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MESCARILSPTHFPSVFPLPNLNRRNFNPVWPRKPEASKSLRLHCHKMYVPGFGEASPEA 60
           MESCARILSPTHFPS+FPLPNLNR NFNPVWP+KPEASKSLRLHCHKMYVPGFGEASPEA
Sbjct: 1   MESCARILSPTHFPSLFPLPNLNRSNFNPVWPKKPEASKSLRLHCHKMYVPGFGEASPEA 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120
           KAAKNLHNFFTYVAVRIVTAQLESYNPEAH ELMEFLDRHSLNDGDKFLSNLMRESSRHK
Sbjct: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHTELMEFLDRHSLNDGDKFLSNLMRESSRHK 120

Query: 121 SLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK 172
           SLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
Sbjct: 121 SLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK 172

[Close]

BLAST of Cp4.1LG19g07850 vs. ExPASy TrEMBL
Match: A0A6J1EFL9 (chaperonin-like RBCX protein 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433874 PE=4 SV=1)

HSP 1 Score: 343 bits (880), Expect = 2.74e-119
Identity = 167/172 (97.09%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 1   MESCARILSPTHFPSVFPLPNLNRRNFNPVWPRKPEASKSLRLHCHKMYVPGFGEASPEA 60
           MESCARILSPTHFPS+FP PNLNR NFNPVWP+K EASKSLRLHCHKMYVPGFGEASPEA
Sbjct: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEA 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120
           KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK
Sbjct: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120

Query: 121 SLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK 172
           SLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
Sbjct: 121 SLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK 172

[Close]

BLAST of Cp4.1LG19g07850 vs. ExPASy TrEMBL
Match: A0A5D3CNU4 (Chaperonin-like RBCX protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006230 PE=4 SV=1)

HSP 1 Score: 299 bits (766), Expect = 6.83e-102
Identity = 150/173 (86.71%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MESCARILSPTHFPSVFPLPNLNRRNFNPVWPRKPEASKSLRLHCHKMYVPGFGEASPEA 60
           MES ARILSPT FPS+F LPNLNR N  PV P KP ASKS+RLHC KMYVPGFGEASPE+
Sbjct: 1   MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120
           KAA+NLHNFFTYVAVRIVTAQLESYNPEA+ ELMEFLDRHSLNDGDKFL++LMRESSRHK
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120

Query: 121 SLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSP-DAEK 172
           SLALRILEVRSAYCKNDFEWDNLKRLA KMVGESNTR+MREY+TETSP D EK
Sbjct: 121 SLALRILEVRSAYCKNDFEWDNLKRLAFKMVGESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of Cp4.1LG19g07850 vs. ExPASy TrEMBL
Match: A0A1S3B054 (uncharacterized protein LOC103484635 OS=Cucumis melo OX=3656 GN=LOC103484635 PE=4 SV=1)

HSP 1 Score: 299 bits (766), Expect = 6.83e-102
Identity = 150/173 (86.71%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MESCARILSPTHFPSVFPLPNLNRRNFNPVWPRKPEASKSLRLHCHKMYVPGFGEASPEA 60
           MES ARILSPT FPS+F LPNLNR N  PV P KP ASKS+RLHC KMYVPGFGEASPE+
Sbjct: 1   MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES 60

Query: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120
           KAA+NLHNFFTYVAVRIVTAQLESYNPEA+ ELMEFLDRHSLNDGDKFL++LMRESSRHK
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120

Query: 121 SLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSP-DAEK 172
           SLALRILEVRSAYCKNDFEWDNLKRLA KMVGESNTR+MREY+TETSP D EK
Sbjct: 121 SLALRILEVRSAYCKNDFEWDNLKRLAFKMVGESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of Cp4.1LG19g07850 vs. ExPASy TrEMBL
Match: A0A6J1BTL5 (chaperonin-like RBCX protein 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111005638 PE=4 SV=1)

HSP 1 Score: 299 bits (766), Expect = 7.32e-102
Identity = 148/170 (87.06%), Postives = 155/170 (91.18%), Query Frame = 0


Query: 1   MESCARILSPTHFPSVFPLPNLNRRNFNPVWPRKPEASK--SLRLHCHKMYVPGFGEASP 60
           MES AR+LSPT FPS+FPLPNLNR    P+WP KP+ASK   L+L CHKMYVPGFGEASP
Sbjct: 1   MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASP 60

Query: 61  EAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSR 120
           EAKAAKNLHNFFTYVAVRIV AQLESYNPEAH ELMEFLDRHSLNDGDKFL++LMRESSR
Sbjct: 61  EAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLDRHSLNDGDKFLASLMRESSR 120

Query: 121 HKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSP 168
           HKSLALRILEVRSAYCKNDFEWDNLKRLASKM  ESNTRLMREYVTETSP
Sbjct: 121 HKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSP 170

[Close]

BLAST of Cp4.1LG19g07850 vs. TAIR 10
Match: AT4G04330.1 (Chaperonin-like RbcX protein )

HSP 1 Score: 204.5 bits (519), Expect = 6.7e-53
Identity = 105/150 (70.00%), Postives = 121/150 (80.67%), Query Frame = 0


Query: 28  NPVWPRKPEAS----------KSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRI 87
           NP + ++P  S          K  R+  +KMYVPGFGEASPEAKAAK+LH+FFTYVAVRI
Sbjct: 17  NPKFGKRPLVSYPLMQSSRKCKQTRICSNKMYVPGFGEASPEAKAAKHLHDFFTYVAVRI 76

Query: 88  VTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKND 147
           V+AQLESYNPEA+ EL EFLD +S++DGDKF + LMR SSRH +LALRILEVRSAYCKND
Sbjct: 77  VSAQLESYNPEAYMELREFLDTNSVSDGDKFCATLMRRSSRHMNLALRILEVRSAYCKND 136

Query: 148 FEWDNLKRLASKMVGESNTRLMREYVTETS 168
           FEWDN+KRLA K V +SNTRLMREYV ETS
Sbjct: 137 FEWDNMKRLAFKNVDDSNTRLMREYVLETS 166

[Close]

BLAST of Cp4.1LG19g07850 vs. TAIR 10
Match: AT5G19855.1 (Chaperonin-like RbcX protein )

HSP 1 Score: 41.6 bits (96), Expect = 7.5e-04
Identity = 35/104 (33.65%), Postives = 51/104 (49.04%), Query Frame = 0


Query: 64  KNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLA 123
           K + N+FTY AVR V  QL   NP  +      +  +   DG +FL  L +ES   + LA
Sbjct: 94  KQIVNYFTYKAVRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKES---QELA 153

Query: 124 LRILEVR-SAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTET 167
            R++  R   Y K   + D+ K    + + + N  LMRE + ET
Sbjct: 154 ERVMITRLHLYGKWIKKCDHGK--IYQEISDENLALMRERLMET 192

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g07850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94AU9	9.5e-52	70.00	Chaperonin-like RBCX protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q44177	5.1e-05	33.68	RuBisCO chaperone RbcX OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6...	[more]
Q55670	9.6e-04	31.53	RuBisCO chaperone RbcX OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111170...	[more]

BLAST of Cp4.1LG19g07850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023518339.1	6.13e-123	100.00	chaperonin-like RBCX protein 1, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_023003335.1	1.69e-120	97.67	chaperonin-like RBCX protein 1, chloroplastic [Cucurbita maxima]	[more]
XP_022926897.1	5.66e-119	97.09	chaperonin-like RBCX protein 1, chloroplastic [Cucurbita moschata]	[more]
KAG6594678.1	6.61e-118	96.51	Chaperonin-like RBCX protein 1, chloroplastic, partial [Cucurbita argyrosperma s...	[more]
KAG7026647.1	4.90e-112	84.26	Chaperonin-like RBCX protein 1, chloroplastic [Cucurbita argyrosperma subsp. arg...	[more]

BLAST of Cp4.1LG19g07850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KRH1	8.18e-121	97.67	chaperonin-like RBCX protein 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1EFL9	2.74e-119	97.09	chaperonin-like RBCX protein 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A5D3CNU4	6.83e-102	86.71	Chaperonin-like RBCX protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3B054	6.83e-102	86.71	uncharacterized protein LOC103484635 OS=Cucumis melo OX=3656 GN=LOC103484635 PE=...	[more]
A0A6J1BTL5	7.32e-102	87.06	chaperonin-like RBCX protein 1, chloroplastic OS=Momordica charantia OX=3673 GN=...	[more]

BLAST of Cp4.1LG19g07850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G04330.1	6.7e-53	70.00	Chaperonin-like RbcX protein	[more]
AT5G19855.1	7.5e-04	33.65	Chaperonin-like RbcX protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038052	Chaperonin-like RbcX superfamily	GENE3D	1.10.1200.210		coord: 48..172 e-value: 3.2E-54 score: 184.5
IPR038052	Chaperonin-like RbcX superfamily	SUPERFAMILY	158615	RbcX-like	coord: 53..167
IPR003435	Chaperonin-like RbcX	PFAM	PF02341	RcbX	coord: 61..166 e-value: 2.7E-33 score: 114.5
IPR003435	Chaperonin-like RbcX	PANTHER	PTHR33791	FAMILY NOT NAMED	coord: 10..167
None	No IPR available	PANTHER	PTHR33791:SF12	CHAPERONIN-LIKE RBCX PROTEIN 1, CHLOROPLASTIC	coord: 10..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG19g07850.1	Cp4.1LG19g07850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:0061077	chaperone-mediated protein folding
biological_process	GO:0006270	DNA replication initiation
biological_process	GO:0033314	mitotic DNA replication checkpoint signaling
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009409	response to cold
biological_process	GO:0009651	response to salt stress
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0110102	ribulose bisphosphate carboxylase complex assembly
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0005664	nuclear origin of replication recognition complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003688	DNA replication origin binding
molecular_function	GO:0044183	protein folding chaperone