Cp4.1LG19g07500 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG19g07500
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	ribosomal RNA-processing protein 17
Location	Cp4.1LG19: 6984375 .. 6987849 (+)
RNA-Seq Expression	Cp4.1LG19g07500
Synteny	Cp4.1LG19g07500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGCCGGGCATAATCAATTTCAATCTCCTTTGAGATATGAAGCCCACCCAATTAGCCGCCGCGCTTGGTATTAGGTGTCCGCCGCCGCGCGAACCGAATTTAATGTGAAGCAGAGAGTGTTACAGGGCGCTACGATGGTGAAGAACGAAGCGGAGGAAGGCGGGGCGCTCACACAGCCTCATGCTCGACACATAAAGAAGAAAGCTCTAAAGAACAAAGCTCTTTCTGTTTCTTTCAATGAGAAAGACTTGAGGTTTTCCTTCAAACTCAGCACGAACTTGATTGATTGGGAATTTTATTTGATATCGATTTCTATCTATTTTCTTGTTGGTTTTTTTTTTTTTAATTTTTTTTTATTTTTTGAATTTTTCTTAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCGGAAAAGCAACAAGAGGAAGCTAAGCGGCGGAAGCGCATCGAAGAACGCAAAAAGGTTTGACATACGTTTCTATTTCTGAAAGGGAACTGCTGTAAACAGATAACTATTTTGTCCGTAGGATGATGACATTTTAGAGTTTACAGGGAAAGAAATAGCTACAATGATAGTTCCGGAACTGAAAATTTTCTGTGAACAATACTACTTTTCTAGCTCAATGAACTTAGGATAGCGCATGAATAAATCTTTTCTGGTACATTGTTGATTTCCCAACAGAACTGCAAAACCATTGGGATTCTCAGTGGCTAGAAAGAGAACCAAACACACCACACCATTAGTCTCACGAAAGGTTAAATATTTCCTTCGGACTCTGGAGATGAGGCTGGTTGTGAGCTAAAGGTAAAGGTCCCAATGTTGTTTTTCCACCTTGGATTTGTCCAAGCTTATATGAATTTATTCAATCCTTAGTTTCATAGGTCACAATGGGTATTTAGGAGACTTGCACTTCTCTTTCTTTCACTGAGCTACGGGCAATGATTTTTGAACTTAGTTGTACATTCATCAGGATAGAAAAGTTAGAAGGCATGTTTATGCATTTTTTTATAAATTATAATTTGAACTTTCTTGGAGAACAATAAAAGAATGTATAAGTGCTTGCAATGCTGCAAGAAGGAGTTCTAATACAAAAAAAATGGGACCTAGCTACACCGAGTCTTGAAGTGTTGAACCTAAAAAGAATAGCCTCCCATAACTCTCTCAAATCTCTATAACAACTCTAAAAAGTCTACCATTCCTCTCAAGCCATATCCCTCAAAGAATGGCAACAAGACAGTCTACCCAAGAATTTTGCTCTTCTGAAGTGAGGAAACAACAAAACATCCCACATCAAACCTGCTATGAAAATCTTGGGATTGAGATTTGATCTAATAACTTTGTTGAAGAACAAGACCTTTAGATCAAAGTATCCCCGAAACCCCAAAAACGATAAGAATCAATCCAAGGGAAAGTTTTGGAATGAATTACCTTGATGATCAAGATTAAGAGTAAAGAAAACTCGTGATTCGAATCACTCTACAAGATAGCATCATGAAGTTTATGTGGCATGATTTCACTTTATTTTGTATCAAAACCCTACACTCCCTGCATGTTTCTTCTATTAAGCTTGCGCGCAAGGATGTACAGTTTATCTTAAGAAGTAGAACTATCAGATCATTCCCTCCGACAAAAATTTCAATAGCTGTACGATTTTGACCATTCTACTGCCGCAACTAATACAACTGGTGGTAAGGGAGGGTTAGGAAGGTGATTTAAGTCAGTTGTGAGAGATTGCCTCTAGCTTTTTTTGTTGATTTTAATTGTGAACCTCCCTGTAATGATCGTTCAACTAAAATGCTACTAATTAGTCGTCATTTATGCATTGTATTTTATGAATATTTTTATTGCATAAGTTGTGTAAAATATTATTGACAGAGGAAACAAGAAAGAGAACAGCCTTTTTGGTGCATATGTCCTTTTCTTCTATATCATCTGGGTTACATTTTCTGAAAGTCATAAATTATCTTGCAGAGAAAAATAGAAAAAGAACTGGTGCTACATGGCGGTGTTCTACCAGCTGACCGGCCAGTTGATGAGCAGAATGATGATCTCAAGGACGGGGATGAGGATGAGGAAGAGAAGCCATTGGCACCAATTTCTGGTATTTTTCTAGGAATTGCACATTAAACTATCAAAAGCATGTGATAATCCATTTGCACCAGTTTGCTTAGAACACAGTTGTGTTCAATTAATCAAAATGACAGATAATAGTTACAAGTTCTTTCCTAATACAAGGGGCCAAAGACGTGTCGATCTTAAAAAATCAGATCAGATATTATTCTTTTCACAGGGAAGCTAAAAGTCGGGTTATATATGAAAAATAACTTGGAAGTTGATAACATTGATAATGATATGCATTCATTGAGAAACTCTGAATCTTGGAAGAGGCTTCCAATAATCAAACACTGGAAGTGTCATCTATGTTATAGAGATACATGTCGTTTTATTTTGATCCAAACGTGCTTTTGGTCCTCTCTGTAGAGACAACAACGTATGACAGTGGAAACATCAAAGTCACTGTGACAACAAGTGAGGTACGTCGTGACGAAGAAATCGATCCCATTGACAAGCCACAGGCATCAACATCCCAACTTCTTGCAAAGGATAAGAAGCACAGCCTGCCAGTTACCAAAAAGAAGCCATTCAAGAAAGTTGCAAGAAAGAAGTCAAGGTCAAAGTCCCGTAGTAAAACAGACAAAAAGAAAGGAAGGAAAAAGAAATAGGTAATTATACTAAAAGCTTTATGCTCACTCTTTTCTAAATCTGCAATGTAATGACGTGTATGTTATCTCTTGAGAATAGGGTGTGATCTTGAGAATGGGCTGTAGGGGGTTTGAGGGTTTTGTATTACTTTGTAAAAGGTTGGCCATTTTGCAAACTGAAAGTGCAATTTTCTTTTTTATGAGAAGCTGAAATGATTCTCTCATTATTCCAAGATGACAAACATTAGATTGCAACTCATCTAAGAATCAAAAAATTCTTTCATTACATCATTGAATCTTATCAATGAGATATGAGCAAGAGAAAACCTTGAGTTGATGGACCTTCCAACTGTCCAGACGGAGATCTTGGCATAGATACAAACGTATGGTCATCTGCTTGCACAACCATCATACAGGAACCAAAAGAGCCTTCAGAAGTAGAAGCAATTTCATTTCATAACAAAACTATCTGTCCATAAAGTTCACAACCAAATAGGTCCACTAACTAATTAATCACAGGATTTCTGTCAATCTTTTACTTTCCATTTCCACAATTAGTATGCAGAGAAAGAAAAAAAAATTGCTGGACCTGAACTTTTACGAAGAACTTTTACGAAGACAGTAAGATGTTGTAAGCTGTCTTTGTGTCTCTTTGTTTAATTTCTATTTGAAAGATATAAGTCCGTGAACTTCCACGGATAACTTTGATCCGCGGAGACAGCTTCAGAGGATTCCTACATGGGGTTTAAAAGC

mRNA sequence

TGGGCCGGGCATAATCAATTTCAATCTCCTTTGAGATATGAAGCCCACCCAATTAGCCGCCGCGCTTGGTATTAGGTGTCCGCCGCCGCGCGAACCGAATTTAATGTGAAGCAGAGAGTGTTACAGGGCGCTACGATGGTGAAGAACGAAGCGGAGGAAGGCGGGGCGCTCACACAGCCTCATGCTCGACACATAAAGAAGAAAGCTCTAAAGAACAAAGCTCTTTCTGTTTCTTTCAATGAGAAAGACTTGAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCGGAAAAGCAACAAGAGGAAGCTAAGCGGCGGAAGCGCATCGAAGAACGCAAAAAGAGAAAAATAGAAAAAGAACTGGTGCTACATGGCGGTGTTCTACCAGCTGACCGGCCAGTTGATGAGCAGAATGATGATCTCAAGGACGGGGATGAGGATGAGGAAGAGAAGCCATTGGCACCAATTTCTGAGACAACAACGTATGACAGTGGAAACATCAAAGTCACTGTGACAACAAGTGAGGTACGTCGTGACGAAGAAATCGATCCCATTGACAAGCCACAGGCATCAACATCCCAACTTCTTGCAAAGGATAAGAAGCACAGCCTGCCAGTTACCAAAAAGAAGCCATTCAAGAAAGTTGCAAGAAAGAAGTCAAGGTCAAAGTCCCGTAGTAAAACAGACAAAAAGAAAGGAAGGAAAAAGAAATAGGTAATTATACTAAAAGCTTTATGCTCACTCTTTTCTAAATCTGCAATGTAATGACGTGTATGTTATCTCTTGAGAATAGGGTGTGATCTTGAGAATGGGCTGTAGGGGGTTTGAGGGTTTTGTATTACTTTGTAAAAGGTTGGCCATTTTGCAAACTGAAAGTGCAATTTTCTTTTTTATGAGAAGCTGAAATGATTCTCTCATTATTCCAAGATGACAAACATTAGATTGCAACTCATCTAAGAATCAAAAAATTCTTTCATTACATCATTGAATCTTATCAATGAGATATGAGCAAGAGAAAACCTTGAGTTGATGGACCTTCCAACTGTCCAGACGGAGATCTTGGCATAGATACAAACGTATGGTCATCTGCTTGCACAACCATCATACAGGAACCAAAAGAGCCTTCAGAAGTAGAAGCAATTTCATTTCATAACAAAACTATCTGTCCATAAAGTTCACAACCAAATAGGTCCACTAACTAATTAATCACAGGATTTCTGTCAATCTTTTACTTTCCATTTCCACAATTAGTATGCAGAGAAAGAAAAAAAAATTGCTGGACCTGAACTTTTACGAAGAACTTTTACGAAGACAGTAAGATGTTGTAAGCTGTCTTTGTGTCTCTTTGTTTAATTTCTATTTGAAAGATATAAGTCCGTGAACTTCCACGGATAACTTTGATCCGCGGAGACAGCTTCAGAGGATTCCTACATGGGGTTTAAAAGC

Coding sequence (CDS)

ATGGTGAAGAACGAAGCGGAGGAAGGCGGGGCGCTCACACAGCCTCATGCTCGACACATAAAGAAGAAAGCTCTAAAGAACAAAGCTCTTTCTGTTTCTTTCAATGAGAAAGACTTGAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCGGAAAAGCAACAAGAGGAAGCTAAGCGGCGGAAGCGCATCGAAGAACGCAAAAAGAGAAAAATAGAAAAAGAACTGGTGCTACATGGCGGTGTTCTACCAGCTGACCGGCCAGTTGATGAGCAGAATGATGATCTCAAGGACGGGGATGAGGATGAGGAAGAGAAGCCATTGGCACCAATTTCTGAGACAACAACGTATGACAGTGGAAACATCAAAGTCACTGTGACAACAAGTGAGGTACGTCGTGACGAAGAAATCGATCCCATTGACAAGCCACAGGCATCAACATCCCAACTTCTTGCAAAGGATAAGAAGCACAGCCTGCCAGTTACCAAAAAGAAGCCATTCAAGAAAGTTGCAAGAAAGAAGTCAAGGTCAAAGTCCCGTAGTAAAACAGACAAAAAGAAAGGAAGGAAAAAGAAATAG

Protein sequence

MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKKSRSKSRSKTDKKKGRKKK

Homology

[Close]

BLAST of Cp4.1LG19g07500 vs. NCBI nr
Match: XP_023517913.1 (ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 353 bits (906), Expect = 4.42e-122
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120
           QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET
Sbjct: 61  QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120

Query: 121 TTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKK 180
           TTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKK
Sbjct: 121 TTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKK 180

Query: 181 SRSKSRSKTDKKKGRKKK 198
           SRSKSRSKTDKKKGRKKK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of Cp4.1LG19g07500 vs. NCBI nr
Match: KAG7026594.1 (hypothetical protein SDJN02_10596, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 352 bits (903), Expect = 1.27e-121
Identity = 197/198 (99.49%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120
           QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEE+PLAPISET
Sbjct: 61  QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEERPLAPISET 120

Query: 121 TTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKK 180
           TTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKK
Sbjct: 121 TTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKK 180

Query: 181 SRSKSRSKTDKKKGRKKK 198
           SRSKSRSKTDKKKGRKKK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of Cp4.1LG19g07500 vs. NCBI nr
Match: KAG6594625.1 (hypothetical protein SDJN03_11178, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 350 bits (898), Expect = 7.33e-121
Identity = 196/198 (98.99%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120
           QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEE+PLAPISET
Sbjct: 61  QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEERPLAPISET 120

Query: 121 TTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKK 180
           TTYDSGNIKVTVTTSEVRRDEEI+PIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKK
Sbjct: 121 TTYDSGNIKVTVTTSEVRRDEEINPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKK 180

Query: 181 SRSKSRSKTDKKKGRKKK 198
           SRSKSRSKTDKKKGRKKK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of Cp4.1LG19g07500 vs. NCBI nr
Match: XP_022926799.1 (ribosomal RNA-processing protein 17 [Cucurbita moschata])

HSP 1 Score: 349 bits (896), Expect = 1.48e-120
Identity = 195/198 (98.48%), Postives = 197/198 (99.49%), Query Frame = 0


Query: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120
           QEEAKRRKRIEERKKRKIEK+LVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET
Sbjct: 61  QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120

Query: 121 TTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKK 180
           T YDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLP+TKKKPFKKVARKK
Sbjct: 121 TMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK 180

Query: 181 SRSKSRSKTDKKKGRKKK 198
           SRSKSRSKTDKKKGRKKK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of Cp4.1LG19g07500 vs. NCBI nr
Match: XP_023003425.1 (ribosomal RNA-processing protein 17 [Cucurbita maxima])

HSP 1 Score: 344 bits (882), Expect = 2.01e-118
Identity = 191/198 (96.46%), Postives = 197/198 (99.49%), Query Frame = 0


Query: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKNEA EGGALTQP++RH+KKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAAEGGALTQPYSRHVKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120
           QEEAKRRKRIEERKKRKIEK+LVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET
Sbjct: 61  QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120

Query: 121 TTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKK 180
           TTYDSGNIKVTVTTSEVRR+EEIDPIDKPQASTSQLLAKDKKHSLP+TKKKPFKKVARKK
Sbjct: 121 TTYDSGNIKVTVTTSEVRREEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK 180

Query: 181 SRSKSRSKTDKKKGRKKK 198
           SRSKSRSKTDKKKGRKKK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of Cp4.1LG19g07500 vs. ExPASy TrEMBL
Match: A0A6J1EG67 (ribosomal RNA-processing protein 17 OS=Cucurbita moschata OX=3662 GN=LOC111433808 PE=3 SV=1)

HSP 1 Score: 349 bits (896), Expect = 7.16e-121
Identity = 195/198 (98.48%), Postives = 197/198 (99.49%), Query Frame = 0


Query: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120
           QEEAKRRKRIEERKKRKIEK+LVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET
Sbjct: 61  QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120

Query: 121 TTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKK 180
           T YDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLP+TKKKPFKKVARKK
Sbjct: 121 TMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK 180

Query: 181 SRSKSRSKTDKKKGRKKK 198
           SRSKSRSKTDKKKGRKKK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of Cp4.1LG19g07500 vs. ExPASy TrEMBL
Match: A0A6J1KRQ7 (ribosomal RNA-processing protein 17 OS=Cucurbita maxima OX=3661 GN=LOC111497040 PE=3 SV=1)

HSP 1 Score: 344 bits (882), Expect = 9.74e-119
Identity = 191/198 (96.46%), Postives = 197/198 (99.49%), Query Frame = 0


Query: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKNEA EGGALTQP++RH+KKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAAEGGALTQPYSRHVKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120
           QEEAKRRKRIEERKKRKIEK+LVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET
Sbjct: 61  QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120

Query: 121 TTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKK 180
           TTYDSGNIKVTVTTSEVRR+EEIDPIDKPQASTSQLLAKDKKHSLP+TKKKPFKKVARKK
Sbjct: 121 TTYDSGNIKVTVTTSEVRREEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK 180

Query: 181 SRSKSRSKTDKKKGRKKK 198
           SRSKSRSKTDKKKGRKKK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of Cp4.1LG19g07500 vs. ExPASy TrEMBL
Match: A0A6J1CL67 (ribosomal RNA-processing protein 17-like OS=Momordica charantia OX=3673 GN=LOC111012309 PE=3 SV=1)

HSP 1 Score: 281 bits (719), Expect = 5.73e-94
Identity = 162/198 (81.82%), Postives = 176/198 (88.89%), Query Frame = 0


Query: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKN+ +EGG L QP  RHIKK+ALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120
           QEEAKRRKRIE RKKRK EKELVL+GG+LPADRPVDEQNDD     E+EEEKP APISET
Sbjct: 61  QEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDDH----EEEEEKPFAPISET 120

Query: 121 TTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKK 180
           TTYDSGNIKVTV TSEV RD EI PIDK Q +T+QL+AKDKKH+LP+TKKKPFKKVA++K
Sbjct: 121 TTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQK 180

Query: 181 SRSKSRSKTDKKKGRKKK 198
           SR K RSK DKKKGRKKK
Sbjct: 181 SRPKPRSKRDKKKGRKKK 194

[Close]

BLAST of Cp4.1LG19g07500 vs. ExPASy TrEMBL
Match: A0A1S3C1A3 (ribosomal RNA-processing protein 17 OS=Cucumis melo OX=3656 GN=LOC103495882 PE=3 SV=1)

HSP 1 Score: 273 bits (699), Expect = 6.35e-91
Identity = 156/198 (78.79%), Postives = 174/198 (87.88%), Query Frame = 0


Query: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKN+ EEGG L QPHARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120
           +EEA RR RIE RKKRK+EK+LVL+GGVLPADR VD+QNDD     EDEEE+PLAP SE 
Sbjct: 61  KEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQNDDQ----EDEEEEPLAPFSEA 120

Query: 121 TTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKK 180
            TYD+GN+KVTVTTSEV R+ EIDPIDKPQ + +QLL KDKKH+LP+TKKK FKKVA+++
Sbjct: 121 RTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQR 180

Query: 181 SRSKSRSKTDKKKGRKKK 198
           SR K RSK DKKKGRKKK
Sbjct: 181 SRPKLRSKRDKKKGRKKK 194

[Close]

BLAST of Cp4.1LG19g07500 vs. ExPASy TrEMBL
Match: A0A0A0KYB4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G414400 PE=3 SV=1)

HSP 1 Score: 271 bits (692), Expect = 7.91e-90
Identity = 155/200 (77.50%), Postives = 176/200 (88.00%), Query Frame = 0


Query: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVKN+ EEGG L QPHARHIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120
           +EEA RR RIE RKKRK+EK+LVLHGGVLPADR VD+QNDD  +    EEE+PLAP+SE 
Sbjct: 61  KEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQNDDQGN----EEEEPLAPLSEA 120

Query: 121 TTYDSGNIKVTVTTSEVRRDEEIDPIDKPQAST--SQLLAKDKKHSLPVTKKKPFKKVAR 180
           TTYD+GN+KVTVTTSEV R++EIDPIDKPQ +T  +QLL KDKKH+LP+TKKK FKKVA+
Sbjct: 121 TTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAK 180

Query: 181 KKSRSKSRSKTDKKKGRKKK 198
           ++ R K RSK DKKKGRKKK
Sbjct: 181 QRGRPKLRSKRDKKKGRKKK 196

[Close]

BLAST of Cp4.1LG19g07500 vs. TAIR 10
Match: AT1G11240.1 (CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink). )

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-32
Identity = 104/191 (54.45%), Postives = 134/191 (70.16%), Query Frame = 0


Query: 7   EEGGALTQP-HARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAK 66
           EE G+L  P  ARHI K+A KNK+L+VSF+EKDL+D+VTGFHKRKKKRRKEA+KQQEEA 
Sbjct: 8   EEAGSLATPTSARHIGKRARKNKSLTVSFDEKDLKDFVTGFHKRKKKRRKEAQKQQEEAF 67

Query: 67  RRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISETTTYDS 126
           RRKRIE RK RK+E+ +V   G    D   +++ D      EDEE +P A  S TT YD+
Sbjct: 68  RRKRIEARKNRKLEELMVAGNGEDNEDGEAEDEVD-----AEDEEAEPDASTSATTMYDT 127

Query: 127 GNIKVTVTTSEVRRDEEIDPI--DKPQASTSQLLAK-DKKHSLPVTKKKPFKKVARKKSR 186
           G +KVTVTTSE+ R+EE +PI  +K Q++ S   AK   K  +PV K KP K+ +R++S 
Sbjct: 128 GELKVTVTTSEISREEE-EPIRKEKTQSTESGSTAKASTKQPVPVRKTKPMKQ-SRRRST 187

Query: 187 SKSRSKTDKKK 194
           +K+  K DKKK
Sbjct: 188 TKTMKKRDKKK 191

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g07500 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG19g07500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023517913.1	4.42e-122	100.00	ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo]	[more]
KAG7026594.1	1.27e-121	99.49	hypothetical protein SDJN02_10596, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6594625.1	7.33e-121	98.99	hypothetical protein SDJN03_11178, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022926799.1	1.48e-120	98.48	ribosomal RNA-processing protein 17 [Cucurbita moschata]	[more]
XP_023003425.1	2.01e-118	96.46	ribosomal RNA-processing protein 17 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG19g07500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EG67	7.16e-121	98.48	ribosomal RNA-processing protein 17 OS=Cucurbita moschata OX=3662 GN=LOC11143380...	[more]
A0A6J1KRQ7	9.74e-119	96.46	ribosomal RNA-processing protein 17 OS=Cucurbita maxima OX=3661 GN=LOC111497040 ...	[more]
A0A6J1CL67	5.73e-94	81.82	ribosomal RNA-processing protein 17-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A1S3C1A3	6.35e-91	78.79	ribosomal RNA-processing protein 17 OS=Cucumis melo OX=3656 GN=LOC103495882 PE=3...	[more]
A0A0A0KYB4	7.91e-90	77.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G414400 PE=3 SV=1	[more]

BLAST of Cp4.1LG19g07500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11240.1	1.2e-32	54.45	CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 47..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..83
IPR019186	Nucleolar protein 12	PFAM	PF09805	Nop25	coord: 21..125 e-value: 3.5E-17 score: 63.2
IPR019186	Nucleolar protein 12	PANTHER	PTHR14577	NUCLEOLAR PROTEIN 12	coord: 11..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG19g07500.1	Cp4.1LG19g07500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003723	RNA binding