Cp4.1LG19g06360 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG19g06360
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG19: 7477602 .. 7481131 (+)
RNA-Seq Expression	Cp4.1LG19g06360
Synteny	Cp4.1LG19g06360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAAACGTTGGCGCCAAATTACCAACTTTCAAAATTTTGCTATTGTCATTCCAATTCTCCCTCTCTGTTCAACGCATTGGCTGTTCTTTGATTTCGTCGAGCTCTTATATTTGTTTGTTTGGAACCAAAAGGTTCTCTGTTTCGACCACTCCCTCTTACAATTATTGGCTTTCTCTTCATCTAAGAAACGGAAGAATCAATGAAGCCCGATCATTATTTGATCACATATCTTCTCCTGGTGTTAACTTATACACCATGATGATTGCGGGTTATGCAGAAAAAGGTAGGCTTGAGGATGCCCTGAAACTGTTCTATGAAATGCCTGTGAAGGATCTGGTTTCTTGGAATTCTATGCTCAAAGGGTGTCTCAAATGTGGGGATTTAAGTATGGCCTGGAACGTGTTTGACAAAATGCCGCAAAGGAATGTCATTTCTTGGACGACCATAATCGATGGGCTGCTGGAGTTTGGGAGAGTTGAGGTTGCTGAGCGCTTTTTCTGGGAGATGCCCACTAGGGATGTTGCTGCCTGGAATTCCATGGTTCATGGATATTTTAGTAATGGTAGAGTTGAAGATGCCGTTGAGTTGTTTGAGAAAATGCCTTTCCGGAATGTGATTTCGTGGACTTCTGTGATTGGTGGGCTTGACCAGAATGGAAGGAGTTACGAAGCTCTACTTGTTTTCCAGAAAATGTTGGCTTCCTTTATCAAACCCACTTCGAGCACGTTGGCCTGTGCATTGACAGCTTGTGCAAACATACGTACTTTCTTCATAGGTGTACAGATTCATGGTCTAATTGTTAAGACTGGTCACTGCTTTGATGAATACATAGCTGCTTCCCTTATAACATTTTATGCAAACTGCAAGCTAATACAGAATGCTTTCGACATTTTTAACGACGATTTACGGAGAAATGTTGCGGTTTGGACGGCTCTTCTAACGGGATATGGATTGAACTGTAAGCACGACGATGCGTTACGGGTTTTCAAGGGTATGATGAGAATGTGTGTGCTTCCTAATCAATCTTCTCTGACTAGTGCTCTAAATTCATGTTGTGGATTAGAGGCTGTTGATAGAGGCAGGGAAGTTCATAGTGTAGCTTACAAGCTAGGCTTGGAAAATGATATCTTTGTCGGTAATTCTCTCGTGGTTATGTATACTAAATGTGGACAAATTCGTGATGGGGTTGTTGTCTTCACAGGAATGTCTAGAAAGAATGTTGTGTCCTGGAACTCCATCATTGTTGGATGTGCACAACATGGTTTTGGGATGTGGGCTTTGACTCTCTTCGCTCAAATGATTCGTTCAAGGGTGGATCCAGACGAGATTACGCTCATAGGATTACTTTCAGCTTGCAGCCATTCTGGATTGTTAACAAAAGGTAGAAGCTTTTTCAAGCATTTTGGCAAAAACTTGTGTATTGAGATGACAAATGAGCACTATGCTTCTATGGTTGATCTATTAGGCCGATATGGCGAATTGGACGAAGCCGAAGCGCTGATTCATACCATGCCTATCAAAGCTAACTACACGGTGTGGCTTGCACTGCTCAGCAGTTGCTCCAAACACTCTAATGTGGATGTAGCTGAAAGGGCAGCAAAATGTGTGTTGGAACTACAACCAAGCTGTAGTGCTGCTTATACATTACTCTCCAATCTATACGCTTCTAATGGAAAATGGACTGAAGTTTCCAAAATAAGGAAGAAGATGAAAGATGAAGGGATTTTAAAGCAACCTGGAAGTAGCTGGATTACAGTTAAGGGGATCAGGCATGATTTTCTTTCGGGCGATCGGTCGCATCCATCGAGCCGAAAAATATACCAAAAACTAGAATGGCTAAGAGGGAAGTTGAAGGAATTGGGTTATGTACCTGATCCGAAGTTCTCCTTGCATGATGTTGAGTCAGAACAAAAGGAAGAGATGCTGTCAAGTCATAGTGAGAGGCTTGCTATTGGGTTTGGATTAATCAGTACAGTTGAGGGTAGCACCATAACAGTAATGAAAAACCTCCGCATTTGTGGCGATTGTCACAATGCCATCAAGCTTATAGCGAAAGTCGTCGGTCGGGAAATCGTCGTTAGAGACTCTAGCCGCTTTCATCACTTTCGTAGCGGAGCCTGTTCTTGTGGAGATTACTGGTAGTAGCTGTGGTGGTTCAAAATGTGTTCAAATAATGGATTGAACTCCATGATACACCAAAAATCATGCCTACAGGAAGAGGAAAGAAACAATGTTAGCAGCTATAAACCAGTTTGAGAGTACATCTTCATGAAGAACAGGAAGCCAAATTAAACTACCAATATCAAGTTCCTGTGAGAATTTTGGAATTTTGGAATTTTGTGTAGCAAGGCGAGTGGCTAGGTCATGTTCGTTTAAATTCTTGGTTGAATCATACAAAACCCTAATTAACTTAAAGAGTATGTCTAATCACCACTTGGTTAGGTCAATCTCAAATTTTTGGGATAGAAAATATAATTTAATGAAAAAAATTAAGTTCAAATCCACTAACTAAAAAGTAAAATTTACCCGTAAAAATTTAGGCATGGTTTTTAAAGCCCTATATATAGTTGGGTAAGAGATGAATCTTCATGAACTTGATCCCTAGATGAATCTTGAAGATAGTTAGTGGAGATGAATCCAAAGAAGTGAACGGACTCAGAAAATTCAGTTCTGAATCAATTCTTGAGGTTGATTGTTCAAGCCACCATCGGCGATCTTCAATCTTGTACCAGGAAATTCGCAAGATGACGATTACAGAGAGAGAAGAAGACAGAGAAACAGTTACGAACGCGACAATTGAACAAATTAAGGAGAAAGAAGAAGAACAAGAAGAAGAAATTGACCAGACAAAGAAGGAAGAAGATGATGATGAAGAATTAAACCTGGATGCTATGCTGAGTGAGATTGTCAAAGATTCAGAATCAGGGAGTTCAATGAAAGAAATGGAAGAACATGAAGAACAAGTAAGTAAAAGAACAAGAATCGCAGAATCAGGGGAAGCGGAGGTAGCGGAGGAAGCGGAAACAGAACAACTTCGTATTGGATCCGATCCGGCAGTGGATCCTCTGGACATAACCATGGAAATCGTATCGAAATACCACGACTTCGTTGACTTCGCACTTGAGATTTTGGAAGAAGAACAGAAATACGAAGAAGAACAGAAATACGGAGAAGAACAGAAAATCGAAGAGGAAATGAAAACACAGTTATGGAGCGAGGTTTTTGAAAGAGGAAAGCAGCTGGTTGAGAGCCTGAAGCAAAGATTGCAGAGACTGCCTTACGAACTGAATCGCATGAAAAACGATAAGAATTTGCGGGAGAAATACACCACCAGAAAATTTTGTGTTCAACATATCTTACCTCAACTGCGACATTTAAATTCACGAGTCGATACATGTCCTCATATCCGCATTCTTTCAGACGATAACTCTACAGTGCGTGTGTTGCCATTGTACTTCGATGAGCTTCACGATTGCAAGATAGACCTGTTTGCGATGATGGAGCTAATCAGAGATCTGAAGGAATGA

mRNA sequence

ATGCGAAACTTTGGGAGAGTTGAGGTTGCTGAGCGCTTTTTCTGGGAGATGCCCACTAGGGATGTTGCTGCCTGGAATTCCATGGTTCATGGATATTTTAGTAATGGTAGAGTTGAAGATGCCGTTGAGTTGTTTGAGAAAATGCCTTTCCGGAATGTGATTTCGTGGACTTCTGTGATTGGTGGGCTTGACCAGAATGGAAGGAGTTACGAAGCTCTACTTGTTTTCCAGAAAATGTTGGCTTCCTTTATCAAACCCACTTCGAGCACGTTGGCCTGTGCATTGACAGCTTGTGCAAACATACGTACTTTCTTCATAGGTGTACAGATTCATGGTCTAATTGTTAAGACTGGTCACTGCTTTGATGAATACATAGCTGCTTCCCTTATAACATTTTATGCAAACTGCAAGCTAATACAGAATGCTTTCGACATTTTTAACGACGATTTACGGAGAAATGTTGCGGTTTGGACGGCTCTTCTAACGGGATATGGATTGAACTGTAAGCACGACGATGCGTTACGGGTTTTCAAGGGTATGATGAGAATGTGTGTGCTTCCTAATCAATCTTCTCTGACTAGTGCTCTAAATTCATGTTGTGGATTAGAGGCTATAGTTAGTGGAGATGAATCCAAAGAAGTGAACGGACTCAGAAAATTCAGTTCTGAATCAATTCTTGAGGTTGATTGTTCAAGCCACCATCGGCGATCTTCAATCTTGTACCAGGAAATTCGCAAGATGACGATTACAGAGAGAGAAGAAGACAGAGAAACAGTTACGAACGCGACAATTGAACAAATTAAGGAGAAAGAAGAAGAACAAGAAGAAGAAATTGACCAGACAAAGAAGGAAGAAGATGATGATGAAGAATTAAACCTGGATGCTATGCTGAGTGAGATTGTCAAAGATTCAGAATCAGGGAGTTCAATGAAAGAAATGGAAGAACATGAAGAACAAGTAAGTAAAAGAACAAGAATCGCAGAATCAGGGGAAGCGGAGGTAGCGGAGGAAGCGGAAACAGAACAACTTCGTATTGGATCCGATCCGGCAGTGGATCCTCTGGACATAACCATGGAAATCGTATCGAAATACCACGACTTCGTTGACTTCGCACTTGAGATTTTGGAAGAAGAACAGAAATACGAAGAAGAACAGAAATACGGAGAAGAACAGAAAATCGAAGAGGAAATGAAAACACAGTTATGGAGCGAGGTTTTTGAAAGAGGAAAGCAGCTGGTTGAGAGCCTGAAGCAAAGATTGCAGAGACTGCCTTACGAACTGAATCGCATGAAAAACGATAAGAATTTGCGGGAGAAATACACCACCAGAAAATTTTGTGTTCAACATATCTTACCTCAACTGCGACATTTAAATTCACGAGTCGATACATGTCCTCATATCCGCATTCTTTCAGACGATAACTCTACAGTGCGTGTGTTGCCATTGTACTTCGATGAGCTTCACGATTGCAAGATAGACCTGTTTGCGATGATGGAGCTAATCAGAGATCTGAAGGAATGA

Coding sequence (CDS)

ATGCGAAACTTTGGGAGAGTTGAGGTTGCTGAGCGCTTTTTCTGGGAGATGCCCACTAGGGATGTTGCTGCCTGGAATTCCATGGTTCATGGATATTTTAGTAATGGTAGAGTTGAAGATGCCGTTGAGTTGTTTGAGAAAATGCCTTTCCGGAATGTGATTTCGTGGACTTCTGTGATTGGTGGGCTTGACCAGAATGGAAGGAGTTACGAAGCTCTACTTGTTTTCCAGAAAATGTTGGCTTCCTTTATCAAACCCACTTCGAGCACGTTGGCCTGTGCATTGACAGCTTGTGCAAACATACGTACTTTCTTCATAGGTGTACAGATTCATGGTCTAATTGTTAAGACTGGTCACTGCTTTGATGAATACATAGCTGCTTCCCTTATAACATTTTATGCAAACTGCAAGCTAATACAGAATGCTTTCGACATTTTTAACGACGATTTACGGAGAAATGTTGCGGTTTGGACGGCTCTTCTAACGGGATATGGATTGAACTGTAAGCACGACGATGCGTTACGGGTTTTCAAGGGTATGATGAGAATGTGTGTGCTTCCTAATCAATCTTCTCTGACTAGTGCTCTAAATTCATGTTGTGGATTAGAGGCTATAGTTAGTGGAGATGAATCCAAAGAAGTGAACGGACTCAGAAAATTCAGTTCTGAATCAATTCTTGAGGTTGATTGTTCAAGCCACCATCGGCGATCTTCAATCTTGTACCAGGAAATTCGCAAGATGACGATTACAGAGAGAGAAGAAGACAGAGAAACAGTTACGAACGCGACAATTGAACAAATTAAGGAGAAAGAAGAAGAACAAGAAGAAGAAATTGACCAGACAAAGAAGGAAGAAGATGATGATGAAGAATTAAACCTGGATGCTATGCTGAGTGAGATTGTCAAAGATTCAGAATCAGGGAGTTCAATGAAAGAAATGGAAGAACATGAAGAACAAGTAAGTAAAAGAACAAGAATCGCAGAATCAGGGGAAGCGGAGGTAGCGGAGGAAGCGGAAACAGAACAACTTCGTATTGGATCCGATCCGGCAGTGGATCCTCTGGACATAACCATGGAAATCGTATCGAAATACCACGACTTCGTTGACTTCGCACTTGAGATTTTGGAAGAAGAACAGAAATACGAAGAAGAACAGAAATACGGAGAAGAACAGAAAATCGAAGAGGAAATGAAAACACAGTTATGGAGCGAGGTTTTTGAAAGAGGAAAGCAGCTGGTTGAGAGCCTGAAGCAAAGATTGCAGAGACTGCCTTACGAACTGAATCGCATGAAAAACGATAAGAATTTGCGGGAGAAATACACCACCAGAAAATTTTGTGTTCAACATATCTTACCTCAACTGCGACATTTAAATTCACGAGTCGATACATGTCCTCATATCCGCATTCTTTCAGACGATAACTCTACAGTGCGTGTGTTGCCATTGTACTTCGATGAGCTTCACGATTGCAAGATAGACCTGTTTGCGATGATGGAGCTAATCAGAGATCTGAAGGAATGA

Protein sequence

MRNFGRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGGLDQNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFDEYIAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMRMCVLPNQSSLTSALNSCCGLEAIVSGDESKEVNGLRKFSSESILEVDCSSHHRRSSILYQEIRKMTITEREEDRETVTNATIEQIKEKEEEQEEEIDQTKKEEDDDEELNLDAMLSEIVKDSESGSSMKEMEEHEEQVSKRTRIAESGEAEVAEEAETEQLRIGSDPAVDPLDITMEIVSKYHDFVDFALEILEEEQKYEEEQKYGEEQKIEEEMKTQLWSEVFERGKQLVESLKQRLQRLPYELNRMKNDKNLREKYTTRKFCVQHILPQLRHLNSRVDTCPHIRILSDDNSTVRVLPLYFDELHDCKIDLFAMMELIRDLKE

Homology

[Close]

BLAST of Cp4.1LG19g06360 vs. ExPASy Swiss-Prot
Match: Q9FHF9 (Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H49 PE=2 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.4e-65
Identity = 117/213 (54.93%), Postives = 158/213 (74.18%), Query Frame = 0


Query: 5   GRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGGLD 64
           G+V+ AER F++MP +D AAWNSMVHGY   G+V+DA++LF++MP +NVISWT++I GLD
Sbjct: 142 GKVDQAERLFYQMPVKDTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLD 201

Query: 65  QNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFDEY 124
           QN RS EAL +F+ ML   IK TS    C +TACAN   F +G+Q+HGLI+K G  ++EY
Sbjct: 202 QNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEY 261

Query: 125 IAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMRMC 184
           ++ASLITFYANCK I ++  +F++ +   VAVWTALL+GY LN KH+DAL +F GM+R  
Sbjct: 262 VSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNS 321

Query: 185 VLPNQSSLTSALNSCCGLEAIVSGDESKEVNGL 218
           +LPNQS+  S LNSC  L  +   D  KE++G+
Sbjct: 322 ILPNQSTFASGLNSCSALGTL---DWGKEMHGV 351

[Close]

BLAST of Cp4.1LG19g06360 vs. ExPASy Swiss-Prot
Match: Q9SY02 (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 8.4e-32
Identity = 64/194 (32.99%), Postives = 116/194 (59.79%), Query Frame = 0


Query: 6   RVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGGLDQ 65
           R+E+A+  F  MP R+V+ WN+M+ GY   G++ +A  LF+KMP R+ +SW ++I G  Q
Sbjct: 327 RMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQ 386

Query: 66  NGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFDEYI 125
           +G S+EAL +F +M     +   S+ + AL+ CA++    +G Q+HG +VK G+    ++
Sbjct: 387 SGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFV 446

Query: 126 AASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMRMCV 185
             +L+  Y  C  I+ A D+F +   +++  W  ++ GY  +   + ALR F+ M R  +
Sbjct: 447 GNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGL 506

Query: 186 LPNQSSLTSALNSC 200
            P+ +++ + L++C
Sbjct: 507 KPDDATMVAVLSAC 520

[Close]

BLAST of Cp4.1LG19g06360 vs. ExPASy Swiss-Prot
Match: Q9FJY7 (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.3e-29
Identity = 67/195 (34.36%), Postives = 109/195 (55.90%), Query Frame = 0


Query: 5   GRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGGLD 64
           G  ++A   F  +P  D  +WNS++ GY   G+++ A+ LF KM  +N ISWT++I G  
Sbjct: 164 GNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYV 223

Query: 65  QNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFDEY 124
           Q   + EAL +F +M  S ++P + +LA AL+ACA +     G  IH  + KT    D  
Sbjct: 224 QADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSV 283

Query: 125 IAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMRMC 184
           +   LI  YA C  ++ A ++F +  +++V  WTAL++GY  +    +A+  F  M +M 
Sbjct: 284 LGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMG 343

Query: 185 VLPNQSSLTSALNSC 200
           + PN  + T+ L +C
Sbjct: 344 IKPNVITFTAVLTAC 358

[Close]

BLAST of Cp4.1LG19g06360 vs. ExPASy Swiss-Prot
Match: Q9SIT7 (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E76 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.9e-28
Identity = 69/206 (33.50%), Postives = 110/206 (53.40%), Query Frame = 0


Query: 5   GRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGGLD 64
           G +E   + F +MP R++  WNS+V G    G +++A  LF  MP R+  +W S++ G  
Sbjct: 69  GSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFA 128

Query: 65  QNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFDEY 124
           Q+ R  EAL  F  M          + A  L+AC+ +     GVQ+H LI K+    D Y
Sbjct: 129 QHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVY 188

Query: 125 IAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMRMC 184
           I ++L+  Y+ C  + +A  +F++   RNV  W +L+T +  N    +AL VF+ M+   
Sbjct: 189 IGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESR 248

Query: 185 VLPNQSSLTSALNSCCGLEAIVSGDE 211
           V P++ +L S +++C  L AI  G E
Sbjct: 249 VEPDEVTLASVISACASLSAIKVGQE 274

[Close]

BLAST of Cp4.1LG19g06360 vs. ExPASy Swiss-Prot
Match: Q9FNN7 (Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E20 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.5e-28
Identity = 73/208 (35.10%), Postives = 109/208 (52.40%), Query Frame = 0


Query: 5   GRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGGLD 64
           G +  A R F EM  RDV  WN+M+ GY   G ++ A+ELF+ MP +NV SWT+VI G  
Sbjct: 131 GALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFS 190

Query: 65  QNGRSYEALLVFQKM-LASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFDE 124
           QNG   EAL +F  M     +KP   T+   L ACAN+    IG ++ G   + G   + 
Sbjct: 191 QNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNI 250

Query: 125 YIAASLITFYANCKLIQNAFDIFND-DLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMR 184
           Y+  + I  Y+ C +I  A  +F +   +RN+  W +++     + KHD+AL +F  M+R
Sbjct: 251 YVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLR 310

Query: 185 MCVLPNQSSLTSALNSCCGLEAIVSGDE 211
               P+  +    L +C     +V G E
Sbjct: 311 EGEKPDAVTFVGLLLACVHGGMVVKGQE 338

[Close]

BLAST of Cp4.1LG19g06360 vs. NCBI nr
Match: KAG6594505.1 (hypothetical protein SDJN03_11058, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 447 bits (1149), Expect = 3.69e-153
Identity = 250/260 (96.15%), Postives = 252/260 (96.92%), Query Frame = 0


Query: 247 MTITEREEDRETVTNATIEQIKEKEEEQEEEIDQTKKEEDDDEELNLDAMLSEIVKDSES 306
           MTITEREEDRETVTNATIE+IKEKEEE+EEEIDQTKKEEDDDEELNLD MLSEIVKDSES
Sbjct: 1   MTITEREEDRETVTNATIEEIKEKEEEEEEEIDQTKKEEDDDEELNLDTMLSEIVKDSES 60

Query: 307 GSSMKEMEEHEEQVSKRTRIAESGEAEVAEEAETEQLRIGSDPAVDPLDITMEIVSKYHD 366
           GSSMKEMEEHEEQ SKRTRIAESG      EAETEQLRIGSDPAVDPLDITMEIVSKYHD
Sbjct: 61  GSSMKEMEEHEEQESKRTRIAESG------EAETEQLRIGSDPAVDPLDITMEIVSKYHD 120

Query: 367 FVDFALEILEEEQKYEEEQKYGEEQKIEEEMKTQLWSEVFERGKQLVESLKQRLQRLPYE 426
           FVDFALEILEEEQKYEEEQKYGEEQKIEEEMKTQLWSEVFERGKQLVESLKQRLQRLPYE
Sbjct: 121 FVDFALEILEEEQKYEEEQKYGEEQKIEEEMKTQLWSEVFERGKQLVESLKQRLQRLPYE 180

Query: 427 LNRMKNDKNLREKYTTRKFCVQHILPQLRHLNSRVDTCPHIRILSDDNSTVRVLPLYFDE 486
           LNRMKNDKNLREKYTTRKFCVQHILPQLRHLNSRVDTCPHIRILSDDNSTVRVLPLYFDE
Sbjct: 181 LNRMKNDKNLREKYTTRKFCVQHILPQLRHLNSRVDTCPHIRILSDDNSTVRVLPLYFDE 240

Query: 487 LHDCKIDLFAMMELIRDLKE 506
           LHDCKIDLFAMMELIRDLKE
Sbjct: 241 LHDCKIDLFAMMELIRDLKE 254

[Close]

BLAST of Cp4.1LG19g06360 vs. NCBI nr
Match: XP_022926452.1 (pentatricopeptide repeat-containing protein At5g46460, mitochondrial isoform X2 [Cucurbita moschata])

HSP 1 Score: 419 bits (1076), Expect = 6.13e-136
Identity = 204/215 (94.88%), Postives = 208/215 (96.74%), Query Frame = 0


Query: 3   NFGRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGG 62
            FGRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGG
Sbjct: 156 EFGRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGG 215

Query: 63  LDQNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFD 122
           LDQNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFD
Sbjct: 216 LDQNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFD 275

Query: 123 EYIAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMR 182
           EYIAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMR
Sbjct: 276 EYIAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMR 335

Query: 183 MCVLPNQSSLTSALNSCCGLEAIVSGDESKEVNGL 217
           MCVLPNQSSLTSALNSCCGLEA+   D  +EV+ +
Sbjct: 336 MCVLPNQSSLTSALNSCCGLEAV---DRGREVHSV 367

[Close]

BLAST of Cp4.1LG19g06360 vs. NCBI nr
Match: XP_023518896.1 (pentatricopeptide repeat-containing protein At5g46460, mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023518897.1 pentatricopeptide repeat-containing protein At5g46460, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 419 bits (1076), Expect = 6.13e-136
Identity = 204/215 (94.88%), Postives = 208/215 (96.74%), Query Frame = 0


Query: 3   NFGRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGG 62
            FGRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGG
Sbjct: 156 EFGRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGG 215

Query: 63  LDQNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFD 122
           LDQNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFD
Sbjct: 216 LDQNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFD 275

Query: 123 EYIAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMR 182
           EYIAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMR
Sbjct: 276 EYIAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMR 335

Query: 183 MCVLPNQSSLTSALNSCCGLEAIVSGDESKEVNGL 217
           MCVLPNQSSLTSALNSCCGLEA+   D  +EV+ +
Sbjct: 336 MCVLPNQSSLTSALNSCCGLEAV---DRGREVHSV 367

[Close]

BLAST of Cp4.1LG19g06360 vs. NCBI nr
Match: XP_022926451.1 (pentatricopeptide repeat-containing protein At5g46460, mitochondrial isoform X1 [Cucurbita moschata])

HSP 1 Score: 419 bits (1076), Expect = 1.37e-135
Identity = 204/215 (94.88%), Postives = 208/215 (96.74%), Query Frame = 0


Query: 3   NFGRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGG 62
            FGRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGG
Sbjct: 156 EFGRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGG 215

Query: 63  LDQNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFD 122
           LDQNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFD
Sbjct: 216 LDQNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFD 275

Query: 123 EYIAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMR 182
           EYIAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMR
Sbjct: 276 EYIAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMR 335

Query: 183 MCVLPNQSSLTSALNSCCGLEAIVSGDESKEVNGL 217
           MCVLPNQSSLTSALNSCCGLEA+   D  +EV+ +
Sbjct: 336 MCVLPNQSSLTSALNSCCGLEAV---DRGREVHSV 367

[Close]

BLAST of Cp4.1LG19g06360 vs. NCBI nr
Match: XP_023518895.1 (pentatricopeptide repeat-containing protein At5g46460, mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 419 bits (1076), Expect = 1.37e-135
Identity = 204/215 (94.88%), Postives = 208/215 (96.74%), Query Frame = 0


Query: 3   NFGRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGG 62
            FGRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGG
Sbjct: 156 EFGRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGG 215

Query: 63  LDQNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFD 122
           LDQNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFD
Sbjct: 216 LDQNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFD 275

Query: 123 EYIAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMR 182
           EYIAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMR
Sbjct: 276 EYIAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMR 335

Query: 183 MCVLPNQSSLTSALNSCCGLEAIVSGDESKEVNGL 217
           MCVLPNQSSLTSALNSCCGLEA+   D  +EV+ +
Sbjct: 336 MCVLPNQSSLTSALNSCCGLEAV---DRGREVHSV 367

[Close]

BLAST of Cp4.1LG19g06360 vs. ExPASy TrEMBL
Match: A0A6J1EEH2 (pentatricopeptide repeat-containing protein At5g46460, mitochondrial isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111433598 PE=3 SV=1)

HSP 1 Score: 419 bits (1076), Expect = 2.97e-136
Identity = 204/215 (94.88%), Postives = 208/215 (96.74%), Query Frame = 0


Query: 3   NFGRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGG 62
            FGRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGG
Sbjct: 156 EFGRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGG 215

Query: 63  LDQNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFD 122
           LDQNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFD
Sbjct: 216 LDQNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFD 275

Query: 123 EYIAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMR 182
           EYIAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMR
Sbjct: 276 EYIAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMR 335

Query: 183 MCVLPNQSSLTSALNSCCGLEAIVSGDESKEVNGL 217
           MCVLPNQSSLTSALNSCCGLEA+   D  +EV+ +
Sbjct: 336 MCVLPNQSSLTSALNSCCGLEAV---DRGREVHSV 367

[Close]

BLAST of Cp4.1LG19g06360 vs. ExPASy TrEMBL
Match: A0A6J1EEY6 (pentatricopeptide repeat-containing protein At5g46460, mitochondrial isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433598 PE=3 SV=1)

HSP 1 Score: 419 bits (1076), Expect = 6.61e-136
Identity = 204/215 (94.88%), Postives = 208/215 (96.74%), Query Frame = 0


Query: 3   NFGRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGG 62
            FGRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGG
Sbjct: 156 EFGRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGG 215

Query: 63  LDQNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFD 122
           LDQNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFD
Sbjct: 216 LDQNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFD 275

Query: 123 EYIAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMR 182
           EYIAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMR
Sbjct: 276 EYIAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMR 335

Query: 183 MCVLPNQSSLTSALNSCCGLEAIVSGDESKEVNGL 217
           MCVLPNQSSLTSALNSCCGLEA+   D  +EV+ +
Sbjct: 336 MCVLPNQSSLTSALNSCCGLEAV---DRGREVHSV 367

[Close]

BLAST of Cp4.1LG19g06360 vs. ExPASy TrEMBL
Match: A0A6J1KR12 (pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111497475 PE=3 SV=1)

HSP 1 Score: 414 bits (1065), Expect = 1.32e-134
Identity = 202/215 (93.95%), Postives = 207/215 (96.28%), Query Frame = 0


Query: 3   NFGRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGG 62
            FGRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGG
Sbjct: 156 EFGRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGG 215

Query: 63  LDQNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFD 122
           LDQNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTF IGVQIHGLIVKTGHCFD
Sbjct: 216 LDQNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFVIGVQIHGLIVKTGHCFD 275

Query: 123 EYIAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMR 182
           EYIAASLITFYANCKLIQNAFDIFN+DLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMR
Sbjct: 276 EYIAASLITFYANCKLIQNAFDIFNEDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMR 335

Query: 183 MCVLPNQSSLTSALNSCCGLEAIVSGDESKEVNGL 217
           MCVLPNQSSLTSALNSCCGLEA+   D  +EV+ +
Sbjct: 336 MCVLPNQSSLTSALNSCCGLEAV---DRGREVHSV 367

[Close]

BLAST of Cp4.1LG19g06360 vs. ExPASy TrEMBL
Match: A0A6J1CKH5 (pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111012276 PE=3 SV=1)

HSP 1 Score: 369 bits (948), Expect = 8.16e-117
Identity = 172/208 (82.69%), Postives = 191/208 (91.83%), Query Frame = 0


Query: 3   NFGRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGG 62
            FGRVE+AER FWEMPTRDVAAWNSM+HGYFSNGRVEDA ELFEKMP RNVISWTS+IGG
Sbjct: 154 EFGRVEIAERLFWEMPTRDVAAWNSMIHGYFSNGRVEDAFELFEKMPLRNVISWTSMIGG 213

Query: 63  LDQNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFD 122
           L QNG+S+EALL+FQKML SF+KPT STLAC LT CAN+   F+GVQIHGLIVKTG+CFD
Sbjct: 214 LGQNGKSFEALLIFQKMLTSFVKPTPSTLACVLTVCANMCALFLGVQIHGLIVKTGYCFD 273

Query: 123 EYIAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMR 182
           EYI+ASLITFYANCKLI+NA DIFND+LRRNV VWTALLTGYGLNCKH++AL+VFKGMMR
Sbjct: 274 EYISASLITFYANCKLIENASDIFNDNLRRNVVVWTALLTGYGLNCKHENALQVFKGMMR 333

Query: 183 MCVLPNQSSLTSALNSCCGLEAIVSGDE 210
           +CV+PNQSSLTSALNSCCGLEA+  G E
Sbjct: 334 ICVIPNQSSLTSALNSCCGLEAVDRGRE 361

[Close]

BLAST of Cp4.1LG19g06360 vs. ExPASy TrEMBL
Match: A0A5D3CMS7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008650 PE=3 SV=1)

HSP 1 Score: 353 bits (906), Expect = 1.53e-111
Identity = 169/215 (78.60%), Postives = 192/215 (89.30%), Query Frame = 0


Query: 3   NFGRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGG 62
            FGRVE+AE  F  MPT+DVAAWNSMVHG+FSNGR+EDA+ELFEKMP+RNVI+WTSVIGG
Sbjct: 70  EFGRVEIAECLFRVMPTKDVAAWNSMVHGFFSNGRIEDAIELFEKMPYRNVITWTSVIGG 129

Query: 63  LDQNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFD 122
           LD NGRS+EAL+VFQKMLAS+ KP+SSTLACALTACANI   FIGVQIHGLI KTG+CFD
Sbjct: 130 LDHNGRSFEALVVFQKMLASYFKPSSSTLACALTACANICAPFIGVQIHGLIFKTGYCFD 189

Query: 123 EYIAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMR 182
           EY++ASLI+FYANCKLI+NA  IFND++RRNV VWTALLTGYGLNCKH DAL+VFKGMMR
Sbjct: 190 EYVSASLISFYANCKLIENASSIFNDNVRRNVVVWTALLTGYGLNCKHTDALQVFKGMMR 249

Query: 183 MCVLPNQSSLTSALNSCCGLEAIVSGDESKEVNGL 217
           M VLPNQSS TSALNSCCGLEA+   D  +EV+ +
Sbjct: 250 MSVLPNQSSFTSALNSCCGLEAV---DRGREVHAV 281

[Close]

BLAST of Cp4.1LG19g06360 vs. TAIR 10
Match: AT5G46460.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 250.8 bits (639), Expect = 2.4e-66
Identity = 117/213 (54.93%), Postives = 158/213 (74.18%), Query Frame = 0


Query: 5   GRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGGLD 64
           G+V+ AER F++MP +D AAWNSMVHGY   G+V+DA++LF++MP +NVISWT++I GLD
Sbjct: 142 GKVDQAERLFYQMPVKDTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLD 201

Query: 65  QNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFDEY 124
           QN RS EAL +F+ ML   IK TS    C +TACAN   F +G+Q+HGLI+K G  ++EY
Sbjct: 202 QNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEY 261

Query: 125 IAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMRMC 184
           ++ASLITFYANCK I ++  +F++ +   VAVWTALL+GY LN KH+DAL +F GM+R  
Sbjct: 262 VSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNS 321

Query: 185 VLPNQSSLTSALNSCCGLEAIVSGDESKEVNGL 218
           +LPNQS+  S LNSC  L  +   D  KE++G+
Sbjct: 322 ILPNQSTFASGLNSCSALGTL---DWGKEMHGV 351

[Close]

BLAST of Cp4.1LG19g06360 vs. TAIR 10
Match: AT4G02750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 139.8 bits (351), Expect = 6.0e-33
Identity = 64/194 (32.99%), Postives = 116/194 (59.79%), Query Frame = 0


Query: 6   RVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGGLDQ 65
           R+E+A+  F  MP R+V+ WN+M+ GY   G++ +A  LF+KMP R+ +SW ++I G  Q
Sbjct: 327 RMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQ 386

Query: 66  NGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFDEYI 125
           +G S+EAL +F +M     +   S+ + AL+ CA++    +G Q+HG +VK G+    ++
Sbjct: 387 SGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFV 446

Query: 126 AASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMRMCV 185
             +L+  Y  C  I+ A D+F +   +++  W  ++ GY  +   + ALR F+ M R  +
Sbjct: 447 GNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGL 506

Query: 186 LPNQSSLTSALNSC 200
            P+ +++ + L++C
Sbjct: 507 KPDDATMVAVLSAC 520

[Close]

BLAST of Cp4.1LG19g06360 vs. TAIR 10
Match: AT3G61170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 133.3 bits (334), Expect = 5.6e-31
Identity = 71/201 (35.32%), Postives = 104/201 (51.74%), Query Frame = 0


Query: 5   GRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGGLD 64
           GRV+ A + F +MP RD   WN+M+  Y ++ R+ DA +LF   P +N ISW ++I G  
Sbjct: 42  GRVDEARQMFDKMPERDEFTWNTMIVAYSNSRRLSDAEKLFRSNPVKNTISWNALISGYC 101

Query: 65  QNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFDEY 124
           ++G   EA  +F +M +  IKP   TL   L  C ++     G QIHG  +KTG   D  
Sbjct: 102 KSGSKVEAFNLFWEMQSDGIKPNEYTLGSVLRMCTSLVLLLRGEQIHGHTIKTGFDLDVN 161

Query: 125 IAASLITFYANCKLIQNAFDIFND-DLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMRM 184
           +   L+  YA CK I  A  +F   +  +N   WT++LTGY  N     A+  F+ + R 
Sbjct: 162 VVNGLLAMYAQCKRISEAEYLFETMEGEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRRE 221

Query: 185 CVLPNQSSLTSALNSCCGLEA 205
               NQ +  S L +C  + A
Sbjct: 222 GNQSNQYTFPSVLTACASVSA 242

[Close]

BLAST of Cp4.1LG19g06360 vs. TAIR 10
Match: AT5G66520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 132.5 bits (332), Expect = 9.6e-31
Identity = 67/195 (34.36%), Postives = 109/195 (55.90%), Query Frame = 0


Query: 5   GRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGGLD 64
           G  ++A   F  +P  D  +WNS++ GY   G+++ A+ LF KM  +N ISWT++I G  
Sbjct: 164 GNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYV 223

Query: 65  QNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFDEY 124
           Q   + EAL +F +M  S ++P + +LA AL+ACA +     G  IH  + KT    D  
Sbjct: 224 QADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSV 283

Query: 125 IAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMRMC 184
           +   LI  YA C  ++ A ++F +  +++V  WTAL++GY  +    +A+  F  M +M 
Sbjct: 284 LGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMG 343

Query: 185 VLPNQSSLTSALNSC 200
           + PN  + T+ L +C
Sbjct: 344 IKPNVITFTAVLTAC 358

[Close]

BLAST of Cp4.1LG19g06360 vs. TAIR 10
Match: AT2G13600.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 128.6 bits (322), Expect = 1.4e-29
Identity = 69/206 (33.50%), Postives = 110/206 (53.40%), Query Frame = 0


Query: 5   GRVEVAERFFWEMPTRDVAAWNSMVHGYFSNGRVEDAVELFEKMPFRNVISWTSVIGGLD 64
           G +E   + F +MP R++  WNS+V G    G +++A  LF  MP R+  +W S++ G  
Sbjct: 69  GSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFA 128

Query: 65  QNGRSYEALLVFQKMLASFIKPTSSTLACALTACANIRTFFIGVQIHGLIVKTGHCFDEY 124
           Q+ R  EAL  F  M          + A  L+AC+ +     GVQ+H LI K+    D Y
Sbjct: 129 QHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVY 188

Query: 125 IAASLITFYANCKLIQNAFDIFNDDLRRNVAVWTALLTGYGLNCKHDDALRVFKGMMRMC 184
           I ++L+  Y+ C  + +A  +F++   RNV  W +L+T +  N    +AL VF+ M+   
Sbjct: 189 IGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESR 248

Query: 185 VLPNQSSLTSALNSCCGLEAIVSGDE 211
           V P++ +L S +++C  L AI  G E
Sbjct: 249 VEPDEVTLASVISACASLSAIKVGQE 274

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g06360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHF9	3.4e-65	54.93	Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidop...	[more]
Q9SY02	8.4e-32	32.99	Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX...	[more]
Q9FJY7	1.3e-29	34.36	Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX...	[more]
Q9SIT7	1.9e-28	33.50	Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX...	[more]
Q9FNN7	2.5e-28	35.10	Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana OX...	[more]

BLAST of Cp4.1LG19g06360 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594505.1	3.69e-153	96.15	hypothetical protein SDJN03_11058, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022926452.1	6.13e-136	94.88	pentatricopeptide repeat-containing protein At5g46460, mitochondrial isoform X2 ...	[more]
XP_023518896.1	6.13e-136	94.88	pentatricopeptide repeat-containing protein At5g46460, mitochondrial-like isofor...	[more]
XP_022926451.1	1.37e-135	94.88	pentatricopeptide repeat-containing protein At5g46460, mitochondrial isoform X1 ...	[more]
XP_023518895.1	1.37e-135	94.88	pentatricopeptide repeat-containing protein At5g46460, mitochondrial-like isofor...	[more]

BLAST of Cp4.1LG19g06360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EEH2	2.97e-136	94.88	pentatricopeptide repeat-containing protein At5g46460, mitochondrial isoform X2 ...	[more]
A0A6J1EEY6	6.61e-136	94.88	pentatricopeptide repeat-containing protein At5g46460, mitochondrial isoform X1 ...	[more]
A0A6J1KR12	1.32e-134	93.95	pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Cucurbit...	[more]
A0A6J1CKH5	8.16e-117	82.69	pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Momordic...	[more]
A0A5D3CMS7	1.53e-111	78.60	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Cp4.1LG19g06360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46460.1	2.4e-66	54.93	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G02750.1	6.0e-33	32.99	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G61170.1	5.6e-31	35.32	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G66520.1	9.6e-31	34.36	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G13600.1	1.4e-29	33.50	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 413..433
None	No IPR available	COILS	Coil	Coil	coord: 264..291
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 268..291
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 305..343
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 270..291
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 303..346
None	No IPR available	PANTHER	PTHR47929:SF20	BNACNNG07920D PROTEIN	coord: 3..223
None	No IPR available	PANTHER	PTHR47929	FAMILY NOT NAMED	coord: 3..223
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 156..183 e-value: 0.0013 score: 18.8 coord: 54..80 e-value: 0.035 score: 14.3
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 24..51 e-value: 4.5E-7 score: 27.6 coord: 156..188 e-value: 4.8E-6 score: 24.4
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 21..53 e-value: 7.8E-8 score: 32.4
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 21..55 score: 11.849223
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 153..187 score: 9.700809
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 107..213 e-value: 1.8E-14 score: 55.5 coord: 1..104 e-value: 1.8E-23 score: 84.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG19g06360.1	Cp4.1LG19g06360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding