Cp4.1LG19g05600 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG19g05600
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG19: 7902915 .. 7903325 (-)
RNA-Seq ExpressionCp4.1LG19g05600
SyntenyCp4.1LG19g05600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTACTATCAAATCAATGGCAGCGATGGCCGTGTATTTGCTGTTTATCGTCGCAATCGCGGCGGCGCTGGAGATTCGGCCGTCGGAGCATGGTCTGGAGTTTCAGAGCCCTCCGGCAGCGGGAGACAAATCGTCGCCGGAGATGCGGTCGTTCTTCGGAGGAACTTCGTCGCCGACGCCGGAAGTGGCATTGCCGTTGCCGAAGGCGATGAATTCCAGCGAGGCGCCGGGATGGTGGACCCACCGTGACGGTGGAGATAAACGACTTAGAAATGCACTATTGGTGGCGACGGCGGCTTGTGGAATAACAGGTGTCACTTTATTAGTCGGTTCTACGTTATACTACATTTTTAAGGTCAAAAATCAAAGATCATTGCCGCTCTCTTCTAACAACAGTAATCACAAATAA

mRNA sequence

ATGATTACTATCAAATCAATGGCAGCGATGGCCGTGTATTTGCTGTTTATCGTCGCAATCGCGGCGGCGCTGGAGATTCGGCCGTCGGAGCATGGTCTGGAGTTTCAGAGCCCTCCGGCAGCGGGAGACAAATCGTCGCCGGAGATGCGGTCGTTCTTCGGAGGAACTTCGTCGCCGACGCCGGAAGTGGCATTGCCGTTGCCGAAGGCGATGAATTCCAGCGAGGCGCCGGGATGGTGGACCCACCGTGACGGTGGAGATAAACGACTTAGAAATGCACTATTGGTGGCGACGGCGGCTTGTGGAATAACAGGTGTCACTTTATTAGTCGGTTCTACGTTATACTACATTTTTAAGGTCAAAAATCAAAGATCATTGCCGCTCTCTTCTAACAACAGTAATCACAAATAA

Coding sequence (CDS)

ATGATTACTATCAAATCAATGGCAGCGATGGCCGTGTATTTGCTGTTTATCGTCGCAATCGCGGCGGCGCTGGAGATTCGGCCGTCGGAGCATGGTCTGGAGTTTCAGAGCCCTCCGGCAGCGGGAGACAAATCGTCGCCGGAGATGCGGTCGTTCTTCGGAGGAACTTCGTCGCCGACGCCGGAAGTGGCATTGCCGTTGCCGAAGGCGATGAATTCCAGCGAGGCGCCGGGATGGTGGACCCACCGTGACGGTGGAGATAAACGACTTAGAAATGCACTATTGGTGGCGACGGCGGCTTGTGGAATAACAGGTGTCACTTTATTAGTCGGTTCTACGTTATACTACATTTTTAAGGTCAAAAATCAAAGATCATTGCCGCTCTCTTCTAACAACAGTAATCACAAATAA

Protein sequence

MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPTPEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKVKNQRSLPLSSNNSNHK
Homology
BLAST of Cp4.1LG19g05600 vs. NCBI nr
Match: XP_023518243.1 (uncharacterized protein LOC111781779 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 260 bits (665), Expect = 2.31e-87
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0

Query: 1   MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT 60
           MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT
Sbjct: 1   MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT 60

Query: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKV 120
           PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKV
Sbjct: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKV 120

Query: 121 KNQRSLPLSSNNSNHK 136
           KNQRSLPLSSNNSNHK
Sbjct: 121 KNQRSLPLSSNNSNHK 136

BLAST of Cp4.1LG19g05600 vs. NCBI nr
Match: XP_022926736.1 (uncharacterized protein LOC111433768 [Cucurbita moschata])

HSP 1 Score: 256 bits (655), Expect = 7.75e-86
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0

Query: 1   MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT 60
           MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQS PAAGDKSSPEMRSFFGGTSSPT
Sbjct: 1   MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSLPAAGDKSSPEMRSFFGGTSSPT 60

Query: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKV 120
           PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKV
Sbjct: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKV 120

Query: 121 KNQRSLPLSSNNSNHK 136
           KNQRSLPLSSNNSNHK
Sbjct: 121 KNQRSLPLSSNNSNHK 136

BLAST of Cp4.1LG19g05600 vs. NCBI nr
Match: XP_023003567.1 (uncharacterized protein LOC111497130 [Cucurbita maxima])

HSP 1 Score: 256 bits (654), Expect = 1.10e-85
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 0

Query: 1   MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT 60
           MITIKSMAAMAVYLLFIVAI AALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT
Sbjct: 1   MITIKSMAAMAVYLLFIVAIEAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT 60

Query: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKV 120
           PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACG+TGVTLLVGSTLYYIFKV
Sbjct: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGMTGVTLLVGSTLYYIFKV 120

Query: 121 KNQRSLPLSSNNSNHK 136
           KNQRSLPLSSNN+NHK
Sbjct: 121 KNQRSLPLSSNNNNHK 136

BLAST of Cp4.1LG19g05600 vs. NCBI nr
Match: KAG6594423.1 (hypothetical protein SDJN03_10976, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 248 bits (632), Expect = 2.04e-82
Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 0

Query: 7   MAAMAVYLLFIVAIAAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPTPEVALP 66
           MAAMAVYLLFIVAIAAALEIRPSEHGLEFQS PAAGDKSSPEMRSFFGGTSSPTPEVALP
Sbjct: 1   MAAMAVYLLFIVAIAAALEIRPSEHGLEFQSLPAAGDKSSPEMRSFFGGTSSPTPEVALP 60

Query: 67  LPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKVKNQRSL 126
           LPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKVKNQRSL
Sbjct: 61  LPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKVKNQRSL 120

Query: 127 PLSSNNSNHK 136
           PLSSNNSNHK
Sbjct: 121 PLSSNNSNHK 130

BLAST of Cp4.1LG19g05600 vs. NCBI nr
Match: KAG7026421.1 (hypothetical protein SDJN02_10421, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 216 bits (550), Expect = 4.68e-70
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 0

Query: 7   MAAMAVYLLFIVAIAAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPTPEVALP 66
           MAAMAVYLLFIVAIAAALEIRPSEHGLEFQS PAAGDKSSPEMRSFFGGTSSPTPEVALP
Sbjct: 1   MAAMAVYLLFIVAIAAALEIRPSEHGLEFQSLPAAGDKSSPEMRSFFGGTSSPTPEVALP 60

Query: 67  LPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKV 120
           LPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFK+
Sbjct: 61  LPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKM 114

BLAST of Cp4.1LG19g05600 vs. ExPASy TrEMBL
Match: A0A6J1EFQ9 (uncharacterized protein LOC111433768 OS=Cucurbita moschata OX=3662 GN=LOC111433768 PE=4 SV=1)

HSP 1 Score: 256 bits (655), Expect = 3.75e-86
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0

Query: 1   MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT 60
           MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQS PAAGDKSSPEMRSFFGGTSSPT
Sbjct: 1   MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSLPAAGDKSSPEMRSFFGGTSSPT 60

Query: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKV 120
           PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKV
Sbjct: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKV 120

Query: 121 KNQRSLPLSSNNSNHK 136
           KNQRSLPLSSNNSNHK
Sbjct: 121 KNQRSLPLSSNNSNHK 136

BLAST of Cp4.1LG19g05600 vs. ExPASy TrEMBL
Match: A0A6J1KMY3 (uncharacterized protein LOC111497130 OS=Cucurbita maxima OX=3661 GN=LOC111497130 PE=4 SV=1)

HSP 1 Score: 256 bits (654), Expect = 5.33e-86
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 0

Query: 1   MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT 60
           MITIKSMAAMAVYLLFIVAI AALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT
Sbjct: 1   MITIKSMAAMAVYLLFIVAIEAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT 60

Query: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKV 120
           PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACG+TGVTLLVGSTLYYIFKV
Sbjct: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGMTGVTLLVGSTLYYIFKV 120

Query: 121 KNQRSLPLSSNNSNHK 136
           KNQRSLPLSSNN+NHK
Sbjct: 121 KNQRSLPLSSNNNNHK 136

BLAST of Cp4.1LG19g05600 vs. ExPASy TrEMBL
Match: A0A6J1EFW4 (uncharacterized protein LOC111433017 OS=Cucurbita moschata OX=3662 GN=LOC111433017 PE=4 SV=1)

HSP 1 Score: 214 bits (544), Expect = 1.98e-68
Identity = 112/135 (82.96%), Postives = 122/135 (90.37%), Query Frame = 0

Query: 2   ITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPTP 61
           I IK +AAM V+L  IVA+A+ALEIRPSEHGLEFQSPP AG+KSSPEMRSFF GTSSP P
Sbjct: 59  IPIKPVAAMVVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSPIP 118

Query: 62  EVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKVK 121
           +  LPLPKAMNSSEAPGWWTHRDGG+KR+RNALLVATAACGITGVTLLVGSTL+YI+KVK
Sbjct: 119 DTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYKVK 178

Query: 122 NQRSLPLSSNNSNHK 136
           NQ  LPLSSNN NHK
Sbjct: 179 NQTPLPLSSNN-NHK 192

BLAST of Cp4.1LG19g05600 vs. ExPASy TrEMBL
Match: A0A6J1CZN3 (uncharacterized protein LOC111015729 OS=Momordica charantia OX=3673 GN=LOC111015729 PE=4 SV=1)

HSP 1 Score: 206 bits (525), Expect = 2.73e-66
Identity = 115/140 (82.14%), Postives = 120/140 (85.71%), Query Frame = 0

Query: 1   MITIKSMAAMAVYLLFIVAIAA----ALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGT 60
           MI IK  AAMAV L  IVA+ A    ALEIRPSEHGLEFQSPP AGDKSSPEM SFFGG 
Sbjct: 1   MIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGR 60

Query: 61  SSPTPEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYY 120
           SSPTP+ ALPLPKAMNSSEAPGWWT RDGGD RLRNALLVATAA GITGVTLLVGS L+Y
Sbjct: 61  SSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLVATAAFGITGVTLLVGSVLFY 120

Query: 121 IFKVKNQRSLPLSSNNSNHK 136
           ++KVKNQRSLPLSSNN NHK
Sbjct: 121 VYKVKNQRSLPLSSNN-NHK 139

BLAST of Cp4.1LG19g05600 vs. ExPASy TrEMBL
Match: A0A0A0KM65 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525480 PE=4 SV=1)

HSP 1 Score: 206 bits (524), Expect = 3.40e-66
Identity = 106/136 (77.94%), Postives = 117/136 (86.03%), Query Frame = 0

Query: 1   MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT 60
           MI IKS AA+  +   I +IAA  EIRPSEHGLEFQSPP  GDKSSPEMRSFFGG +SPT
Sbjct: 1   MIPIKSSAAIVAFFSLIASIAAVSEIRPSEHGLEFQSPPPVGDKSSPEMRSFFGGIASPT 60

Query: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKV 120
           PEVALP+PK +NSSE+PGWW H DGG+KRLRNALLVATAACGITGVTLLVGSTL+YIFK 
Sbjct: 61  PEVALPIPKTLNSSESPGWWNHHDGGNKRLRNALLVATAACGITGVTLLVGSTLFYIFKA 120

Query: 121 KNQRSLPLSSNNSNHK 136
           KN+RS+PLS NN NHK
Sbjct: 121 KNKRSMPLSPNN-NHK 135

BLAST of Cp4.1LG19g05600 vs. TAIR 10
Match: AT4G21740.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30515.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 4.6e-12
Identity = 50/132 (37.88%), Postives = 71/132 (53.79%), Query Frame = 0

Query: 13  YLLFIVAIAAALEIRPSEHGLEFQ--SPPAAGDKSSPEMRSFFGG--TSSPTPEVALPLP 72
           +L+     + A E+RPS+HGL++Q  SPP        +M+SFFG   +SSP P     LP
Sbjct: 22  FLVIFTGNSLAGELRPSDHGLQYQFSSPPTESHSPPGKMKSFFGDSHSSSPPPSHPQLLP 81

Query: 73  K--AMNSSEAPGWWTHRDGG----DKRLRNALLVATAACGITGVTLLVGSTLYYIFKV-K 132
           K  A +  +   WW  RDG     D  +R+  L A+  CG++GV LLV  TL Y F+  K
Sbjct: 82  KATAADGGDDDSWW--RDGAGIRRDHVMRHVFLAASIICGVSGVALLVVFTLIYFFRYRK 141

Query: 133 NQRSLPLSSNNS 134
           +  S   + N+S
Sbjct: 142 HNHSNSPTGNDS 151

BLAST of Cp4.1LG19g05600 vs. TAIR 10
Match: AT1G30515.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21740.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 4.4e-07
Identity = 43/133 (32.33%), Postives = 70/133 (52.63%), Query Frame = 0

Query: 10  MAVYLLFIVAIAA----ALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSS-PTPEVA 69
           +++ ++FI+ + +    A E+RPS+HGLE+   P      S EM SFFG  SS     ++
Sbjct: 13  ISMLIMFIIVLESTIINARELRPSDHGLEYYYEPG----ESSEMTSFFGPPSSNDLTSIS 72

Query: 70  LPLPKAMNSS-EAPGWWTHRDGGDKRLRN-ALLVATAACGITGVTLLVGSTLYYIFKVKN 129
            P    + S+ ++P     +D  D R+ N  L+V +  CG++GV L+V S L Y      
Sbjct: 73  SPSSSILPSAVKSPMKTLSKDQDDDRVMNHVLVVGSLVCGLSGVALMVASALIYFLGYPK 132

Query: 130 QRSLPLSSNNSNH 136
            ++   SS N +H
Sbjct: 133 TQN---SSVNCDH 138

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023518243.12.31e-87100.00uncharacterized protein LOC111781779 [Cucurbita pepo subsp. pepo][more]
XP_022926736.17.75e-8699.26uncharacterized protein LOC111433768 [Cucurbita moschata][more]
XP_023003567.11.10e-8597.79uncharacterized protein LOC111497130 [Cucurbita maxima][more]
KAG6594423.12.04e-8299.23hypothetical protein SDJN03_10976, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7026421.14.68e-7098.25hypothetical protein SDJN02_10421, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
A0A6J1EFQ93.75e-8699.26uncharacterized protein LOC111433768 OS=Cucurbita moschata OX=3662 GN=LOC1114337... [more]
A0A6J1KMY35.33e-8697.79uncharacterized protein LOC111497130 OS=Cucurbita maxima OX=3661 GN=LOC111497130... [more]
A0A6J1EFW41.98e-6882.96uncharacterized protein LOC111433017 OS=Cucurbita moschata OX=3662 GN=LOC1114330... [more]
A0A6J1CZN32.73e-6682.14uncharacterized protein LOC111015729 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A0A0KM653.40e-6677.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525480 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G21740.14.6e-1237.88unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G30515.14.4e-0732.33unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..58
NoneNo IPR availablePANTHERPTHR37189CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 4..130
NoneNo IPR availablePANTHERPTHR37189:SF4CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 4..130

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g05600.1Cp4.1LG19g05600.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane