Cp4.1LG19g05050 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG19g05050
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein BIC1-like
Location	Cp4.1LG19: 4131250 .. 4131606 (+)
RNA-Seq Expression	Cp4.1LG19g05050
Synteny	Cp4.1LG19g05050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTTTTAACCTCCCCTCTCAAACCCACCTCCCCATTATTGCCGGATAACCAAGAATCCGATCAAAAAAGTGACGATCAGAAGCTTCTGGCGGCGGAGGAGAACGGGCTCGAGCGGCTGAAGCGCCACCGTGTGGCGGTGGCGGGGCAGGTTTGGATCCCGGAGAAATGGGGTAAGGAAGAGCTTTTGAAGGATTGGATCGACGGCTCCGCATTTGAAGCTTCTTTGTTCCCTTCTGGGATTGTGTCGGCTCGCCGGGCTTTAGCTCGAGAAGCTAAGAGATCGTCGCCGAATAATAACTCCGCCACCGCCTCCGCCGCTGCCGGAGCTTTGAGAATATTGAACAGTTGTTGA

mRNA sequence

ATGGCTCTTTTAACCTCCCCTCTCAAACCCACCTCCCCATTATTGCCGGATAACCAAGAATCCGATCAAAAAAGTGACGATCAGAAGCTTCTGGCGGCGGAGGAGAACGGGCTCGAGCGGCTGAAGCGCCACCGTGTGGCGGTGGCGGGGCAGGTTTGGATCCCGGAGAAATGGGGTAAGGAAGAGCTTTTGAAGGATTGGATCGACGGCTCCGCATTTGAAGCTTCTTTGTTCCCTTCTGGGATTGTGTCGGCTCGCCGGGCTTTAGCTCGAGAAGCTAAGAGATCGTCGCCGAATAATAACTCCGCCACCGCCTCCGCCGCTGCCGGAGCTTTGAGAATATTGAACAGTTGTTGA

Coding sequence (CDS)

ATGGCTCTTTTAACCTCCCCTCTCAAACCCACCTCCCCATTATTGCCGGATAACCAAGAATCCGATCAAAAAAGTGACGATCAGAAGCTTCTGGCGGCGGAGGAGAACGGGCTCGAGCGGCTGAAGCGCCACCGTGTGGCGGTGGCGGGGCAGGTTTGGATCCCGGAGAAATGGGGTAAGGAAGAGCTTTTGAAGGATTGGATCGACGGCTCCGCATTTGAAGCTTCTTTGTTCCCTTCTGGGATTGTGTCGGCTCGCCGGGCTTTAGCTCGAGAAGCTAAGAGATCGTCGCCGAATAATAACTCCGCCACCGCCTCCGCCGCTGCCGGAGCTTTGAGAATATTGAACAGTTGTTGA

Protein sequence

MALLTSPLKPTSPLLPDNQESDQKSDDQKLLAAEENGLERLKRHRVAVAGQVWIPEKWGKEELLKDWIDGSAFEASLFPSGIVSARRALAREAKRSSPNNNSATASAAAGALRILNSC

Homology

[Close]

BLAST of Cp4.1LG19g05050 vs. ExPASy Swiss-Prot
Match: Q9LXJ1 (Protein BIC1 OS=Arabidopsis thaliana OX=3702 GN=BIC1 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.4e-16
Identity = 48/101 (47.52%), Postives = 59/101 (58.42%), Query Frame = 0


Query: 9   KPTSPLLPDNQESDQKSDDQKLLAAEE------------NGLERLKRHRVAVAGQVWIPE 68
           K   P LP    S   +D + L   EE             G ERLK+HR  +AG+VWIPE
Sbjct: 26  KQDPPSLPQEAASSVSADKKDLALLEEKPKQSQEEDRVDTGRERLKKHRREIAGRVWIPE 85

Query: 69  KWGKEELLKDWIDGSAFEASLFPSGIVSARRALAREAKRSS 98
            WG+EELLKDWID S F+  L P+GI SAR AL  EA+R++
Sbjct: 86  IWGQEELLKDWIDCSTFDTCLVPAGISSARTALVEEARRAA 126

[Close]

BLAST of Cp4.1LG19g05050 vs. ExPASy Swiss-Prot
Match: Q9M280 (Protein BIC2 OS=Arabidopsis thaliana OX=3702 GN=BIC2 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.8e-09
Identity = 42/115 (36.52%), Postives = 60/115 (52.17%), Query Frame = 0


Query: 7   PLKPTSPLLPDNQESDQKSDDQKLLAAEE---NGLERLKRHRVAVAGQVWIPEKWGKEEL 66
           P +   P+ P +    Q     K    E    +G +RLKRHR  VAG+V IP+ WGKE L
Sbjct: 7   PEETKEPISPGSSHRKQNKTGTKTCFPETTVLSGRDRLKRHREEVAGKVPIPDSWGKEGL 66

Query: 67  LKDWIDGSAFEASLFPSGIVSARRALAREAKRSSPNNNSATASAAAGALRILNSC 119
           L  W+D S F+A+   S IVSAR AL  ++      +++    +    LR+ +SC
Sbjct: 67  LMGWMDFSTFDAAFTSSQIVSARAALMADS-----GDDAGARGSRPQRLRVESSC 116

[Close]

BLAST of Cp4.1LG19g05050 vs. NCBI nr
Match: XP_023518112.1 (protein BIC1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224 bits (570), Expect = 1.88e-73
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MALLTSPLKPTSPLLPDNQESDQKSDDQKLLAAEENGLERLKRHRVAVAGQVWIPEKWGK 60
           MALLTSPLKPTSPLLPDNQESDQKSDDQKLLAAEENGLERLKRHRVAVAGQVWIPEKWGK
Sbjct: 1   MALLTSPLKPTSPLLPDNQESDQKSDDQKLLAAEENGLERLKRHRVAVAGQVWIPEKWGK 60

Query: 61  EELLKDWIDGSAFEASLFPSGIVSARRALAREAKRSSPNNNSATASAAAGALRILNSC 118
           EELLKDWIDGSAFEASLFPSGIVSARRALAREAKRSSPNNNSATASAAAGALRILNSC
Sbjct: 61  EELLKDWIDGSAFEASLFPSGIVSARRALAREAKRSSPNNNSATASAAAGALRILNSC 118

[Close]

BLAST of Cp4.1LG19g05050 vs. NCBI nr
Match: XP_022972606.1 (protein BIC1-like [Cucurbita maxima])

HSP 1 Score: 222 bits (565), Expect = 1.09e-72
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 1   MALLTSPLKPTSPLLPDNQESDQKSDDQKLLAAEENGLERLKRHRVAVAGQVWIPEKWGK 60
           MALLTSPLKPTSPLLPDNQESDQKSDDQKLLAAEENGLERLKRHRVAVAGQVWIPEKWGK
Sbjct: 1   MALLTSPLKPTSPLLPDNQESDQKSDDQKLLAAEENGLERLKRHRVAVAGQVWIPEKWGK 60

Query: 61  EELLKDWIDGSAFEASLFPSGIVSARRALAREAKRSSPNNNSATASAAAGALRILNSC 118
           EELLKDWIDGSAFEASLFPSGIV ARRALAREAKRSSPNNNSATASAAAGALRILNSC
Sbjct: 61  EELLKDWIDGSAFEASLFPSGIVPARRALAREAKRSSPNNNSATASAAAGALRILNSC 118

[Close]

BLAST of Cp4.1LG19g05050 vs. NCBI nr
Match: KAG7027199.1 (Protein BIC1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 220 bits (560), Expect = 6.29e-72
Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 0


Query: 1   MALLTSPLKPTSPLLPDNQESDQKSDDQKLLAAEENGLERLKRHRVAVAGQVWIPEKWGK 60
           MALL SPLKPTSPLLPDNQESDQKSDDQKLLA EENGLERLKRHRVAVAGQVWIPEKWGK
Sbjct: 1   MALLASPLKPTSPLLPDNQESDQKSDDQKLLAPEENGLERLKRHRVAVAGQVWIPEKWGK 60

Query: 61  EELLKDWIDGSAFEASLFPSGIVSARRALAREAKRSSPNNNSATASAAAGALRILNSC 118
           EELLKDWIDGSAFEASLFPSGIVSARRALAREAKRSSPNNNSATASAAAGALRILNSC
Sbjct: 61  EELLKDWIDGSAFEASLFPSGIVSARRALAREAKRSSPNNNSATASAAAGALRILNSC 118

[Close]

BLAST of Cp4.1LG19g05050 vs. NCBI nr
Match: XP_022962648.1 (protein BIC1-like [Cucurbita moschata])

HSP 1 Score: 215 bits (548), Expect = 4.26e-70
Identity = 113/118 (95.76%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 1   MALLTSPLKPTSPLLPDNQESDQKSDDQKLLAAEENGLERLKRHRVAVAGQVWIPEKWGK 60
           MALL SPLKPTSPLLPDNQESDQKSDDQKLLA EENGLERLKRHRVAVAGQVWIPEKWGK
Sbjct: 1   MALLASPLKPTSPLLPDNQESDQKSDDQKLLAPEENGLERLKRHRVAVAGQVWIPEKWGK 60

Query: 61  EELLKDWIDGSAFEASLFPSGIVSARRALAREAKRSSPNNNSATASAAAGALRILNSC 118
           EELLKDWIDGSAFEASLFPSGIVSARRALAREAKRSSPNNNSA ASA AG+LRILNSC
Sbjct: 61  EELLKDWIDGSAFEASLFPSGIVSARRALAREAKRSSPNNNSAAASATAGSLRILNSC 118

[Close]

BLAST of Cp4.1LG19g05050 vs. NCBI nr
Match: XP_038882952.1 (protein BIC2-like [Benincasa hispida])

HSP 1 Score: 150 bits (379), Expect = 3.43e-44
Identity = 93/128 (72.66%), Postives = 99/128 (77.34%), Query Frame = 0


Query: 4   LTSPLKPTSPLLPDN--QESDQK--SDDQ-------KLLAAEENGLERLKRHRVAVAGQV 63
           L SP KP SPL   +  QESDQ    D Q         LA EE+G ERLKRHRVAVAGQV
Sbjct: 3   LPSP-KPNSPLFLHHPLQESDQSRPQDHQTKLDTTSSALAPEESGRERLKRHRVAVAGQV 62

Query: 64  WIPEKWGKEELLKDWIDGSAFEASLFPSGIVSARRALAREAKRSSPNNNSA--TASAAAG 118
           WIP+KWGKEE LKDWIDGSAFEASLFPSGIVSARRALAR+AKR SPNNN+A  TA+A AG
Sbjct: 63  WIPDKWGKEEFLKDWIDGSAFEASLFPSGIVSARRALARDAKRLSPNNNAAATTAAAGAG 122

[Close]

BLAST of Cp4.1LG19g05050 vs. ExPASy TrEMBL
Match: A0A6J1I6F1 (protein BIC1-like OS=Cucurbita maxima OX=3661 GN=LOC111471143 PE=4 SV=1)

HSP 1 Score: 222 bits (565), Expect = 5.26e-73
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 1   MALLTSPLKPTSPLLPDNQESDQKSDDQKLLAAEENGLERLKRHRVAVAGQVWIPEKWGK 60
           MALLTSPLKPTSPLLPDNQESDQKSDDQKLLAAEENGLERLKRHRVAVAGQVWIPEKWGK
Sbjct: 1   MALLTSPLKPTSPLLPDNQESDQKSDDQKLLAAEENGLERLKRHRVAVAGQVWIPEKWGK 60

Query: 61  EELLKDWIDGSAFEASLFPSGIVSARRALAREAKRSSPNNNSATASAAAGALRILNSC 118
           EELLKDWIDGSAFEASLFPSGIV ARRALAREAKRSSPNNNSATASAAAGALRILNSC
Sbjct: 61  EELLKDWIDGSAFEASLFPSGIVPARRALAREAKRSSPNNNSATASAAAGALRILNSC 118

[Close]

BLAST of Cp4.1LG19g05050 vs. ExPASy TrEMBL
Match: A0A6J1HFE1 (protein BIC1-like OS=Cucurbita moschata OX=3662 GN=LOC111463067 PE=4 SV=1)

HSP 1 Score: 215 bits (548), Expect = 2.06e-70
Identity = 113/118 (95.76%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 1   MALLTSPLKPTSPLLPDNQESDQKSDDQKLLAAEENGLERLKRHRVAVAGQVWIPEKWGK 60
           MALL SPLKPTSPLLPDNQESDQKSDDQKLLA EENGLERLKRHRVAVAGQVWIPEKWGK
Sbjct: 1   MALLASPLKPTSPLLPDNQESDQKSDDQKLLAPEENGLERLKRHRVAVAGQVWIPEKWGK 60

Query: 61  EELLKDWIDGSAFEASLFPSGIVSARRALAREAKRSSPNNNSATASAAAGALRILNSC 118
           EELLKDWIDGSAFEASLFPSGIVSARRALAREAKRSSPNNNSA ASA AG+LRILNSC
Sbjct: 61  EELLKDWIDGSAFEASLFPSGIVSARRALAREAKRSSPNNNSAAASATAGSLRILNSC 118

[Close]

BLAST of Cp4.1LG19g05050 vs. ExPASy TrEMBL
Match: A0A5D3C697 (Protein BIC1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001370 PE=4 SV=1)

HSP 1 Score: 140 bits (352), Expect = 2.13e-40
Identity = 81/107 (75.70%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 16  PDNQESDQ---KSDDQKLLAAEENGLERLKRHRVAVAGQVWIPEKWGKEELLKDWIDGSA 75
           P  QESDQ   + D QK L   E+  ERLKRHR+AVAG VWIP+KWGKEE LKDWIDGSA
Sbjct: 20  PHLQESDQTLSEHDPQKGLEEGESSRERLKRHRMAVAGHVWIPDKWGKEEFLKDWIDGSA 79

Query: 76  FEASLFPSGIVSARRALAREAKRSSPNNNSATASA--AAGALRILNS 117
           FEASLFPSGIVSAR ALAR+AKR SPNNN+ATA+A  AAGALRILNS
Sbjct: 80  FEASLFPSGIVSARCALARDAKRLSPNNNTATATATAAAGALRILNS 126

[Close]

BLAST of Cp4.1LG19g05050 vs. ExPASy TrEMBL
Match: A0A0A0KFC4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G452640 PE=4 SV=1)

HSP 1 Score: 134 bits (338), Expect = 2.95e-38
Identity = 86/125 (68.80%), Postives = 95/125 (76.00%), Query Frame = 0


Query: 4   LTSPLKPTSPLLPDN---QESDQ---KSDDQKLLAAE-ENGLERLKRHRVAVAGQVWIPE 63
           L SP   +S  LP +   QESDQ   + D QK L  E E+  ERLKRHR+AVAG VWIP+
Sbjct: 3   LPSPNPNSSLFLPHHPHLQESDQTLSEHDPQKPLEEEDESSRERLKRHRMAVAGHVWIPD 62

Query: 64  KWGKEELLKDWIDGSAFEASLFPSGIVSARRALAREAKRSSPNNNSATASA----AAGAL 117
           KWGKEE LKDWIDGSAFEASLF SGIVSAR ALAR+AKR SPNNN+ATA+A    AAGAL
Sbjct: 63  KWGKEEFLKDWIDGSAFEASLFHSGIVSARCALARDAKRLSPNNNTATAAATATAAAGAL 122

[Close]

BLAST of Cp4.1LG19g05050 vs. ExPASy TrEMBL
Match: A0A5N5I036 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_009271 PE=4 SV=1)

HSP 1 Score: 100 bits (248), Expect = 3.03e-24
Identity = 52/85 (61.18%), Postives = 63/85 (74.12%), Query Frame = 0


Query: 34  EENGLERLKRHRVAVAGQVWIPEKWGKEELLKDWIDGSAFEASLFPSGIVSARRALAREA 93
           EE+GLERLK+HR+ VAGQVWIPE WG+EELL+DWID SAF+ASLFPSGI++AR AL  E 
Sbjct: 87  EESGLERLKKHRMEVAGQVWIPEIWGQEELLQDWIDCSAFDASLFPSGIMTARSALVEEG 146

Query: 94  KRSSPNNNSATASAAAGALRILNSC 118
           +R +           +G LRI N C
Sbjct: 147 RREN-----------SGGLRIENRC 160

[Close]

BLAST of Cp4.1LG19g05050 vs. TAIR 10
Match: AT3G52740.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44450.1); Has 65 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 85.9 bits (211), Expect = 2.4e-17
Identity = 48/101 (47.52%), Postives = 59/101 (58.42%), Query Frame = 0


Query: 9   KPTSPLLPDNQESDQKSDDQKLLAAEE------------NGLERLKRHRVAVAGQVWIPE 68
           K   P LP    S   +D + L   EE             G ERLK+HR  +AG+VWIPE
Sbjct: 26  KQDPPSLPQEAASSVSADKKDLALLEEKPKQSQEEDRVDTGRERLKKHRREIAGRVWIPE 85

Query: 69  KWGKEELLKDWIDGSAFEASLFPSGIVSARRALAREAKRSS 98
            WG+EELLKDWID S F+  L P+GI SAR AL  EA+R++
Sbjct: 86  IWGQEELLKDWIDCSTFDTCLVPAGISSARTALVEEARRAA 126

[Close]

BLAST of Cp4.1LG19g05050 vs. TAIR 10
Match: AT3G44450.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52740.1); Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 4.8e-10
Identity = 42/115 (36.52%), Postives = 60/115 (52.17%), Query Frame = 0


Query: 7   PLKPTSPLLPDNQESDQKSDDQKLLAAEE---NGLERLKRHRVAVAGQVWIPEKWGKEEL 66
           P +   P+ P +    Q     K    E    +G +RLKRHR  VAG+V IP+ WGKE L
Sbjct: 7   PEETKEPISPGSSHRKQNKTGTKTCFPETTVLSGRDRLKRHREEVAGKVPIPDSWGKEGL 66

Query: 67  LKDWIDGSAFEASLFPSGIVSARRALAREAKRSSPNNNSATASAAAGALRILNSC 119
           L  W+D S F+A+   S IVSAR AL  ++      +++    +    LR+ +SC
Sbjct: 67  LMGWMDFSTFDAAFTSSQIVSARAALMADS-----GDDAGARGSRPQRLRVESSC 116

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g05050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LXJ1	3.4e-16	47.52	Protein BIC1 OS=Arabidopsis thaliana OX=3702 GN=BIC1 PE=1 SV=1	[more]
Q9M280	6.8e-09	36.52	Protein BIC2 OS=Arabidopsis thaliana OX=3702 GN=BIC2 PE=1 SV=1	[more]

BLAST of Cp4.1LG19g05050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023518112.1	1.88e-73	100.00	protein BIC1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022972606.1	1.09e-72	99.15	protein BIC1-like [Cucurbita maxima]	[more]
KAG7027199.1	6.29e-72	98.31	Protein BIC1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022962648.1	4.26e-70	95.76	protein BIC1-like [Cucurbita moschata]	[more]
XP_038882952.1	3.43e-44	72.66	protein BIC2-like [Benincasa hispida]	[more]

BLAST of Cp4.1LG19g05050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I6F1	5.26e-73	99.15	protein BIC1-like OS=Cucurbita maxima OX=3661 GN=LOC111471143 PE=4 SV=1	[more]
A0A6J1HFE1	2.06e-70	95.76	protein BIC1-like OS=Cucurbita moschata OX=3662 GN=LOC111463067 PE=4 SV=1	[more]
A0A5D3C697	2.13e-40	75.70	Protein BIC1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KFC4	2.95e-38	68.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G452640 PE=4 SV=1	[more]
A0A5N5I036	3.03e-24	61.18	Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867...	[more]

BLAST of Cp4.1LG19g05050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52740.1	2.4e-17	47.52	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G44450.1	4.8e-10	36.52	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR34207:SF2	PROTEIN BIC1	coord: 18..118
IPR040374	Protein BIC	PANTHER	PTHR34207	PROTEIN BIC1	coord: 18..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG19g05050.1	Cp4.1LG19g05050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009785	blue light signaling pathway