Cp4.1LG19g04920 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG19g04920
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Small nuclear ribonucleoprotein G
Location	Cp4.1LG19: 4151921 .. 4154377 (-)
RNA-Seq Expression	Cp4.1LG19g04920
Synteny	Cp4.1LG19g04920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTCACTTGGTGAACAAAATTCGAGGACTCGCAAAGACCTGCTGCTCGATTGATTAGGGTTTTTCCTTCTTCTGATCACTGTTCTACCAAAACCTCTTCCCATCTCTCGTTCTTCACCATGAGTAGGTCAGGCCAGCCTCCAGATCTTAAAAAGTAAGTGCTGCCCCTAAATTTTATCCTGTTCGGTGTATTTTTGGTTCGATTATTTCAACTTTTTTTATCCTTTGTCCTCATTTTTCCCTTCTTTGTGCAGATACATGGACAAGAAGCTTCAGAGTAAGTTCTGTTCCTCACGAGCTTGTTTATCTTATTCGTTGTCGCACCGTTTAGGTTCTGGAAAATTTGGTTTGGAAATGACAATTTGTTATTCTGAAAGTCGAGAATCCGTCAATTCTGTTCGTTTTCTTTGAAGTTATGCCATCTGATTTATAATTTCGTTTGTTGATTAGTGTTTGTAATGTGAGGAACCTGAAGTTGACTCTTCCTAGTTTAGTACCTATGTTAAGATACGAAACTGTTTGGAGACGAACGGAAGAAGGATTGGGCTTTAGAGTTAGATTATATGGTGTTGAGAATTGTTGGGAGGGAGTCCGACGTTGACTAATTAAGGGATGATCATGGGTTTAAGTAAGGAATATACCTCCATTGGTATGAGCCATTTCAGGGAAACCAAAACCAAAGCCATGAGAGCTTATTCTCAAAGTGGATAATATCATACCATTGTGGAGGTTCGTAGTTCCTAACATGGTACCAGAGCCATGCCTTTAACTTAGCCATGTCAATAAAATCCTCAAGTGTCGAACAAAGAAGTTGCTAACCTTGAATATGTAGTCAAAAGTGACTCAAGTGTCGAACAAAGGGTGTACTTTGTTCGAGGGCTCCTGAGAAAGGAGTCAAGCCTCAATTAAGGGGAGACTGTTTGAGGGCTACATAGGCCTTAGGGGAGGTTTTATGGTGTACTTTATTTGTAGGGAGGATTGTTGAGGATTGTTGGGAGGGGAGGGAGTCCGACATTGGCTAATTAAGGGGATGATCATGGGTTTATAAAGTAAGAAATACATCTCCATTGATATGAGATCTTTTCCGGAAACTAAAAGCAAAGCCATGAGAGTTCATGCGCAAAGTAGTCAATGTCATACCATTGTGGGGGTCTGTGGTTCCTAACGTATAGTACCAAAGGTTGACCATTTTTCTTTTTGTGATGATAGAGACCTAAATCTCACCGTATATCTATCTGCTACATTTGGTTGATTATATCCTAGGTAGGTGGAGACAATCCCATGATTGCTGAGAGACCTAACTTCTAGATAATCTTCCAAAATAAATGGTCATTGAGGCAGCTTTCTTCATTAGGTTGAACATTAGTTTTTCAGTCATTGCATGTATAATCCTGAAATTAAAGAAATCTCACACTTCAGAAAGTTTTGTTTACAAATTGATGTTGCTTCTGAATTACAATTTGCAGTAAAAATGAATGCTAATCGCTTGGTAGTTGGAACTCTTCGTGGGTTTGACCAATTTATGAATCTAGTCGTTGACAACACCGTGGAAGTGAACGGTAACGAGAAAACCGATATCGGCATGGTGGTGCGTGTGATTTTGCAATCAAATTCTTCTCTATGTTTGTTTGCTTAAATTGATAACCACTGATAGAGTTCAAGAATTGATTTCCCTTATTGGTTTCCATTTCAGGTGATTAGGGGCAATAGCGTGGTAACCGTTGAAGCACTTGAACCTGTAAACAGGATGCAGTGATGGTGCACGCGTTGGAATTTGCTGCTCTGTTTCATAGATTGAGTGAGTAAAACATTCGGAACTGTTGCATTTATAATTTTGGGATGTTACGAATATCAGATGGATTTCTTGTGCTGCCATCATTCTGAACACCTGGCTTATTAATTTCAGCGATGGGGTTTCTGTATTTTGGATTCAATTACCTTGCAAATCTTAGTGTATGAAACCCATCGTATCACTTGAAGATGTGTTCATTAATCCCATTACAGAGGACCCGAAAAGAAGAAATAGTTTCAACCCAGTTTGTATCAAGTCCCAACTTCAATTTACATAGCTTTTCATTCCGAGTTTTTTCGAGTTTTTCACTGAATGAGAGTCGGGATTACGATGTAATCCTTAGAACTTTTTGTAGTAGTCGTACTTCCATCTTGCAGGAACGTCCGGGAAGGAGTTTAGCATTACTCTATCTGCACGACAAAACCGTCGTGCAGGAATTGTCCGAGCTCTTCTAGTCCGAAGAAGAAGATGGTCCAAAGGTCAAACATTCCCATTGACTTTTCCATGAAATCAGGCTGTTGTTTCTTCATGGGCAAGTGCAACTGCCTGGGAAGTCTTTTAGCATTTAGCCATTGAAAAGTCTTAAACCCAAAACATTATTCTACTTTTCTTTGATTCCCAAAGGTTAGGTCTAAGATAAGTTAGTATGAATTATTCATATTATA

mRNA sequence

GTGTCACTTGGTGAACAAAATTCGAGGACTCGCAAAGACCTGCTGCTCGATTGATTAGGGTTTTTCCTTCTTCTGATCACTGTTCTACCAAAACCTCTTCCCATCTCTCGTTCTTCACCATGAGTAGGTCAGGCCAGCCTCCAGATCTTAAAAAATACATGGACAAGAAGCTTCAGATAAAAATGAATGCTAATCGCTTGGTAGTTGGAACTCTTCGTGGGTTTGACCAATTTATGAATCTAGTCGTTGACAACACCGTGGAAGTGAACGGTAACGAGAAAACCGATATCGGCATGGTGGTGATTAGGGGCAATAGCGTGGTAACCGTTGAAGCACTTGAACCTGTAAACAGGATGCAGTGATGGTGCACGCGTTGGAATTTGCTGCTCTGTTTCATAGATTGACGATGGGGTTTCTGTATTTTGGATTCAATTACCTTGCAAATCTTAGTGTATGAAACCCATCGTATCACTTGAAGATGTGTTCATTAATCCCATTACAGAGGACCCGAAAAGAAGAAATAGTTTCAACCCAGTTTGTATCAAGTCCCAACTTCAATTTACATAGCTTTTCATTCCGAGTTTTTTCGAGTTTTTCACTGAATGAGAGTCGGGATTACGATGTAATCCTTAGAACTTTTTGTAGTAGTCGTACTTCCATCTTGCAGGAACGTCCGGGAAGGAGTTTAGCATTACTCTATCTGCACGACAAAACCGTCGTGCAGGAATTGTCCGAGCTCTTCTAGTCCGAAGAAGAAGATGGTCCAAAGGTCAAACATTCCCATTGACTTTTCCATGAAATCAGGCTGTTGTTTCTTCATGGGCAAGTGCAACTGCCTGGGAAGTCTTTTAGCATTTAGCCATTGAAAAGTCTTAAACCCAAAACATTATTCTACTTTTCTTTGATTCCCAAAGGTTAGGTCTAAGATAAGTTAGTATGAATTATTCATATTATA

Coding sequence (CDS)

ATGAGTAGGTCAGGCCAGCCTCCAGATCTTAAAAAATACATGGACAAGAAGCTTCAGATAAAAATGAATGCTAATCGCTTGGTAGTTGGAACTCTTCGTGGGTTTGACCAATTTATGAATCTAGTCGTTGACAACACCGTGGAAGTGAACGGTAACGAGAAAACCGATATCGGCATGGTGGTGATTAGGGGCAATAGCGTGGTAACCGTTGAAGCACTTGAACCTGTAAACAGGATGCAGTGA

Protein sequence

MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

Homology

[Close]

BLAST of Cp4.1LG19g04920 vs. ExPASy Swiss-Prot
Match: O82221 (Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana OX=3702 GN=At2g23930 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-34
Identity = 72/78 (92.31%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNR 79
          VIRGNS+VTVEALEPV R
Sbjct: 61 VIRGNSIVTVEALEPVGR 78

[Close]

BLAST of Cp4.1LG19g04920 vs. ExPASy Swiss-Prot
Match: P24715 (Probable small nuclear ribonucleoprotein G OS=Medicago sativa OX=3879 GN=C29 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 7.3e-31
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MS SGQPP LKKYMDK+LQI + ANR++VGTLRGFDQFMNLVVDNTVEVNGNEK DIGMV
Sbjct: 1  MSTSGQPPALKKYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60

Query: 61 VIRGNSVVTVEALEPV 77
          VIRGNSVVTVEALEPV
Sbjct: 61 VIRGNSVVTVEALEPV 76

[Close]

BLAST of Cp4.1LG19g04920 vs. ExPASy Swiss-Prot
Match: Q9VXE0 (Probable small nuclear ribonucleoprotein G OS=Drosophila melanogaster OX=7227 GN=SNRPG PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.5e-17
Identity = 44/71 (61.97%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 7  PPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTV-EVNGNEKTDIGMVVIRGN 66
          PP++KKYMDK++ +K+N  R V G LRGFD FMN+V+D+TV E   N K +IGMVVIRGN
Sbjct: 6  PPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGN 65

Query: 67 SVVTVEALEPV 77
          S+V VEAL+ V
Sbjct: 66 SIVMVEALDRV 76

[Close]

BLAST of Cp4.1LG19g04920 vs. ExPASy Swiss-Prot
Match: Q3ZBL0 (Small nuclear ribonucleoprotein G OS=Bos taurus OX=9913 GN=SNRPG PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.3e-16
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 7  PPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGN 66
          PP+LKK+MDKKL +K+N  R V G LRGFD FMNLV+D  VE+    ++ +IGMVVIRGN
Sbjct: 6  PPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGN 65

Query: 67 SVVTVEALEPV 77
          S++ +EALE V
Sbjct: 66 SIIMLEALERV 76

[Close]

BLAST of Cp4.1LG19g04920 vs. ExPASy Swiss-Prot
Match: P62308 (Small nuclear ribonucleoprotein G OS=Homo sapiens OX=9606 GN=SNRPG PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.3e-16
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 7  PPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGN 66
          PP+LKK+MDKKL +K+N  R V G LRGFD FMNLV+D  VE+    ++ +IGMVVIRGN
Sbjct: 6  PPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGN 65

Query: 67 SVVTVEALEPV 77
          S++ +EALE V
Sbjct: 66 SIIMLEALERV 76

[Close]

BLAST of Cp4.1LG19g04920 vs. NCBI nr
Match: XP_023517274.1 (probable small nuclear ribonucleoprotein G [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156 bits (395), Expect = 5.94e-48
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 80
          VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 VIRGNSVVTVEALEPVNRMQ 80

[Close]

BLAST of Cp4.1LG19g04920 vs. NCBI nr
Match: XP_004143329.1 (probable small nuclear ribonucleoprotein G [Cucumis sativus] >XP_008462580.1 PREDICTED: probable small nuclear ribonucleoprotein G [Cucumis melo] >XP_038881248.1 probable small nuclear ribonucleoprotein G [Benincasa hispida] >KAA0025250.1 putative small nuclear ribonucleoprotein G [Cucumis melo var. makuwa] >KGN48269.1 hypothetical protein Csa_004211 [Cucumis sativus] >TYK07417.1 putative small nuclear ribonucleoprotein G [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (391), Expect = 2.42e-47
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 80
          VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 VIRGNSVVTVEALEPVNRMQ 80

[Close]

BLAST of Cp4.1LG19g04920 vs. NCBI nr
Match: XP_022962865.1 (probable small nuclear ribonucleoprotein G [Cucurbita moschata] >XP_022972620.1 probable small nuclear ribonucleoprotein G [Cucurbita maxima] >KAG7027195.1 putative small nuclear ribonucleoprotein G, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 155 bits (391), Expect = 2.42e-47
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKT+IGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 80
          VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 VIRGNSVVTVEALEPVNRMQ 80

[Close]

BLAST of Cp4.1LG19g04920 vs. NCBI nr
Match: KAG6595179.1 (putative small nuclear ribonucleoprotein G, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 155 bits (391), Expect = 8.21e-47
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1   MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
           MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKT+IGMV
Sbjct: 41  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMV 100

Query: 61  VIRGNSVVTVEALEPVNRMQ 80
           VIRGNSVVTVEALEPVNRMQ
Sbjct: 101 VIRGNSVVTVEALEPVNRMQ 120

[Close]

BLAST of Cp4.1LG19g04920 vs. NCBI nr
Match: XP_012468163.1 (PREDICTED: probable small nuclear ribonucleoprotein G [Gossypium raimondii] >XP_016711763.1 probable small nuclear ribonucleoprotein G [Gossypium hirsutum] >XP_016714896.1 probable small nuclear ribonucleoprotein G [Gossypium hirsutum] >XP_017622516.1 PREDICTED: probable small nuclear ribonucleoprotein G [Gossypium arboreum] >KAB2046411.1 hypothetical protein ES319_D01G232600v1 [Gossypium barbadense] >KAG8504063.1 hypothetical protein CXB51_002398 [Gossypium anomalum] >TYG84423.1 hypothetical protein ES288_D01G249100v1 [Gossypium darwinii] >TYH89319.1 hypothetical protein ES332_D01G251700v1 [Gossypium tomentosum] >TYI98777.1 hypothetical protein E1A91_D01G240600v1 [Gossypium mustelinum])

HSP 1 Score: 153 bits (386), Expect = 1.40e-46
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 80
          VIRGNSVVTVEALEPV RMQ
Sbjct: 61 VIRGNSVVTVEALEPVGRMQ 80

[Close]

BLAST of Cp4.1LG19g04920 vs. ExPASy TrEMBL
Match: A0A5D3C6A2 (Small nuclear ribonucleoprotein G OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001440 PE=3 SV=1)

HSP 1 Score: 155 bits (391), Expect = 1.17e-47
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 80
          VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 VIRGNSVVTVEALEPVNRMQ 80

[Close]

BLAST of Cp4.1LG19g04920 vs. ExPASy TrEMBL
Match: A0A6J1I955 (Small nuclear ribonucleoprotein G OS=Cucurbita maxima OX=3661 GN=LOC111471160 PE=3 SV=1)

HSP 1 Score: 155 bits (391), Expect = 1.17e-47
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKT+IGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 80
          VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 VIRGNSVVTVEALEPVNRMQ 80

[Close]

BLAST of Cp4.1LG19g04920 vs. ExPASy TrEMBL
Match: A0A0A0KHH9 (Small nuclear ribonucleoprotein G OS=Cucumis sativus OX=3659 GN=Csa_6G452700 PE=3 SV=1)

HSP 1 Score: 155 bits (391), Expect = 1.17e-47
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 80
          VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 VIRGNSVVTVEALEPVNRMQ 80

[Close]

BLAST of Cp4.1LG19g04920 vs. ExPASy TrEMBL
Match: A0A6J1HGA2 (Small nuclear ribonucleoprotein G OS=Cucurbita moschata OX=3662 GN=LOC111463232 PE=3 SV=1)

HSP 1 Score: 155 bits (391), Expect = 1.17e-47
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKT+IGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 80
          VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 VIRGNSVVTVEALEPVNRMQ 80

[Close]

BLAST of Cp4.1LG19g04920 vs. ExPASy TrEMBL
Match: A0A1S3CHS7 (Small nuclear ribonucleoprotein G OS=Cucumis melo OX=3656 GN=LOC103500906 PE=3 SV=1)

HSP 1 Score: 155 bits (391), Expect = 1.17e-47
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNRMQ 80
          VIRGNSVVTVEALEPVNRMQ
Sbjct: 61 VIRGNSVVTVEALEPVNRMQ 80

[Close]

BLAST of Cp4.1LG19g04920 vs. TAIR 10
Match: AT2G23930.1 (probable small nuclear ribonucleoprotein G )

HSP 1 Score: 146.7 bits (369), Expect = 7.7e-36
Identity = 72/78 (92.31%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNR 79
          VIRGNS+VTVEALEPV R
Sbjct: 61 VIRGNSIVTVEALEPVGR 78

[Close]

BLAST of Cp4.1LG19g04920 vs. TAIR 10
Match: AT3G11500.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 146.4 bits (368), Expect = 1.0e-35
Identity = 72/78 (92.31%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMV 60
          MSRSGQPPDLKKYMDKKLQIK+NANR+VVGTLRGFDQFMNLVVDNTVEVNG++KTDIGMV
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDIGMV 60

Query: 61 VIRGNSVVTVEALEPVNR 79
          VIRGNS+VTVEALEPV R
Sbjct: 61 VIRGNSIVTVEALEPVGR 78

[Close]

BLAST of Cp4.1LG19g04920 vs. TAIR 10
Match: AT2G23930.2 (probable small nuclear ribonucleoprotein G )

HSP 1 Score: 119.8 bits (299), Expect = 1.0e-27
Identity = 59/65 (90.77%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 14 MDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEAL 73
          MDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEAL
Sbjct: 1  MDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSIVTVEAL 60

Query: 74 EPVNR 79
          EPV R
Sbjct: 61 EPVGR 65

[Close]

BLAST of Cp4.1LG19g04920 vs. TAIR 10
Match: AT2G03870.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 52.8 bits (125), Expect = 1.5e-07
Identity = 27/71 (38.03%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 9  DLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGM 68
          DL K++DK +Q+K+   R V GTL+G+DQ +NLV+D  VE            ++   +G+
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGL 69

Query: 69 VVIRGNSVVTV 71
          +V RG +V+ V
Sbjct: 70 IVCRGTAVMLV 80

[Close]

BLAST of Cp4.1LG19g04920 vs. TAIR 10
Match: AT2G03870.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 52.8 bits (125), Expect = 1.5e-07
Identity = 27/71 (38.03%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 9  DLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGM 68
          DL K++DK +Q+K+   R V GTL+G+DQ +NLV+D  VE            ++   +G+
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGL 69

Query: 69 VVIRGNSVVTV 71
          +V RG +V+ V
Sbjct: 70 IVCRGTAVMLV 80

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g04920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82221	1.1e-34	92.31	Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
P24715	7.3e-31	88.16	Probable small nuclear ribonucleoprotein G OS=Medicago sativa OX=3879 GN=C29 PE=...	[more]
Q9VXE0	3.5e-17	61.97	Probable small nuclear ribonucleoprotein G OS=Drosophila melanogaster OX=7227 GN...	[more]
Q3ZBL0	2.3e-16	60.56	Small nuclear ribonucleoprotein G OS=Bos taurus OX=9913 GN=SNRPG PE=3 SV=1	[more]
P62308	2.3e-16	60.56	Small nuclear ribonucleoprotein G OS=Homo sapiens OX=9606 GN=SNRPG PE=1 SV=1	[more]

BLAST of Cp4.1LG19g04920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023517274.1	5.94e-48	100.00	probable small nuclear ribonucleoprotein G [Cucurbita pepo subsp. pepo]	[more]
XP_004143329.1	2.42e-47	97.50	probable small nuclear ribonucleoprotein G [Cucumis sativus] >XP_008462580.1 PRE...	[more]
XP_022962865.1	2.42e-47	98.75	probable small nuclear ribonucleoprotein G [Cucurbita moschata] >XP_022972620.1 ...	[more]
KAG6595179.1	8.21e-47	98.75	putative small nuclear ribonucleoprotein G, partial [Cucurbita argyrosperma subs...	[more]
XP_012468163.1	1.40e-46	97.50	PREDICTED: probable small nuclear ribonucleoprotein G [Gossypium raimondii] >XP_...	[more]

BLAST of Cp4.1LG19g04920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C6A2	1.17e-47	97.50	Small nuclear ribonucleoprotein G OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1I955	1.17e-47	98.75	Small nuclear ribonucleoprotein G OS=Cucurbita maxima OX=3661 GN=LOC111471160 PE...	[more]
A0A0A0KHH9	1.17e-47	97.50	Small nuclear ribonucleoprotein G OS=Cucumis sativus OX=3659 GN=Csa_6G452700 PE=...	[more]
A0A6J1HGA2	1.17e-47	98.75	Small nuclear ribonucleoprotein G OS=Cucurbita moschata OX=3662 GN=LOC111463232 ...	[more]
A0A1S3CHS7	1.17e-47	97.50	Small nuclear ribonucleoprotein G OS=Cucumis melo OX=3656 GN=LOC103500906 PE=3 S...	[more]

BLAST of Cp4.1LG19g04920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G23930.1	7.7e-36	92.31	probable small nuclear ribonucleoprotein G	[more]
AT3G11500.1	1.0e-35	92.31	Small nuclear ribonucleoprotein family protein	[more]
AT2G23930.2	1.0e-27	90.77	probable small nuclear ribonucleoprotein G	[more]
AT2G03870.2	1.5e-07	38.03	Small nuclear ribonucleoprotein family protein	[more]
AT2G03870.1	1.5e-07	38.03	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 8..72 e-value: 4.8E-23 score: 92.6
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 9..71 e-value: 1.6E-21 score: 75.7
None	No IPR available	GENE3D	2.30.30.100		coord: 1..79 e-value: 1.7E-24 score: 87.7
None	No IPR available	PIRSF	PIRSF037188	Lsm7	coord: 5..80 e-value: 2.0E-18 score: 64.3
None	No IPR available	PANTHER	PTHR10553:SF29	SMALL NUCLEAR RIBONUCLEOPROTEIN G	coord: 1..78
IPR044641	Sm-like protein Lsm7/SmG	PANTHER	PTHR10553	SMALL NUCLEAR RIBONUCLEOPROTEIN	coord: 1..78
IPR034098	Small nuclear ribonucleoprotein G	CDD	cd01719	Sm_G	coord: 6..74 e-value: 1.33095E-38 score: 120.699
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 8..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG19g04920.1	Cp4.1LG19g04920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000387	spliceosomal snRNP assembly
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0043186	P granule
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0034719	SMN-Sm protein complex
cellular_component	GO:0097526	spliceosomal tri-snRNP complex
cellular_component	GO:0005689	U12-type spliceosomal complex
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0071004	U2-type prespliceosome
cellular_component	GO:0005687	U4 snRNP
cellular_component	GO:0005682	U5 snRNP
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003723	RNA binding