Cp4.1LG19g03580 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG19g03580
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RAB6-interacting golgin
Location	Cp4.1LG19: 4039515 .. 4040994 (-)
RNA-Seq Expression	Cp4.1LG19g03580
Synteny	Cp4.1LG19g03580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACAAAAAGGAAAGAAAAATGAGCAGCCCATGAAAGGAAAGGGAAGGGAGTTCATAGTTCATTCATACAACCAACAAAGAGACAAGAACGCTTCCTCTCAAAAAATCGAGAGAAAAAGTTGAAGATGCAGCAGGCGGAGCAAAATCCACAGCACCAGCAGCTTCAATTGATGTTACAGAATTCTGGAAATTTTAGTTTCAGTAGCAAAGACGATGAAGAGATGTCCAAATCGGCGCTTTCGGCTTTTAGGGAGAAGGAAGAGGAGATCGAGCGGATGAGGACCGAAGTTCAGCAGAAACTTCAAGCTCGACTCGGCCGTGTCGAGGAAGAAAACAGGCGTTTGGCTTCCATTCGAGAGGTCTTCTCTTTCCTTACACATAAACCCTAACTAATTAACTCTTCGTTTTTCTTTTCTCTGTTTCATCTCTGCAATAACTGCTATCAATTTCTAATTTCTTTCCGGAATTCTTTTCAATTTTGCGAAATTCAACATCTGACCTAGAAATTCTTCTGCTGCTAGTTTGCGCTTTCCGAAATCGAATCGAAACCCCTAAATTCAACCGCTAAATCGTACTTCATTCTTTATTACCTTAAATTACAAGTAGACTAGTAGTTAGGATGACTGGATAAAGAATTTAATAGCCTGAAGGGAATCATGAACAGGAACTTGAAGCAATAGCGGATCCAATGAGGAAAGAAATCGGACAGATTCGTAAGAGAATTGATGCAGTAAACAAGGAATTAAAACCACTAGGACAAACATGCCAAAAAAGGGTAATCCCCTTTTTTCTTCTTACAATCTTTCTCACAAGTTAATCCAAAGAGACAAACATTTTTGAAACCTTTTAAGATCTGGAATTGTGGTGTATAACAGGAGAAAGAATACAAAGATGCCCTTGATGCCTTCAATGAAAAGAACAGCGAGAAAGTACAATTAGTATCAAAACTAATGGAGGTTAGTCTCATAAATTCTGAAATTCTCTCTTCTAGGAACATTGAATTTAATATGAACACAGAGGTATTGTTTGTTGTGATTATGATGATATTAGATGGTTGGTGAAAGTGAAAGGCTGAGGCTGAGGAGGTTGGAAGAACTGAGTAAGCATGTGGACAACACTTCCTAATTTGATTCATCTGTTTGTAGCCCTTTGTGGTATGTGCTTAACTCTCTGTCTATGTCTGTATTATGGGTGTTTTACTTTAACCACTGTCTTATATTTTGATTTCATTTTGGTTTAGTTTACTTCACTTGAACCAACATTCATAACTTAGGGTAACCACTGTCTTATATGTATGTATTGCTTTTAACTAATACAAAGATATATTGTATTTAAACTTTTCATCATTTGCCATGCATTCTTTAGAAAACATATAGAATTTGATATACAAAGTATTCCATTTCTTTATTTTTCCCTCGGTTTTGGTTTGTTTGATGAGCTCGAGTGGATCGGTTCATACACAAATTACCATTTTAAAGG

mRNA sequence

AAAACAAAAAGGAAAGAAAAATGAGCAGCCCATGAAAGGAAAGGGAAGGGAGTTCATAGTTCATTCATACAACCAACAAAGAGACAAGAACGCTTCCTCTCAAAAAATCGAGAGAAAAAGTTGAAGATGCAGCAGGCGGAGCAAAATCCACAGCACCAGCAGCTTCAATTGATGTTACAGAATTCTGGAAATTTTAGTTTCAGTAGCAAAGACGATGAAGAGATGTCCAAATCGGCGCTTTCGGCTTTTAGGGAGAAGGAAGAGGAGATCGAGCGGATGAGGACCGAAGTTCAGCAGAAACTTCAAGCTCGACTCGGCCGTGTCGAGGAAGAAAACAGGCGTTTGGCTTCCATTCGAGAGGAACTTGAAGCAATAGCGGATCCAATGAGGAAAGAAATCGGACAGATTCGTAAGAGAATTGATGCAGTAAACAAGGAATTAAAACCACTAGGACAAACATGCCAAAAAAGGGAGAAAGAATACAAAGATGCCCTTGATGCCTTCAATGAAAAGAACAGCGAGAAAGTACAATTAGTATCAAAACTAATGGAGATGGTTGGTGAAAGTGAAAGGCTGAGGCTGAGGAGGTTGGAAGAACTGAGTAAGCATGTGGACAACACTTCCTAATTTGATTCATCTGTTTGTAGCCCTTTGTGGTATGTGCTTAACTCTCTGTCTATGTCTGTATTATGGGTGTTTTACTTTAACCACTGTCTTATATTTTGATTTCATTTTGGTTTAGTTTACTTCACTTGAACCAACATTCATAACTTAGGGTAACCACTGTCTTATATGTATGTATTGCTTTTAACTAATACAAAGATATATTGTATTTAAACTTTTCATCATTTGCCATGCATTCTTTAGAAAACATATAGAATTTGATATACAAAGTATTCCATTTCTTTATTTTTCCCTCGGTTTTGGTTTGTTTGATGAGCTCGAGTGGATCGGTTCATACACAAATTACCATTTTAAAGG

Coding sequence (CDS)

ATGCAGCAGGCGGAGCAAAATCCACAGCACCAGCAGCTTCAATTGATGTTACAGAATTCTGGAAATTTTAGTTTCAGTAGCAAAGACGATGAAGAGATGTCCAAATCGGCGCTTTCGGCTTTTAGGGAGAAGGAAGAGGAGATCGAGCGGATGAGGACCGAAGTTCAGCAGAAACTTCAAGCTCGACTCGGCCGTGTCGAGGAAGAAAACAGGCGTTTGGCTTCCATTCGAGAGGAACTTGAAGCAATAGCGGATCCAATGAGGAAAGAAATCGGACAGATTCGTAAGAGAATTGATGCAGTAAACAAGGAATTAAAACCACTAGGACAAACATGCCAAAAAAGGGAGAAAGAATACAAAGATGCCCTTGATGCCTTCAATGAAAAGAACAGCGAGAAAGTACAATTAGTATCAAAACTAATGGAGATGGTTGGTGAAAGTGAAAGGCTGAGGCTGAGGAGGTTGGAAGAACTGAGTAAGCATGTGGACAACACTTCCTAA

Protein sequence

MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRTEVQQKLQARLGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQKREKEYKDALDAFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS

Homology

[Close]

BLAST of Cp4.1LG19g03580 vs. ExPASy Swiss-Prot
Match: B1H222 (RAB6-interacting golgin OS=Rattus norvegicus OX=10116 GN=Gorab PE=2 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 3.2e-04
Identity = 36/122 (29.51%), Postives = 62/122 (50.82%), Query Frame = 0


Query: 42  REKEEEIERMRTEVQQKLQARLGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAV 101
           R  EE+ +R +  + Q +  R  R + E  +L  I++EL+A+ D +  +IG +R RID  
Sbjct: 154 RLMEEKNKRKKALLAQAIAERSRRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQA 213

Query: 102 NKELKPLGQTCQKREKEYKDALDAFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKH 161
           + E     +   + E EY  A      K   K QL   L  ++ ++E  + ++LEEL + 
Sbjct: 214 SLEYSYARKRFDRAEAEYVTAKLDLQRKTETKEQLTEHLCTIIQQNELRKAQKLEELMRQ 273

Query: 162 VD 164
           +D
Sbjct: 274 LD 275

[Close]

BLAST of Cp4.1LG19g03580 vs. NCBI nr
Match: XP_023517191.1 (uncharacterized protein KIAA1211-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 291 bits (746), Expect = 9.73e-99
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRTEVQQKLQ 60
           MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRTEVQQKLQ
Sbjct: 1   MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRTEVQQKLQ 60

Query: 61  ARLGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQKREKEYK 120
           ARLGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQKREKEYK
Sbjct: 61  ARLGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQKREKEYK 120

Query: 121 DALDAFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 166
           DALDAFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS
Sbjct: 121 DALDAFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 166

[Close]

BLAST of Cp4.1LG19g03580 vs. NCBI nr
Match: XP_022962812.1 (uncharacterized protein KIAA1211-like [Cucurbita moschata])

HSP 1 Score: 290 bits (742), Expect = 3.96e-98
Identity = 165/166 (99.40%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRTEVQQKLQ 60
           MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRTEVQQKLQ
Sbjct: 1   MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRTEVQQKLQ 60

Query: 61  ARLGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQKREKEYK 120
           ARLGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQKREKEYK
Sbjct: 61  ARLGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQKREKEYK 120

Query: 121 DALDAFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 166
           DAL+AFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS
Sbjct: 121 DALEAFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 166

[Close]

BLAST of Cp4.1LG19g03580 vs. NCBI nr
Match: KAG6595202.1 (hypothetical protein SDJN03_11755, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027224.1 hypothetical protein SDJN02_11235 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 290 bits (741), Expect = 5.63e-98
Identity = 165/166 (99.40%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRTEVQQKLQ 60
           MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMR EVQQKLQ
Sbjct: 1   MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQ 60

Query: 61  ARLGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQKREKEYK 120
           ARLGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQKREKEYK
Sbjct: 61  ARLGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQKREKEYK 120

Query: 121 DALDAFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 166
           DALDAFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS
Sbjct: 121 DALDAFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 166

[Close]

BLAST of Cp4.1LG19g03580 vs. NCBI nr
Match: XP_022972692.1 (uncharacterized protein KIAA1211-like [Cucurbita maxima])

HSP 1 Score: 288 bits (738), Expect = 1.61e-97
Identity = 164/166 (98.80%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRTEVQQKLQ 60
           MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMR EVQQKLQ
Sbjct: 1   MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQ 60

Query: 61  ARLGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQKREKEYK 120
           ARLGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQK+EKEYK
Sbjct: 61  ARLGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQKKEKEYK 120

Query: 121 DALDAFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 166
           DALDAFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS
Sbjct: 121 DALDAFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 166

[Close]

BLAST of Cp4.1LG19g03580 vs. NCBI nr
Match: XP_022143816.1 (uncharacterized protein LOC111013636 [Momordica charantia])

HSP 1 Score: 246 bits (627), Expect = 1.16e-80
Identity = 141/164 (85.98%), Postives = 151/164 (92.07%), Query Frame = 0


Query: 3   QAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRTEVQQKLQAR 62
           Q EQN Q     LMLQNSGN SFSSK+DEEMSKSALSAFREKEEEIERMR ++Q KLQAR
Sbjct: 4   QGEQNQQ-----LMLQNSGNLSFSSKEDEEMSKSALSAFREKEEEIERMRIQIQHKLQAR 63

Query: 63  LGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQKREKEYKDA 122
           LGRVEEE RRL+SIREELEAI DP RKEIGQIRK+IDAVNKELKPLGQTCQK+EKEYKDA
Sbjct: 64  LGRVEEETRRLSSIREELEAIGDPTRKEIGQIRKKIDAVNKELKPLGQTCQKKEKEYKDA 123

Query: 123 LDAFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 166
           LDAFNEKN+EKVQL+SKLMEMVGESERLR++RLEELSKHVDNTS
Sbjct: 124 LDAFNEKNNEKVQLISKLMEMVGESERLRMKRLEELSKHVDNTS 162

[Close]

BLAST of Cp4.1LG19g03580 vs. ExPASy TrEMBL
Match: A0A6J1HDL2 (RAB6-interacting golgin OS=Cucurbita moschata OX=3662 GN=LOC111463194 PE=3 SV=1)

HSP 1 Score: 290 bits (742), Expect = 1.92e-98
Identity = 165/166 (99.40%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRTEVQQKLQ 60
           MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRTEVQQKLQ
Sbjct: 1   MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRTEVQQKLQ 60

Query: 61  ARLGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQKREKEYK 120
           ARLGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQKREKEYK
Sbjct: 61  ARLGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQKREKEYK 120

Query: 121 DALDAFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 166
           DAL+AFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS
Sbjct: 121 DALEAFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 166

[Close]

BLAST of Cp4.1LG19g03580 vs. ExPASy TrEMBL
Match: A0A6J1I5J6 (RAB6-interacting golgin OS=Cucurbita maxima OX=3661 GN=LOC111471218 PE=3 SV=1)

HSP 1 Score: 288 bits (738), Expect = 7.81e-98
Identity = 164/166 (98.80%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRTEVQQKLQ 60
           MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMR EVQQKLQ
Sbjct: 1   MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQ 60

Query: 61  ARLGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQKREKEYK 120
           ARLGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQK+EKEYK
Sbjct: 61  ARLGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQKKEKEYK 120

Query: 121 DALDAFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 166
           DALDAFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS
Sbjct: 121 DALDAFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 166

[Close]

BLAST of Cp4.1LG19g03580 vs. ExPASy TrEMBL
Match: A0A6J1CRG0 (RAB6-interacting golgin OS=Momordica charantia OX=3673 GN=LOC111013636 PE=3 SV=1)

HSP 1 Score: 246 bits (627), Expect = 5.60e-81
Identity = 141/164 (85.98%), Postives = 151/164 (92.07%), Query Frame = 0


Query: 3   QAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRTEVQQKLQAR 62
           Q EQN Q     LMLQNSGN SFSSK+DEEMSKSALSAFREKEEEIERMR ++Q KLQAR
Sbjct: 4   QGEQNQQ-----LMLQNSGNLSFSSKEDEEMSKSALSAFREKEEEIERMRIQIQHKLQAR 63

Query: 63  LGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQKREKEYKDA 122
           LGRVEEE RRL+SIREELEAI DP RKEIGQIRK+IDAVNKELKPLGQTCQK+EKEYKDA
Sbjct: 64  LGRVEEETRRLSSIREELEAIGDPTRKEIGQIRKKIDAVNKELKPLGQTCQKKEKEYKDA 123

Query: 123 LDAFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 166
           LDAFNEKN+EKVQL+SKLMEMVGESERLR++RLEELSKHVDNTS
Sbjct: 124 LDAFNEKNNEKVQLISKLMEMVGESERLRMKRLEELSKHVDNTS 162

[Close]

BLAST of Cp4.1LG19g03580 vs. ExPASy TrEMBL
Match: A0A6J1IS07 (RAB6-interacting golgin OS=Cucurbita maxima OX=3661 GN=LOC111478791 PE=3 SV=1)

HSP 1 Score: 243 bits (620), Expect = 7.21e-80
Identity = 142/163 (87.12%), Postives = 152/163 (93.25%), Query Frame = 0


Query: 3   QAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRTEVQQKLQAR 62
           Q EQNPQ  QLQ+MLQNSGN SFSSK+DEEMSKSALSAFREKEEEIERMRTE+QQKLQAR
Sbjct: 2   QNEQNPQ--QLQVMLQNSGNLSFSSKEDEEMSKSALSAFREKEEEIERMRTELQQKLQAR 61

Query: 63  LGRVEEENRRLASIREELEAI-ADPMRKEIGQIRKRIDAVNKELKPLGQTCQKREKEYKD 122
           LGRVEEE+RRLASIREELE I  DP RKEIGQIRKRID +NKELKPLGQ CQK+EKEYKD
Sbjct: 62  LGRVEEESRRLASIREELEGIDGDPTRKEIGQIRKRIDTLNKELKPLGQICQKKEKEYKD 121

Query: 123 ALDAFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDN 164
           ALDAFNEKN+EKVQ +SKLMEMVGESER+RL+RLEELSKHVDN
Sbjct: 122 ALDAFNEKNNEKVQCISKLMEMVGESERVRLKRLEELSKHVDN 162

[Close]

BLAST of Cp4.1LG19g03580 vs. ExPASy TrEMBL
Match: A0A6J1EJF7 (RAB6-interacting golgin OS=Cucurbita moschata OX=3662 GN=LOC111433155 PE=3 SV=1)

HSP 1 Score: 241 bits (614), Expect = 5.91e-79
Identity = 141/165 (85.45%), Postives = 152/165 (92.12%), Query Frame = 0


Query: 3   QAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRTEVQQKLQAR 62
           Q EQNPQ  QLQ+MLQNSGN SFSSK+DEEMSKSALSAFREKEEEIERMRTE+QQKLQAR
Sbjct: 2   QNEQNPQ--QLQVMLQNSGNLSFSSKEDEEMSKSALSAFREKEEEIERMRTELQQKLQAR 61

Query: 63  LGRVEEENRRLASIREELEAI-ADPMRKEIGQIRKRIDAVNKELKPLGQTCQKREKEYKD 122
           LGRVEEE+RRLASIREELE I  DP RKEIGQIRKRID +NKELKPLGQ CQK+EKEYKD
Sbjct: 62  LGRVEEESRRLASIREELEGIDGDPTRKEIGQIRKRIDTLNKELKPLGQICQKKEKEYKD 121

Query: 123 ALDAFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 166
           ALDAFNEKN+EKV  +SKLMEMVGESER+RL+RLEELSKHVDN +
Sbjct: 122 ALDAFNEKNNEKVLCISKLMEMVGESERVRLKRLEELSKHVDNNT 164

[Close]

BLAST of Cp4.1LG19g03580 vs. TAIR 10
Match: AT3G09980.1 (Family of unknown function (DUF662) )

HSP 1 Score: 191.4 bits (485), Expect = 5.7e-49
Identity = 103/160 (64.38%), Postives = 137/160 (85.62%), Query Frame = 0


Query: 8   PQHQQLQLMLQNSGNFSFS---SKDDEEMSKSALSAFREKEEEIERMRTEVQQKLQARLG 67
           P     QL  Q SG+ SFS   SK+DEEMS++ALSAFR KEEEIE+ + E+++++QA+LG
Sbjct: 17  PAVHSRQLGAQLSGSMSFSSQMSKEDEEMSRTALSAFRAKEEEIEKKKMEIRERVQAQLG 76

Query: 68  RVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQKREKEYKDALD 127
           RVEEE +RLA IREELE +ADPMRKE+  +RK+ID+VNKELKPLG T QK+E+EYK+AL+
Sbjct: 77  RVEEETKRLALIREELEGLADPMRKEVAMVRKKIDSVNKELKPLGHTVQKKEREYKEALE 136

Query: 128 AFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDN 165
           AFNEKN EKVQL+++LME+VGESE++R+++LEELSK++D+
Sbjct: 137 AFNEKNREKVQLITRLMELVGESEKMRMKKLEELSKNIDS 176

[Close]

BLAST of Cp4.1LG19g03580 vs. TAIR 10
Match: AT2G36410.2 (Family of unknown function (DUF662) )

HSP 1 Score: 187.6 bits (475), Expect = 8.2e-48
Identity = 103/165 (62.42%), Postives = 141/165 (85.45%), Query Frame = 0


Query: 3   QAEQNPQ-HQQLQLMLQNSGNFSFS---SKDDEEMSKSALSAFREKEEEIERMRTEVQQK 62
           Q++  PQ  QQ   M+ ++G+ SFS   S++DEEM++SALSAFR KE+EIE+ R EV+++
Sbjct: 26  QSQPQPQPQQQSNEMVLHTGSLSFSSHMSREDEEMTRSALSAFRAKEDEIEKRRMEVRER 85

Query: 63  LQARLGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQKREKE 122
           +QA+LGRVE+E +RL++IREELE++ADPMRKE+  +RK+ID+VNKELKPLG T QK+E+E
Sbjct: 86  IQAQLGRVEQETKRLSTIREELESMADPMRKEVSVVRKKIDSVNKELKPLGSTVQKKERE 145

Query: 123 YKDALDAFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVD 164
           YK+ALD FNEKN EKVQL++KLME+VGESE+LR+ +LEELSK ++
Sbjct: 146 YKEALDTFNEKNREKVQLITKLMELVGESEKLRMIKLEELSKSIE 190

[Close]

BLAST of Cp4.1LG19g03580 vs. TAIR 10
Match: AT3G52920.2 (Family of unknown function (DUF662) )

HSP 1 Score: 185.3 bits (469), Expect = 4.1e-47
Identity = 102/164 (62.20%), Postives = 133/164 (81.10%), Query Frame = 0


Query: 3   QAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRTEVQQKLQAR 62
           +A   P  Q + L        S  SK+DEEM++SALSAFR KE+EIE+ + EV+++++A+
Sbjct: 6   EATTQPPQQMMSLSFS-----SQMSKEDEEMARSALSAFRAKEDEIEKRKMEVRERVKAQ 65

Query: 63  LGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQKREKEYKDA 122
           LGRVEEE RRLASIREELE +ADPMRKE+  +RK+ID+VNKELKPLG T QK+E+EYK+A
Sbjct: 66  LGRVEEETRRLASIREELETMADPMRKEVNWVRKKIDSVNKELKPLGSTVQKKEREYKEA 125

Query: 123 LDAFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 167
           LD FNEKN EKVQL++KLME+VGESE+LRL++L+ELS+ +D  S
Sbjct: 126 LDTFNEKNREKVQLITKLMELVGESEKLRLKKLDELSRSIDTES 164

[Close]

BLAST of Cp4.1LG19g03580 vs. TAIR 10
Match: AT2G36410.3 (Family of unknown function (DUF662) )

HSP 1 Score: 183.7 bits (465), Expect = 1.2e-46
Identity = 102/165 (61.82%), Postives = 139/165 (84.24%), Query Frame = 0


Query: 3   QAEQNPQ-HQQLQLMLQNSGNFSFS---SKDDEEMSKSALSAFREKEEEIERMRTEVQQK 62
           Q++  PQ  QQ   M+ ++G+ SFS   S++DEEM++SALSAFR KE+EIE+ R EV+++
Sbjct: 26  QSQPQPQPQQQSNEMVLHTGSLSFSSHMSREDEEMTRSALSAFRAKEDEIEKRRMEVRER 85

Query: 63  LQARLGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQKREKE 122
           +QA+LGRVE+E +RL++IREELE++ADPMRKE+  +RK+ID+VNKELKPLG T QK+  E
Sbjct: 86  IQAQLGRVEQETKRLSTIREELESMADPMRKEVSVVRKKIDSVNKELKPLGSTVQKKVME 145

Query: 123 YKDALDAFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVD 164
           YK+ALD FNEKN EKVQL++KLME+VGESE+LR+ +LEELSK ++
Sbjct: 146 YKEALDTFNEKNREKVQLITKLMELVGESEKLRMIKLEELSKSIE 190

[Close]

BLAST of Cp4.1LG19g03580 vs. TAIR 10
Match: AT2G36410.1 (Family of unknown function (DUF662) )

HSP 1 Score: 183.3 bits (464), Expect = 1.5e-46
Identity = 104/168 (61.90%), Postives = 141/168 (83.93%), Query Frame = 0


Query: 3   QAEQNPQ-HQQLQLMLQNSGNFSFS---SKDDEEMSKSALSAFREKEEEIERMRTEVQQK 62
           Q++  PQ  QQ   M+ ++G+ SFS   S++DEEM++SALSAFR KE+EIE+ R EV+++
Sbjct: 26  QSQPQPQPQQQSNEMVLHTGSLSFSSHMSREDEEMTRSALSAFRAKEDEIEKRRMEVRER 85

Query: 63  LQARLGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQKREKE 122
           +QA+LGRVE+E +RL++IREELE++ADPMRKE+  +RK+ID+VNKELKPLG T QK+E+E
Sbjct: 86  IQAQLGRVEQETKRLSTIREELESMADPMRKEVSVVRKKIDSVNKELKPLGSTVQKKERE 145

Query: 123 YKDALDAFNEKNSEKVQLVSKLMEM---VGESERLRLRRLEELSKHVD 164
           YK+ALD FNEKN EKVQL++KLMEM   VGESE+LR+ +LEELSK ++
Sbjct: 146 YKEALDTFNEKNREKVQLITKLMEMEQLVGESEKLRMIKLEELSKSIE 193

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g03580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B1H222	3.2e-04	29.51	RAB6-interacting golgin OS=Rattus norvegicus OX=10116 GN=Gorab PE=2 SV=2	[more]

BLAST of Cp4.1LG19g03580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023517191.1	9.73e-99	100.00	uncharacterized protein KIAA1211-like [Cucurbita pepo subsp. pepo]	[more]
XP_022962812.1	3.96e-98	99.40	uncharacterized protein KIAA1211-like [Cucurbita moschata]	[more]
KAG6595202.1	5.63e-98	99.40	hypothetical protein SDJN03_11755, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022972692.1	1.61e-97	98.80	uncharacterized protein KIAA1211-like [Cucurbita maxima]	[more]
XP_022143816.1	1.16e-80	85.98	uncharacterized protein LOC111013636 [Momordica charantia]	[more]

BLAST of Cp4.1LG19g03580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HDL2	1.92e-98	99.40	RAB6-interacting golgin OS=Cucurbita moschata OX=3662 GN=LOC111463194 PE=3 SV=1	[more]
A0A6J1I5J6	7.81e-98	98.80	RAB6-interacting golgin OS=Cucurbita maxima OX=3661 GN=LOC111471218 PE=3 SV=1	[more]
A0A6J1CRG0	5.60e-81	85.98	RAB6-interacting golgin OS=Momordica charantia OX=3673 GN=LOC111013636 PE=3 SV=1	[more]
A0A6J1IS07	7.21e-80	87.12	RAB6-interacting golgin OS=Cucurbita maxima OX=3661 GN=LOC111478791 PE=3 SV=1	[more]
A0A6J1EJF7	5.91e-79	85.45	RAB6-interacting golgin OS=Cucurbita moschata OX=3662 GN=LOC111433155 PE=3 SV=1	[more]

BLAST of Cp4.1LG19g03580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09980.1	5.7e-49	64.38	Family of unknown function (DUF662)	[more]
AT2G36410.2	8.2e-48	62.42	Family of unknown function (DUF662)	[more]
AT3G52920.2	4.1e-47	62.20	Family of unknown function (DUF662)	[more]
AT2G36410.3	1.2e-46	61.82	Family of unknown function (DUF662)	[more]
AT2G36410.1	1.5e-46	61.90	Family of unknown function (DUF662)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 34..61
None	No IPR available	COILS	Coil	Coil	coord: 63..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR21470:SF10	ANKYRIN REPEAT 30A-LIKE PROTEIN (DUF662)	coord: 1..164
IPR007033	RAB6-interacting golgin	PFAM	PF04949	Transcrip_act	coord: 18..163 e-value: 3.6E-67 score: 225.0
IPR007033	RAB6-interacting golgin	PANTHER	PTHR21470	RAB6-INTERACTING PROTEIN GORAB	coord: 1..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG19g03580.1	Cp4.1LG19g03580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005794	Golgi apparatus