Cp4.1LG19g02920 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG19g02920
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RING-CH-type domain-containing protein
Location	Cp4.1LG19: 2654666 .. 2656429 (+)
RNA-Seq Expression	Cp4.1LG19g02920
Synteny	Cp4.1LG19g02920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCACATGACTCTCTGTATAGTACCTACGCAATTGAATTCATATATTAATGTTTTCCTTTTGATTCCCTTAATAATTTAGTACTCTTTTAGCATCTACAAAATGAATTTTGAGGGGAATTTTTTTGAATAATGGAAAGTTGTTGAGAGAAATGTCAAAAGTGCCCCTGGTTTACATTGATGGGATATTTTCCCCTGGGAGAGAAACAGTCTTTTTGCACAGTAAAAAGTCATTCTTTCTATTCTCATAACATCCGCAGAACAAGGAGAGCAGCCCAGCAAAGCGACAACTCCTAACTCCAAATTCATTTTTATTATTAAACTCTTTTTTTTTTTATTTTTTCCCCTCAGCCAAACACGGTTCATCTCCGACATATATTTGTCCAAATCCGAAACATTGCATTCTAGGATTACGAACCAGCCCTCTTCTCAATCTGATGAATCCAATTCGGAACTCTTTAGTTTCCACTGAACCCATCTTCCTTTATTCTCTTCTGTGGCTAATTTTCATGGCTTTTTGAGTTTCTGATTCAGGGGTTTCTTAAAAATGGCGGCTTTGGAGACAGCCGGAGTTGATTTGGAGGAAGGAGGTCGTGGTGGTCACGGCGGACGGCGGGCGGAGGCGGGTGAAGTGAAGGTGCATTCAGAGAGGGATTGTAGGATTTGCCATTTGGGGTTGGAGAGCAACAGTAGTGAGTGTGGAACTGCAATTGAATTGGGCTGTTCTTGTAAGAATGATTTGGCTGCTGCCCACAAGCATTGTGCTGAAGCTTGGTTCAAAATCAGAGGAAACAAGTGAGTTTTAATTTCAAATCCCTTTTCGATTTCACGATTCTTAAACTGATCTGCTGAGAATTTGAATATATCTAGAATTGTTCTTAGTTGGGATCTTTTTTTAGTGTTTTTGGGAAGCTTGAGAAGGCTATAGAAAGGAAAAAATTAAAACAAAAACAATGCAATCTTAGTCAAAAGGAACGGAGTGGAATAGAATATGGAATTGAGAAACGAAGCATTATAAAAAAGTTATTCAATTTGTCTTCACTTCATTAACTCTCTACCTTATAATATTATTCTCTTACCTTTCATACACATTAGAATCTCTCATTGATTTATTTTTAAAGTGTATGTCTTTAATAAAGAGGAGATTAGATGTCTTGACGGTACATTATTTGTATCGTTCTTAATATATGTATCTTCTTAAGTGGTCCTTTTCTTTCTTTGGTTAGGACGTGTGAGATATGTCATTCTATTGTACAAAATGTAGGAGGAGTACATGAACTCGAACAAATGGAGCAACTCCACGAGTTAAACAATGGGACGCTATCGACAACCACGGTTGCAGCATCGGTGGCTGCTCCCGATGGTGGTCGGAGGTTTTGGCAGGTTCATCGAGTACTGAATTTTCTTCTTGCTTGTATTGTATTTGCTTTTGTCATATCTTGGTTGTTCCATTTCAATATGCGGTCATAAAACGGTTGTGTACAGAGGACGGAGGTGAAGTATGTAAAAAGAAAAACGGAGCAACTCGACCTAAATAACGGTTTCTTGCTCTACCAACTGAGCGATACCGGTCATTTCATTTCCTACCCATTATCCTTATTTATTTTCATAGCAAACCGGTGAGACGAAGATTTTGAGTCCTCTACTCTACCAACTGAGCGATACTAGTCATTTCCTATACATCATCCTTATTGTCAATAGCAGATTTGACTACGAAATATTTACTCATGGGTGGGGCAAGTTCGCTCATTAAAAAAAATGATTTT

mRNA sequence

CCCACATGACTCTCTGTATAGTACCTACGCAATTGAATTCATATATTAATGTTTTCCTTTTGATTCCCTTAATAATTTAGTACTCTTTTAGCATCTACAAAATGAATTTTGAGGGGAATTTTTTTGAATAATGGAAAGTTGTTGAGAGAAATGTCAAAAGTGCCCCTGGTTTACATTGATGGGATATTTTCCCCTGGGAGAGAAACAGTCTTTTTGCACAGTAAAAAGTCATTCTTTCTATTCTCATAACATCCGCAGAACAAGGAGAGCAGCCCAGCAAAGCGACAACTCCTAACTCCAAATTCATTTTTATTATTAAACTCTTTTTTTTTTTATTTTTTCCCCTCAGCCAAACACGGTTCATCTCCGACATATATTTGTCCAAATCCGAAACATTGCATTCTAGGATTACGAACCAGCCCTCTTCTCAATCTGATGAATCCAATTCGGAACTCTTTAGTTTCCACTGAACCCATCTTCCTTTATTCTCTTCTGTGGCTAATTTTCATGGCTTTTTGAGTTTCTGATTCAGGGGTTTCTTAAAAATGGCGGCTTTGGAGACAGCCGGAGTTGATTTGGAGGAAGGAGGTCGTGGTGGTCACGGCGGACGGCGGGCGGAGGCGGGTGAAGTGAAGGTGCATTCAGAGAGGGATTGTAGGATTTGCCATTTGGGGTTGGAGAGCAACAGTAGTGAGTGTGGAACTGCAATTGAATTGGGCTGTTCTTGTAAGAATGATTTGGCTGCTGCCCACAAGCATTGTGCTGAAGCTTGGTTCAAAATCAGAGGAAACAAGACGTGTGAGATATGTCATTCTATTGTACAAAATGTAGGAGGAGTACATGAACTCGAACAAATGGAGCAACTCCACGAGTTAAACAATGGGACGCTATCGACAACCACGGTTGCAGCATCGGTGGCTGCTCCCGATGGTGGTCGGAGGTTTTGGCAGGTTCATCGAGTACTGAATTTTCTTCTTGCTTGTATTGTATTTGCTTTTGTCATATCTTGGTTGTTCCATTTCAATATGCGGTCATAAAACGGTTGTGTACAGAGGACGGAGGTGAAGTATGTAAAAAGAAAAACGGAGCAACTCGACCTAAATAACGGTTTCTTGCTCTACCAACTGAGCGATACCGGTCATTTCATTTCCTACCCATTATCCTTATTTATTTTCATAGCAAACCGGTGAGACGAAGATTTTGAGTCCTCTACTCTACCAACTGAGCGATACTAGTCATTTCCTATACATCATCCTTATTGTCAATAGCAGATTTGACTACGAAATATTTACTCATGGGTGGGGCAAGTTCGCTCATTAAAAAAAATGATTTT

Coding sequence (CDS)

ATGGCGGCTTTGGAGACAGCCGGAGTTGATTTGGAGGAAGGAGGTCGTGGTGGTCACGGCGGACGGCGGGCGGAGGCGGGTGAAGTGAAGGTGCATTCAGAGAGGGATTGTAGGATTTGCCATTTGGGGTTGGAGAGCAACAGTAGTGAGTGTGGAACTGCAATTGAATTGGGCTGTTCTTGTAAGAATGATTTGGCTGCTGCCCACAAGCATTGTGCTGAAGCTTGGTTCAAAATCAGAGGAAACAAGACGTGTGAGATATGTCATTCTATTGTACAAAATGTAGGAGGAGTACATGAACTCGAACAAATGGAGCAACTCCACGAGTTAAACAATGGGACGCTATCGACAACCACGGTTGCAGCATCGGTGGCTGCTCCCGATGGTGGTCGGAGGTTTTGGCAGGTTCATCGAGTACTGAATTTTCTTCTTGCTTGTATTGTATTTGCTTTTGTCATATCTTGGTTGTTCCATTTCAATATGCGGTCATAA

Protein sequence

MAALETAGVDLEEGGRGGHGGRRAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCSCKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVGGVHELEQMEQLHELNNGTLSTTTVAASVAAPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS

Homology

[Close]

BLAST of Cp4.1LG19g02920 vs. NCBI nr
Match: XP_023517920.1 (uncharacterized protein LOC111781512 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 341 bits (875), Expect = 1.65e-118
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MAALETAGVDLEEGGRGGHGGRRAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCS 60
           MAALETAGVDLEEGGRGGHGGRRAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCS
Sbjct: 1   MAALETAGVDLEEGGRGGHGGRRAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCS 60

Query: 61  CKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVGGVHELEQMEQLHELNNGTLSTTTV 120
           CKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVGGVHELEQMEQLHELNNGTLSTTTV
Sbjct: 61  CKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVGGVHELEQMEQLHELNNGTLSTTTV 120

Query: 121 AASVAAPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS 163
           AASVAAPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS
Sbjct: 121 AASVAAPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS 163

[Close]

BLAST of Cp4.1LG19g02920 vs. NCBI nr
Match: KAG6595366.1 (hypothetical protein SDJN03_11919, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 325 bits (832), Expect = 5.98e-112
Identity = 160/164 (97.56%), Postives = 160/164 (97.56%), Query Frame = 0


Query: 1   MAALETAGVDLEEGGRGGHGGRRAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCS 60
           MAALETAGVDLEEGGRGG GGRRAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCS
Sbjct: 1   MAALETAGVDLEEGGRGGDGGRRAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCS 60

Query: 61  CKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVGGVHELEQMEQLHELNNGTLSTTTV 120
           CKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVG VHELEQMEQLHE NNGTLSTTTV
Sbjct: 61  CKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVG-VHELEQMEQLHEFNNGTLSTTTV 120

Query: 121 AASVAA-PDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS 163
           AASVAA PDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS
Sbjct: 121 AASVAASPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS 163

[Close]

BLAST of Cp4.1LG19g02920 vs. NCBI nr
Match: KAG7027374.1 (hypothetical protein SDJN02_11386 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 322 bits (825), Expect = 6.99e-111
Identity = 159/164 (96.95%), Postives = 159/164 (96.95%), Query Frame = 0


Query: 1   MAALETAGVDLEEGGRGGHGGRRAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCS 60
           MAALETAGVDLEEGGRGG GGR AEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCS
Sbjct: 1   MAALETAGVDLEEGGRGGDGGRGAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCS 60

Query: 61  CKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVGGVHELEQMEQLHELNNGTLSTTTV 120
           CKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVG VHELEQMEQLHE NNGTLSTTTV
Sbjct: 61  CKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVG-VHELEQMEQLHEFNNGTLSTTTV 120

Query: 121 AASVAA-PDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS 163
           AASVAA PDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS
Sbjct: 121 AASVAASPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS 163

[Close]

BLAST of Cp4.1LG19g02920 vs. NCBI nr
Match: XP_038883458.1 (uncharacterized protein LOC120074413 [Benincasa hispida])

HSP 1 Score: 244 bits (622), Expect = 6.78e-80
Identity = 126/166 (75.90%), Postives = 136/166 (81.93%), Query Frame = 0


Query: 1   MAALETAGVDLEEGGRGGHGGRRAEAGE-VKVHS-ERDCRICHLGLESNSSECGTAIELG 60
           MAALETAG DLE+G R     R +  GE VKV++ ERDCRICHLGL SNS+E G  IELG
Sbjct: 1   MAALETAGADLEKGWRQTAAERGSGVGEEVKVNNLERDCRICHLGLVSNSNEFGVGIELG 60

Query: 61  CSCKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVGGVHELEQMEQLHELNNGTLSTT 120
           C CKNDL+ AHKHCAEAWFKIRGNKTCEICHSIV+NV  V E EQ EQLHE NNGT+ST 
Sbjct: 61  CCCKNDLSTAHKHCAEAWFKIRGNKTCEICHSIVRNVMVVREPEQTEQLHESNNGTVSTA 120

Query: 121 TVAASVAA-PDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS 163
           TVAASVAA P GGR FW VHRVLNFLLAC+VFAFVISWLFHFN+ S
Sbjct: 121 TVAASVAATPSGGRSFWHVHRVLNFLLACMVFAFVISWLFHFNVPS 166

[Close]

BLAST of Cp4.1LG19g02920 vs. NCBI nr
Match: XP_022151515.1 (uncharacterized protein LOC111019441, partial [Momordica charantia])

HSP 1 Score: 238 bits (608), Expect = 1.28e-77
Identity = 119/165 (72.12%), Postives = 132/165 (80.00%), Query Frame = 0


Query: 1   MAALETAG-VDLEEGGRGGHGGRRAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGC 60
           +AA++T G  DLE+G     G RR EA      +ERDCRICHLGLES+S ECG  IELGC
Sbjct: 18  IAAVDTPGSADLEQGRCSSGGERRREA------AERDCRICHLGLESSSDECGIGIELGC 77

Query: 61  SCKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVGGVHELEQMEQLHELNNGTLSTTT 120
           SCKNDL AAHKHCAEAWFKIRGNKTCEICHS+V NV G HE+E +EQL E NN T+STTT
Sbjct: 78  SCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVEQLSESNNATVSTTT 137

Query: 121 VAASVAA-PDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS 163
           VA SV   P+GGR FWQVHRVLNFLLAC+VFAFVISWLFHFN+ S
Sbjct: 138 VATSVTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS 176

[Close]

BLAST of Cp4.1LG19g02920 vs. ExPASy TrEMBL
Match: A0A6J1DBE4 (uncharacterized protein LOC111019441 OS=Momordica charantia OX=3673 GN=LOC111019441 PE=4 SV=1)

HSP 1 Score: 238 bits (608), Expect = 6.22e-78
Identity = 119/165 (72.12%), Postives = 132/165 (80.00%), Query Frame = 0


Query: 1   MAALETAG-VDLEEGGRGGHGGRRAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGC 60
           +AA++T G  DLE+G     G RR EA      +ERDCRICHLGLES+S ECG  IELGC
Sbjct: 18  IAAVDTPGSADLEQGRCSSGGERRREA------AERDCRICHLGLESSSDECGIGIELGC 77

Query: 61  SCKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVGGVHELEQMEQLHELNNGTLSTTT 120
           SCKNDL AAHKHCAEAWFKIRGNKTCEICHS+V NV G HE+E +EQL E NN T+STTT
Sbjct: 78  SCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVEQLSESNNATVSTTT 137

Query: 121 VAASVAA-PDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS 163
           VA SV   P+GGR FWQVHRVLNFLLAC+VFAFVISWLFHFN+ S
Sbjct: 138 VATSVTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS 176

[Close]

BLAST of Cp4.1LG19g02920 vs. ExPASy TrEMBL
Match: A0A1S3B5A7 (uncharacterized protein LOC103486339 OS=Cucumis melo OX=3656 GN=LOC103486339 PE=4 SV=1)

HSP 1 Score: 202 bits (514), Expect = 7.22e-63
Identity = 99/139 (71.22%), Postives = 113/139 (81.29%), Query Frame = 0


Query: 28  EVKVHS---ERDCRICHLGLESNSSECGTAIELGCSCKNDLAAAHKHCAEAWFKIRGNKT 87
           E+KVHS   ERDCRICHLGLESNS E G  IELGCSCK+DLAAAHKHCAE WFKI+GNKT
Sbjct: 95  EIKVHSAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKT 154

Query: 88  CEICHSIVQNVGGVHELEQMEQLHELNNGTLSTTTVAASVAAPDGGRRFWQVHRVLNFLL 147
           CEICHSI +N+ G +E+E  EQ +E NN + STTTVAAS+ + D    FW+ HR LNFLL
Sbjct: 155 CEICHSIARNILGPNEVELTEQSNESNNAS-STTTVAASIPSSDS-HSFWRGHRFLNFLL 214

Query: 148 ACIVFAFVISWLFHFNMRS 163
           AC+VFAFVISWLFHFN+ S
Sbjct: 215 ACMVFAFVISWLFHFNVPS 231

[Close]

BLAST of Cp4.1LG19g02920 vs. ExPASy TrEMBL
Match: A0A251UD00 (Putative RING/FYVE/PHD zinc finger superfamily protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr07g0201871 PE=4 SV=1)

HSP 1 Score: 201 bits (512), Expect = 1.20e-62
Identity = 104/162 (64.20%), Postives = 114/162 (70.37%), Query Frame = 0


Query: 9   VDLEEGGRGG--HGGRRAEAGEVKVHS---ERDCRICHLGLESNSSEC--GTAIELGCSC 68
           VDLE GG GG  HGG       VKVH    ERDCRICH+ L+ +S EC  G  IELGCSC
Sbjct: 69  VDLESGGGGGGVHGGEC-----VKVHLSSVERDCRICHMSLDISSQECENGVPIELGCSC 128

Query: 69  KNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVGGVHELEQMEQLHELNNGTLSTTTVA 128
           K+DLAAAHKHCAEAWFKI+GNKTCEIC SI  NV GVHE E MEQ +E N+   S T   
Sbjct: 129 KDDLAAAHKHCAEAWFKIKGNKTCEICGSIAHNVAGVHEAELMEQWNEANDAMSSATAPG 188

Query: 129 ASVAAPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS 163
            +  A    R FWQ HR LNFLLAC+VFAFVISWLFHFN+ S
Sbjct: 189 GTTTAASDNRSFWQGHRFLNFLLACMVFAFVISWLFHFNVPS 225

[Close]

BLAST of Cp4.1LG19g02920 vs. ExPASy TrEMBL
Match: A0A0A0LAC9 (RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G733180 PE=4 SV=1)

HSP 1 Score: 201 bits (511), Expect = 2.06e-62
Identity = 99/139 (71.22%), Postives = 113/139 (81.29%), Query Frame = 0


Query: 28  EVKVHS---ERDCRICHLGLESNSSECGTAIELGCSCKNDLAAAHKHCAEAWFKIRGNKT 87
           E+KVHS   ERDCRICHLGLESNS E G  IELGCSCK+DLAAAHKHCAE WFKI+GNKT
Sbjct: 95  EIKVHSAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKT 154

Query: 88  CEICHSIVQNVGGVHELEQMEQLHELNNGTLSTTTVAASVAAPDGGRRFWQVHRVLNFLL 147
           CEICHSI +N+ G +E+E  EQ +E NN + STTTVAAS+ + D  + FW  HR LNFLL
Sbjct: 155 CEICHSIARNILGPNEVELTEQSNESNNAS-STTTVAASIPSSDS-QSFWCGHRFLNFLL 214

Query: 148 ACIVFAFVISWLFHFNMRS 163
           AC+VFAFVISWLFHFN+ S
Sbjct: 215 ACMVFAFVISWLFHFNVPS 231

[Close]

BLAST of Cp4.1LG19g02920 vs. ExPASy TrEMBL
Match: A0A6J1CWG7 (uncharacterized protein LOC111015024 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111015024 PE=4 SV=1)

HSP 1 Score: 199 bits (506), Expect = 1.18e-61
Identity = 98/139 (70.50%), Postives = 110/139 (79.14%), Query Frame = 0


Query: 28  EVKVHS---ERDCRICHLGLESNSSECGTAIELGCSCKNDLAAAHKHCAEAWFKIRGNKT 87
           E+KVH    ERDCRICHLGLESNS E G  IELGCSCK+DLAAAHKHCAE WFKIRGNKT
Sbjct: 95  EIKVHLAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIRGNKT 154

Query: 88  CEICHSIVQNVGGVHELEQMEQLHELNNGTLSTTTVAASVAAPDGGRRFWQVHRVLNFLL 147
           CEICHSI +N+ G HE+E  EQ  E NN + ST  VAAS+ + D  + FW+ HR LNFLL
Sbjct: 155 CEICHSIARNILGPHEVELTEQSTESNNAS-STAAVAASIPSSDS-QSFWRGHRFLNFLL 214

Query: 148 ACIVFAFVISWLFHFNMRS 163
           AC+VFAFVISWLFHFN+ S
Sbjct: 215 ACMVFAFVISWLFHFNVPS 231

[Close]

BLAST of Cp4.1LG19g02920 vs. TAIR 10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 164.5 bits (415), Expect = 7.3e-41
Identity = 81/131 (61.83%), Postives = 93/131 (70.99%), Query Frame = 0


Query: 33  SERDCRICHLGLESNSSECGTAIELGCSCKNDLAAAHKHCAEAWFKIRGNKTCEICHSIV 92
           SERDCRICH+ L++ + E G  IELGCSCK DLAAAHKHCAE WFKI+GNK CE+C SI 
Sbjct: 75  SERDCRICHMSLDAANLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNKICEVCGSIA 134

Query: 93  QNVGGVHELEQMEQLHELNNGTLSTTTVAASVAAPDGGRRFWQVHRVLNFLLACIVFAFV 152
            NV G  E+E  E  +E N   +   T+  S      GR FWQ HR LNFLLAC+VFAFV
Sbjct: 135 GNVVGSVEVESEESRNEANG--VENLTLRTSGPRLVEGRSFWQGHRFLNFLLACMVFAFV 194

Query: 153 ISWLFHFNMRS 164
           ISWLFHFN+ S
Sbjct: 195 ISWLFHFNVPS 203

[Close]

BLAST of Cp4.1LG19g02920 vs. TAIR 10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 142.9 bits (359), Expect = 2.3e-34
Identity = 73/137 (53.28%), Postives = 93/137 (67.88%), Query Frame = 0


Query: 34  ERDCRICHLGLESNSSECGTAIELGCSCKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQ 93
           E+DCRICHLG+E++    G AIELGCSCK+DLA AH+ CAE WFKI+G+KTCEIC S+ +
Sbjct: 81  EKDCRICHLGVETSG---GGAIELGCSCKDDLAVAHRQCAETWFKIKGDKTCEICQSVAR 140

Query: 94  NVGGVHEL--EQMEQLHELNNGTLSTTTVAASVAAPDGG-----RRFWQVHRVLNFLLAC 153
           NVGG +E+    ME+  EL NG           AA +GG        WQ  RV+N +LAC
Sbjct: 141 NVGGANEMVGSTMEE-RELRNG--------EETAAGEGGGATVVENRWQPQRVVNLVLAC 200

Query: 154 IVFAFVISWLFHFNMRS 164
           +VF F ISW+FHF++ S
Sbjct: 201 MVFGFFISWIFHFHVSS 205

[Close]

BLAST of Cp4.1LG19g02920 vs. TAIR 10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 141.0 bits (354), Expect = 8.7e-34
Identity = 72/139 (51.80%), Postives = 88/139 (63.31%), Query Frame = 0


Query: 26  AGEVKVHSERDCRICHLGLESNSSECGTAIELGCSCKNDLAAAHKHCAEAWFKIRGNKTC 85
           +G ++   E+DCRICHLGLES+  ECG  + LGCSCK+DL   HK CA+ WFKI+GNKTC
Sbjct: 67  SGSIRGSPEKDCRICHLGLESSRHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGNKTC 126

Query: 86  EICHSIVQNVGGVHELEQMEQLHELNNGTLSTTTVAASVAAPDG-GRRFWQVHRVLNFLL 145
           EIC SI QN   V + E  +   E N   +        VA  D   RR  + +R LNFLL
Sbjct: 127 EICRSIAQNFFKV-DNEIGQTTVETNVDDVEAGNTPTMVATSDSDDRRLCRGNRFLNFLL 186

Query: 146 ACIVFAFVISWLFHFNMRS 164
            C+V AFVISW FHFN+ S
Sbjct: 187 TCMVCAFVISWFFHFNLPS 204

[Close]

BLAST of Cp4.1LG19g02920 vs. TAIR 10
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 109.8 bits (273), Expect = 2.1e-24
Identity = 71/197 (36.04%), Postives = 88/197 (44.67%), Query Frame = 0


Query: 9   VDLEEGG-----RGGHGG--------RRAEAGEVKVHSERDCRICHLGLESNSSE----- 68
           VDLE GG     +  H G        R+    + K    RDCRICHL LE+N        
Sbjct: 40  VDLESGGVPAPEKQLHSGGKKRRTRRRKRRKKKKKKKGGRDCRICHLPLETNKEAEDEDE 99

Query: 69  --------------------------CGTAIELGCSCKNDLAAAHKHCAEAWFKIRGNKT 128
                                      G  ++LGCSCK DL  AH  CAE WFKI+GN T
Sbjct: 100 EEEDDSDDDEDEEDEEEEEEEEEEEYYGLPLQLGCSCKGDLGVAHSKCAETWFKIKGNMT 159

Query: 129 CEICHSIVQNVGGVHELEQMEQLHELNNGTLSTTTVAASVAAPDGGRRFWQVHRVLNFLL 162
           CEIC ++  NV G       EQ +  +  +  +   A         R  W    V+NFLL
Sbjct: 160 CEICGAMALNVAG-------EQSNPESTASTHSQAAAGQSLTQTEPRGIWHGRPVMNFLL 219

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BLAST of Cp4.1LG19g02920 vs. TAIR 10
Match: AT5G01070.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 86.3 bits (212), Expect = 2.5e-17
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 26  AGEVKVHSERDCRICHLGLESNSSECGTAIELGCSCKNDLAAAHKHCAEAWFKIRGNK 84
           +G ++   E+DCRICHLGLES+  ECG  + LGCSCK+DL   HK CA+ WFKI+GNK
Sbjct: 67  SGSIRGSPEKDCRICHLGLESSRHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGNK 124

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g02920 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG19g02920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023517920.1	1.65e-118	100.00	uncharacterized protein LOC111781512 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG6595366.1	5.98e-112	97.56	hypothetical protein SDJN03_11919, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7027374.1	6.99e-111	96.95	hypothetical protein SDJN02_11386 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038883458.1	6.78e-80	75.90	uncharacterized protein LOC120074413 [Benincasa hispida]	[more]
XP_022151515.1	1.28e-77	72.12	uncharacterized protein LOC111019441, partial [Momordica charantia]	[more]

BLAST of Cp4.1LG19g02920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DBE4	6.22e-78	72.12	uncharacterized protein LOC111019441 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A1S3B5A7	7.22e-63	71.22	uncharacterized protein LOC103486339 OS=Cucumis melo OX=3656 GN=LOC103486339 PE=...	[more]
A0A251UD00	1.20e-62	64.20	Putative RING/FYVE/PHD zinc finger superfamily protein OS=Helianthus annuus OX=4...	[more]
A0A0A0LAC9	2.06e-62	71.22	RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G73318...	[more]
A0A6J1CWG7	1.18e-61	70.50	uncharacterized protein LOC111015024 isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Cp4.1LG19g02920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05830.1	7.3e-41	61.83	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G37950.1	2.3e-34	53.28	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.2	8.7e-34	51.80	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G59000.1	2.1e-24	36.04	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.1	2.5e-17	60.34	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 36..89 e-value: 1.3E-14 score: 64.5
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 37..88 e-value: 2.5E-8 score: 33.9
IPR011016	Zinc finger, RING-CH-type	PROSITE	PS51292	ZF_RING_CH	coord: 29..95 score: 17.439644
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 22..96 e-value: 6.7E-14 score: 53.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR46214	ZINC FINGER, RING-CH-TYPE	coord: 28..162
None	No IPR available	PANTHER	PTHR46214:SF5	OS01G0850200 PROTEIN	coord: 28..162
None	No IPR available	CDD	cd16495	RING_CH-C4HC3_MARCH	coord: 37..89 e-value: 1.25169E-11 score: 54.6408
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 33..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG19g02920.1	Cp4.1LG19g02920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding