Cp4.1LG19g01080 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCTCCCACGTGTGGCCCCCAATTCACCCTATGGATAAGCCAAGCCCTTCCCTAAACGCTCCCATTTCAATCCCAAACCCCAAAAAACCTCAAAAAAGTAAAAGAAAAAACCCCTCTTCACAGATCGAAGCCATGACCTCCTAGGGAACAAGAAGAGAGGATCTACAGATATGTCTGTGTTGGCTGCGACCACTGCTCAGATTCTGTACAGCGAAGTTCATCACAATCAACACCAAATTCCGAGCAATGGGGGGAGGCGGTGTTTTGTGAACAGAGATTTTGGGTCTGTTTTATTTGGCCGGAGAAATGGGGAGCGGCGGAGGCTGCGGCGGAGGGAGTTCAGGATGGGGACGGAAGCTGGGTTTTGGCCGGATCTGTCCCGGCCGGCGATGGTGGAGATGGAGTCCATTGAGGATTCCGAGCAGCTTGATCGGATTTTGGCTCACGCCCAGGAACTGTCTCAGCCGGTTCTTATCGACTGGTTCGTATCTCTTCCTTCTTTTATCTCGAAAGGACTTAATCGTCATTTCACCCCCATTAGCTTAATTAGATTATTATTATTATTATTATTATTATTTTTAATAATAATAACTAAATTAATAAAAACATCTTTAAATATATTGTCTACAAAATATCAACATTAAAAAAATAAAATAAATAAAATAAAAAATATTAACATGAGTTTTAGATGAAAACAAATATTTATTAATACTCTTCGATTTTTTTAATTTTAAAACATACTATAAACGTCAGTAATATATTTTGAAATTTCATGAGTATTTTTTAAATATAGTATTAACGGTAAGAGTATTTTTAAACTTTTTTAAAAAAATTACGAATATTAATGAAACTTTTTAAAAAATTAATGATATTCTCGATAAACATTTTTGAAAGTTAGATGATATTTTTGAATTCATTTTAAAAGTTTAAGAGTATTTTTGAAACAAAATATTAACGGTAAGAGTATTTTTGAACTTTTTTTTGTTAAGCTTAGTCTTATTGAAACTTTTAAAAGTTCAGAATTGATTTTTTTAAAAACGGAAAATTTGATTTAGTTTCGTTGGTGGGTTGATATGTTTTTGGTCGGGTTTTGACCAACTCGAGAATAGGGCTACAACCCTACTCATTCTCTATACTGAGCTAAGTTGTGTCAGCATACCCTCGTTTAATTTGTTTTTTTTCGTGTTGGTTGTGAGTATCCTTATAATGAAGGAGACTATGTGTACGAGTAGGTGTTCGTGTATTAGATGTCGATAAATAAAATTAACATAAAATTATACTTAATTAAGGGTAATTAATCCAAATTGGAATGAATGGGGAATAGGATGGCAACGTGGTGTAGGAAATGCATCTACTTGAAGCCTAAATTGGAGAAACTTGCTGCTGATTATCTTACCAAGTAACATTTATTTTATTAACCTTTCATTTACGTGACAACAGCCGATATTGTCTTCTTTGGACTTCCCCTCAATGCTTTAAAATGCGTCTGCGAGGGAAAGGTTTTTCATACCTTTATAAATGGTGGTTTGTTCTCCTCCCCAACCAATGTAGGACATCATAATAATAGTATCAGAGCTAGACACTGGACGATGTGCCAGCCTTCTCGTTGTTCCCCGAAAGGGGTAGACATAAGGCGGTGTGCCAGTAAGGACGCTGGGCCTCAAAGGGGGGCGGTCCCACATTGATTGGAGGAAGGAAAGAGTGCCAGCGAGGACACTGGGTCCCGAAGGAGGTGGATTGTGATGTCCCACATTGGTTGGGGAGAACAAACCACTATTTATAAAGGTGTGGAAACTTTCCCCTGACAGTTTTAAAGTCTTGAGGGAAGCTCGAAAGGGAAAGCCCAAAGAGAACAATATCTGCTAGTGGTGGATCTGGGTCGTTACTATTTATTTATTTTAATTATTTACTAACTTTTCTCAAAAAAAAAAAAAAAAAAAAAAATTTTGCAGAGCAAAATTTTACTATGTGGATGTGAATAAGGTCCCTCAATCTCTAGTTAAACGTGGAAACATCTCTGTAAGTATACATATACATATATATATATGCATATACATATATATATATATATGCATATACATATATATATGTATATATATATATATATATATATATATATTTGAGTTCTTCAAATCCTTTAAGTTATTAATTTATATATGTTCTCATTATGCAGAAAATGCCAACAATTCAGGTGATCAATTTTATTTATTATTATTTTTTAAATTTTAGATTATAAATTGTTAAATATCTTGTATTTCTTTTGAAAAATCAGTTTCGGGTGTTGATTTTACGTTCTTAAAATCGTTTGGAAGTGCTTTTCGATCAAACTCTCGGGTCAAAAGCTTTGAAGAAGTGCTTTCTCTAAATATTTGACTCTCGTATTATTTTTTAGTTTTGTTGAGTACCCGAAACGTCTTTTTGGGTCGAGAGAGGGACAAATAAGGTAGTTAAAAATTTTGCAAAATTATTGTTTTAGCTTTGGAAGGATGGAGAAATGAAAGCAGAAGTGATTGGAGGGCACAAAGCTTGGCTTGTGATCGAAGAAGTTAAAGAAATGATTCAAAAGTTTGTTTAGATCACGAGAAACACGTTCCTCGTTCTGTTTGATTGTTTAGTCTCTGGGCGGCTCTCGTCTTCAACCTTTCATAGGCCAAATGGTTCTCAAGACTTCATTTTTTTCGTTTATAAGTTGTTATCTTCTGAAAATTTAATGTACATGTATTATAAAAAAGAAAATATCAATGTCAATGAAAATATTAACGAACTTGATAACTATTTATCTAGCTAAGATGGATGCTTCAATGCCCTACCACGCCAGGGTTGAAAACAAGCAACCAACTAGTATTCAATTTGAGTAGTTTAATCACACACTTACGAGAGGTCATTCAGGACATGTATCTTCTGAATTTGGACCGCTATAGATCAACTAAAAAAGAAAAAAAAACTTAAACCCAATTAGTTTTGAATGTATCCAGTCAAATTGGCTAGCAAATAAATCAACCTGACACGAGTTGAGTGTATTTGAACAAGACGAAATAATCCACACTCACTTACCCATTGTCATGTACGACATTGCATAGTGCATCAACCACAATCGTAGTCATAATCATCACACCTTCCAATAACTACAAAGTAGACTCATTTTGAGGTAGATGTCATTGAAAGTTCAACGACACGTGGGGTGAAGACATTCAAACCTCTAATCTTTTAAGTCGATAGCCTATGTCTTGAACAATTAAACTATGCTCAAATTGAGTACGTAGACTCATAATTACATCTGGTTCAATACTAATTCAATGATTCATATAGTGTATCAAAAGATGTTTGCACGTAGCACAATAGTATCCAGCATTTCCTCTCCTCTGTGGCATATCCTCTAACCATGTTGACTCACTTCAATCCTTCCGAATATTATTGTCTCAAACATGCACTAAACATTCAAGTTAACTCGGCCTAAAAATCTACCAAAGAGGATGTTTACCAACACGGACCACCTCCATTGTGAATGTAACAGTCCAGCCTACCGCTAACAGATATTGTCTTTTTTGAGCTTTCATTTTTGGACTTCCCCTCAAGGTTTTAAAATGTGTCCACCTGGGAAAGGCATCCACACTTTTATAAGGAATGCTTTGTTCCCCTCTCCAACCGACGTGGAGTCCCACAATCCACTCCACTTGAGGGCCAATGTCCTCACAGGCACGCCATTACACCACATCTTCATTCATTTTTTTTTTCTCATTCAATTTAGGGAAGAGCAAAAAAAAATTCATACCAACTTCAGCTACTTTATATCAGTACAGTTGCCAAGTACTACACACTTAAAGAGCAAAGTCGAAATAAAAGCAGATAATCACGCTACTAGCAACCAAAAATTAATTAATAGCCTTGAAGTAATTTCATTCGCATGTCTTTAGAATACTGTTATGTTTTAGTTTTTCTAAAGTATTTAATTTAAGACAGAAAGAGTGAGAGAAATTTCGTCCCAAATTTAGAAAGAAATGATGTATAGCAGATCTTCTAATTAAATCATCATTCATGAACCATTTTAAGCCAAGGCAGCTAGTATCTGTTCTATTTACTTATTTTTGCATATACATACCAGAATTTCTTCTGAACACTTCAGAAATGAGAAAAATTTACCAATTTTTTTAAAAAGAATTGAAAATCCTTTTAACAAATAAAAAATGAGCTCTGATGCAAGGAAACAGAGGTAAAGGGTATTTTGTATCCTGTCGAATACTTAACTACCTTTCCCAATGTCAACTTCATACTCAGACAACCTAAAACATAACATAAAATCAAAACCCTATAGGATATATTTCATGATATTGGTACCTTAACTAAGTACTAAACAATTCTATATTTGTGAGATCGCCTTAATAAAGTGGAGAATGGAAAAAAAGATCAAATAGAATGTACATAATGTACCGAATTACGTCGTACGAGCACCATGTGTCCTCGATGCCCAAATGCCGAACAACACCAGGAACAAAAAGATGAACAAAATAGCCCAATATCGTGCAAGACTGTATTTTATCCTGGTAAGCACAAACTAGATAAATGGAAGGAATAGAAGTCAGAAGGCTGAGCATTGAAGTTTATATTTCCAGAAGTAAACAAAAAATAAGAAATTAGATTTGATGTTTCCAAAATTTATATATAAATCAGAAACGTTCAAAATTAAAAAAAGGACTCGAAGAGTTTTAAAAAAAAGACTAAACGTGTTTATA CCTCCCACGTGTGGCCCCCAATTCACCCTATGGATAAGCCAAGCCCTTCCCTAAACGCTCCCATTTCAATCCCAAACCCCAAAAAACCTCAAAAAAGTAAAAGAAAAAACCCCTCTTCACAGATCGAAGCCATGACCTCCTAGGGAACAAGAAGAGAGGATCTACAGATATGTCTGTGTTGGCTGCGACCACTGCTCAGATTCTGTACAGCGAAGTTCATCACAATCAACACCAAATTCCGAGCAATGGGGGGAGGCGGTGTTTTGTGAACAGAGATTTTGGGTCTGTTTTATTTGGCCGGAGAAATGGGGAGCGGCGGAGGCTGCGGCGGAGGGAGTTCAGGATGGGGACGGAAGCTGGGTTTTGGCCGGATCTGTCCCGGCCGGCGATGGTGGAGATGGAGTCCATTGAGGATTCCGAGCAGCTTGATCGGATTTTGGCTCACGCCCAGGAACTGTCTCAGCCGGTTCTTATCGACTGAGCAAAATTTTACTATGTGGATGTGAATAAGGTCCCTCAATCTCTAGTTAAACGTGGAAACATCTCTAAAATGCCAACAATTCAGCTTTGGAAGGATGGAGAAATGAAAGCAGAAGTGATTGGAGGGCACAAAGCTTGGCTTGTGATCGAAGAAGTTAAAGAAATGATTCAAAAGTTTGTTTAGATCACGAGAAACACGTTCCTCGTTCTGTTTGATTGTTTAGTCTCTGGGCGGCTCTCGTCTTCAACCTTTCATAGGCCAAATGGTTCTCAAGACTTCATTTTTTTCGTTTATAAGTTGTTATCTTCTGAAAATTTAATGTACATGTATTATAAAAAAGAAAATATCAATGTCAATGAAAATATTAACGAACTTGATAACTATTTATCTAGCTAAGATGGATGCTTCAATGCCCTACCACGCCAGGGTTGAAAACAAGCAACCAACTAGTATTCAATTTGAGTAGTTTAATCACACACTTACGAGAGGTCATTCAGGACATGTATCTTCTGAATTTGGACCGCTATAGATCAACTAAAAAAGAAAAAAAAACTTAAACCCAATTAGTTTTGAATGTATCCAGTCAAATTGGCTAGCAAATAAATCAACCTGACACGAGTTGAGTGTATTTGAACAAGACGAAATAATCCACACTCACTTACCCATTGTCATGTACGACATTGCATAGTGCATCAACCACAATCGTAGTCATAATCATCACACCTTCCAATAACTACAAAGTAGACTCATTTTGAGGTAGATGTCATTGAAAGTTCAACGACACGTGGGGTGAAGACATTCAAACCTCTAATCTTTTAAGTCGATAGCCTATGTCTTGAACAATTAAACTATGCTCAAATTGAGTACGTAGACTCATAATTACATCTGGTTCAATACTAATTCAATGATTCATATAGTGTATCAAAAGATGTTTGCACGTAGCACAATAGTATCCAGCATTTCCTCTCCTCTGTGGCATATCCTCTAACCATGTTGACTCACTTCAATCCTTCCGAATATTATTGTCTCAAACATGCACTAAACATTCAAGTTAACTCGGCCTAAAAATCTACCAAAGAGGATGTTTACCAACACGGACCACCTCCATTGTGAATGTAACAGTCCAGCCTACCGCTAACAGATATTGTCTTTTTTGAGCTTTCATTTTTGGACTTCCCCTCAAGGTTTTAAAATGTGTCCACCTGGGAAAGGCATCCACACTTTTATAAGGAATGCTTTGTTCCCCTCTCCAACCGACGTGGAGTCCCACAATCCACTCCACTTGAGGGCCAATGTCCTCACAGGCACGCCATTACACCACATCTTCATTCATTTTTTTTTTCTCATTCAATTTAGGGAAGAGCAAAAAAAAATTCATACCAACTTCAGCTACTTTATATCAGTACAGTTGCCAAGTACTACACACTTAAAGAGCAAAGTCGAAATAAAAGCAGATAATCACGCTACTAGCAACCAAAAATTAATTAATAGCCTTGAAGTAATTTCATTCGCATGTCTTTAGAATACTGTTATGTTTTAGTTTTTCTAAAGTATTTAATTTAAGACAGAAAGAGTGAGAGAAATTTCGTCCCAAATTTAGAAAGAAATGATGTATAGCAGATCTTCTAATTAAATCATCATTCATGAACCATTTTAAGCCAAGGCAGCTAGTATCTGTTCTATTTACTTATTTTTGCATATACATACCAGAATTTCTTCTGAACACTTCAGAAATGAGAAAAATTTACCAATTTTTTTAAAAAGAATTGAAAATCCTTTTAACAAATAAAAAATGAGCTCTGATGCAAGGAAACAGAGGTAAAGGGTATTTTGTATCCTGTCGAATACTTAACTACCTTTCCCAATGTCAACTTCATACTCAGACAACCTAAAACATAACATAAAATCAAAACCCTATAGGATATATTTCATGATATTGGTACCTTAACTAAGTACTAAACAATTCTATATTTGTGAGATCGCCTTAATAAAGTGGAGAATGGAAAAAAAGATCAAATAGAATGTACATAATGTACCGAATTACGTCGTACGAGCACCATGTGTCCTCGATGCCCAAATGCCGAACAACACCAGGAACAAAAAGATGAACAAAATAGCCCAATATCGTGCAAGACTGTATTTTATCCTGGTAAGCACAAACTAGATAAATGGAAGGAATAGAAGTCAGAAGGCTGAGCATTGAAGTTTATATTTCCAGAAGTAAACAAAAAATAAGAAATTAGATTTGATGTTTCCAAAATTTATATATAAATCAGAAACGTTCAAAATTAAAAAAAGGACTCGAAGAGTTTTAAAAAAAAGACTAAACGTGTTTATA ATGTCTGTGTTGGCTGCGACCACTGCTCAGATTCTGTACAGCGAAGTTCATCACAATCAACACCAAATTCCGAGCAATGGGGGGAGGCGGTGTTTTGTGAACAGAGATTTTGGGTCTGTTTTATTTGGCCGGAGAAATGGGGAGCGGCGGAGGCTGCGGCGGAGGGAGTTCAGGATGGGGACGGAAGCTGGGTTTTGGCCGGATCTGTCCCGGCCGGCGATGGTGGAGATGGAGTCCATTGAGGATTCCGAGCAGCTTGATCGGATTTTGGCTCACGCCCAGGAACTGTCTCAGCCGGTTCTTATCGACTGA MSVLAATTAQILYSEVHHNQHQIPSNGGRRCFVNRDFGSVLFGRRNGERRRLRRREFRMGTEAGFWPDLSRPAMVEMESIEDSEQLDRILAHAQELSQPVLID Homology
BLAST of Cp4.1LG19g01080 vs. ExPASy Swiss-Prot
Match: Q9FG36 (Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=WCRKC1 PE=2 SV=3) HSP 1 Score: 48.5 bits (114), Expect = 5.2e-05 Identity = 18/39 (46.15%), Postives = 32/39 (82.05%), Query Frame = 0
BLAST of Cp4.1LG19g01080 vs. NCBI nr
Match: XP_023517975.1 (thioredoxin-like 3-1, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 206 bits (525), Expect = 7.49e-66 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
BLAST of Cp4.1LG19g01080 vs. NCBI nr
Match: KAG7027572.1 (Thioredoxin-like 3-1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 201 bits (510), Expect = 2.05e-64 Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 0
BLAST of Cp4.1LG19g01080 vs. NCBI nr
Match: KAG6595600.1 (Thioredoxin-like 3-1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 201 bits (510), Expect = 1.49e-63 Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 0
BLAST of Cp4.1LG19g01080 vs. NCBI nr
Match: XP_022924923.1 (thioredoxin-like 3-1, chloroplastic [Cucurbita moschata]) HSP 1 Score: 199 bits (506), Expect = 6.03e-63 Identity = 99/103 (96.12%), Postives = 100/103 (97.09%), Query Frame = 0
BLAST of Cp4.1LG19g01080 vs. NCBI nr
Match: XP_022966464.1 (thioredoxin-like 3-1, chloroplastic [Cucurbita maxima]) HSP 1 Score: 198 bits (503), Expect = 1.73e-62 Identity = 99/103 (96.12%), Postives = 101/103 (98.06%), Query Frame = 0
BLAST of Cp4.1LG19g01080 vs. ExPASy TrEMBL
Match: A0A6J1EDU4 (thioredoxin-like 3-1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111432326 PE=4 SV=1) HSP 1 Score: 199 bits (506), Expect = 2.92e-63 Identity = 99/103 (96.12%), Postives = 100/103 (97.09%), Query Frame = 0
BLAST of Cp4.1LG19g01080 vs. ExPASy TrEMBL
Match: A0A6J1HTV8 (thioredoxin-like 3-1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466111 PE=4 SV=1) HSP 1 Score: 198 bits (503), Expect = 8.36e-63 Identity = 99/103 (96.12%), Postives = 101/103 (98.06%), Query Frame = 0
BLAST of Cp4.1LG19g01080 vs. ExPASy TrEMBL
Match: A0A5A7V069 (Thioredoxin-like 3-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold496G00060 PE=4 SV=1) HSP 1 Score: 110 bits (276), Expect = 2.81e-29 Identity = 61/103 (59.22%), Postives = 73/103 (70.87%), Query Frame = 0
BLAST of Cp4.1LG19g01080 vs. ExPASy TrEMBL
Match: A0A5D3C8R2 (Thioredoxin-like 3-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold427G00010 PE=4 SV=1) HSP 1 Score: 110 bits (276), Expect = 7.23e-29 Identity = 61/103 (59.22%), Postives = 73/103 (70.87%), Query Frame = 0
BLAST of Cp4.1LG19g01080 vs. ExPASy TrEMBL
Match: A0A1S3B504 (thioredoxin-like 3-1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486084 PE=4 SV=1) HSP 1 Score: 110 bits (276), Expect = 1.56e-28 Identity = 61/103 (59.22%), Postives = 73/103 (70.87%), Query Frame = 0
BLAST of Cp4.1LG19g01080 vs. TAIR 10
Match: AT5G06690.1 (WCRKC thioredoxin 1 ) HSP 1 Score: 48.5 bits (114), Expect = 3.7e-06 Identity = 18/39 (46.15%), Postives = 32/39 (82.05%), Query Frame = 0
BLAST of Cp4.1LG19g01080 vs. TAIR 10
Match: AT5G06690.2 (WCRKC thioredoxin 1 ) HSP 1 Score: 48.5 bits (114), Expect = 3.7e-06 Identity = 18/39 (46.15%), Postives = 32/39 (82.05%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|