Cp4.1LG19g00880 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG19g00880
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1
Location	Cp4.1LG19: 619417 .. 619769 (-)
RNA-Seq Expression	Cp4.1LG19g00880
Synteny	Cp4.1LG19g00880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCAGCTGTTCTTCGCCGTCGCTTTCTCCGCAGTGCCATTGACGCTCTATGTGTCGCCAATTCGGAGCCTCAATTTGTTCGTCGAAACCCTAGAGGAACTTCTCCGTGACTCCGCCGCTCATACGCTCACACTTTATCCTCGCTTTCGCCAAGCCTTCTCTCGCCTCTTCGCCTCTATATTCCGCGTTTCTAATTCCAGGTAGATTCGTTTCCATTCGATTCGGTTCTTCTTTAATCTCAGCGACTTACTTGAGGCTTTTTGTTTCGCCGATTGCTGGTGTTGGTGGTGTTTGATTTTGGACATTCGATTGATTCGTGCTGTTTGATTTGGATTAGGATTTTTGTTTAG

mRNA sequence

ATGCTTCAGCTGTTCTTCGCCGTCGCTTTCTCCGCAGTGCCATTGACGCTCTATGTGTCGCCAATTCGGAGCCTCAATTTGTTCGTCGAAACCCTAGAGGAACTTCTCCGTGACTCCGCCGCTCATACGCTCACACTTTATCCTCGCTTTCGCCAAGCCTTCTCTCGCCTCTTCGCCTCTATATTCCGCGTTTCTAATTCCAGGATTTTTGTTTAG

Coding sequence (CDS)

ATGCTTCAGCTGTTCTTCGCCGTCGCTTTCTCCGCAGTGCCATTGACGCTCTATGTGTCGCCAATTCGGAGCCTCAATTTGTTCGTCGAAACCCTAGAGGAACTTCTCCGTGACTCCGCCGCTCATACGCTCACACTTTATCCTCGCTTTCGCCAAGCCTTCTCTCGCCTCTTCGCCTCTATATTCCGCGTTTCTAATTCCAGGATTTTTGTTTAG

Protein sequence

MLQLFFAVAFSAVPLTLYVSPIRSLNLFVETLEELLRDSAAHTLTLYPRFRQAFSRLFASIFRVSNSRIFV

Homology

[Close]

BLAST of Cp4.1LG19g00880 vs. NCBI nr
Match: KAG6595630.1 (hypothetical protein SDJN03_12183, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027603.1 hypothetical protein SDJN02_11617, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120 bits (302), Expect = 1.87e-33
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVSPIRSLNLFVETLEELLRDSAAHTLTLYPRFRQAFSRLFAS 60
          MLQLFFAVAFSAVPLTLYV PIRSLNLFVETLEELLRDSAAHTL +YPRFRQAFSRLFAS
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60

Query: 61 IFRVSNSRI 69
          IFRVSNSR+
Sbjct: 61 IFRVSNSRL 69

[Close]

BLAST of Cp4.1LG19g00880 vs. NCBI nr
Match: KAA0060071.1 (RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 [Cucumis melo var. makuwa] >TYK29882.1 RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (249), Expect = 5.53e-26
Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVSPIRSLNLFVETLEELLRDSAAHTLTLYPRFRQAFSRLFAS 60
          MLQLFFAVAFSAVPLTLYV PIRSL+LFVETLE+LL  +A HT+  YPRFR AFSRLFAS
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61 IFRVSNSR 68
           FRVS SR
Sbjct: 61 FFRVSYSR 68

[Close]

BLAST of Cp4.1LG19g00880 vs. NCBI nr
Match: KAE8649764.1 (hypothetical protein Csa_012384 [Cucumis sativus])

HSP 1 Score: 101 bits (252), Expect = 2.18e-25
Identity = 55/68 (80.88%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVSPIRSLNLFVETLEELLRDSAAHTLTLYPRFRQAFSRLFAS 60
          MLQLFFAVAFSAVPLTLYV PIRSL+LFVETLE+LL  +A HT+  YPRFR AFSRLFAS
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61 IFRVSNSR 68
          +FRVS SR
Sbjct: 61 VFRVSYSR 68

[Close]

BLAST of Cp4.1LG19g00880 vs. NCBI nr
Match: KAG6603254.1 (hypothetical protein SDJN03_03863, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.7 bits (239), Expect = 3.39e-24
Identity = 52/68 (76.47%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVSPIRSLNLFVETLEELLRDSAAHTLTLYPRFRQAFSRLFAS 60
          MLQLFFAVAFSA PLT YV PIRSLNLFVETLE+L R +A HT   YPRFR AFSR+F S
Sbjct: 1  MLQLFFAVAFSAAPLTFYVPPIRSLNLFVETLEDLFRHTATHTHRAYPRFRLAFSRVFGS 60

Query: 61 IFRVSNSR 68
          +FRVS SR
Sbjct: 61 VFRVSYSR 68

[Close]

BLAST of Cp4.1LG19g00880 vs. NCBI nr
Match: KAG7037385.1 (hypothetical protein SDJN02_01010, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 96.7 bits (239), Expect = 3.39e-24
Identity = 52/68 (76.47%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVSPIRSLNLFVETLEELLRDSAAHTLTLYPRFRQAFSRLFAS 60
          MLQLFFAVAFSA PLT YV PIRSLNLFVETLE+L R +A HT   YPRFR AFSR+F S
Sbjct: 1  MLQLFFAVAFSAAPLTFYVPPIRSLNLFVETLEDLFRHTATHTHRAYPRFRLAFSRVFGS 60

Query: 61 IFRVSNSR 68
          +FRVS SR
Sbjct: 61 VFRVSYSR 68

[Close]

BLAST of Cp4.1LG19g00880 vs. ExPASy TrEMBL
Match: A0A5A7V2T5 (RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001360 PE=4 SV=1)

HSP 1 Score: 100 bits (249), Expect = 2.68e-26
Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVSPIRSLNLFVETLEELLRDSAAHTLTLYPRFRQAFSRLFAS 60
          MLQLFFAVAFSAVPLTLYV PIRSL+LFVETLE+LL  +A HT+  YPRFR AFSRLFAS
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61 IFRVSNSR 68
           FRVS SR
Sbjct: 61 FFRVSYSR 68

[Close]

BLAST of Cp4.1LG19g00880 vs. ExPASy TrEMBL
Match: A0A0A0KZF7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569720 PE=4 SV=1)

HSP 1 Score: 101 bits (252), Expect = 1.18e-25
Identity = 55/68 (80.88%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVSPIRSLNLFVETLEELLRDSAAHTLTLYPRFRQAFSRLFAS 60
          MLQLFFAVAFSAVPLTLYV PIRSL+LFVETLE+LL  +A HT+  YPRFR AFSRLFAS
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61 IFRVSNSR 68
          +FRVS SR
Sbjct: 61 VFRVSYSR 68

[Close]

BLAST of Cp4.1LG19g00880 vs. ExPASy TrEMBL
Match: B9SL52 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0089370 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.08e-23
Identity = 48/66 (72.73%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVSPIRSLNLFVETLEELLRDSAAHTLTLYPRFRQAFSRLFAS 60
          MLQ+FFAVAFSAVPLTLYV PIRSLNLF+ET+EELLR S ++T+  YPR R AFSRLF++
Sbjct: 1  MLQIFFAVAFSAVPLTLYVPPIRSLNLFLETIEELLRQSTSYTIQAYPRIRLAFSRLFSN 60

Query: 61 IFRVSN 66
          +FR+S+
Sbjct: 61 LFRLSS 66

[Close]

BLAST of Cp4.1LG19g00880 vs. ExPASy TrEMBL
Match: A0A2C9V7E1 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G026700 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.19e-23
Identity = 48/66 (72.73%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVSPIRSLNLFVETLEELLRDSAAHTLTLYPRFRQAFSRLFAS 60
          MLQLFFAVAFSAVPLTLYV PIRSLN FVET+E+LLR +A ++L  YPRFR AFSR+F++
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNPFVETIEDLLRQTAFYSLRAYPRFRLAFSRIFSN 60

Query: 61 IFRVSN 66
          +FR+S 
Sbjct: 61 LFRLSR 66

[Close]

BLAST of Cp4.1LG19g00880 vs. ExPASy TrEMBL
Match: A0A6P6AMC9 (uncharacterized protein LOC111310902 isoform X2 OS=Durio zibethinus OX=66656 GN=LOC111310902 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.88e-22
Identity = 47/66 (71.21%), Postives = 55/66 (83.33%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVSPIRSLNLFVETLEELLRDSAAHTLTLYPRFRQAFSRLFAS 60
          MLQLFFAVAFSAVPLTLYV PIRSLNLFVET+E++LR +  +TL  YPR R  FSR+F S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETIEDMLRQTTLYTLRAYPRIRLGFSRIFGS 60

Query: 61 IFRVSN 66
          IF +S+
Sbjct: 61 IFHLSS 66

[Close]

BLAST of Cp4.1LG19g00880 vs. TAIR 10
Match: AT3G52105.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 1.5e-11
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVSPIRSLNLFVETLEELLRDSAAHTLTLYPRFRQAFSRLFAS 60
          MLQLFF +AFSA PLTLY+ PIR L +FVET+EE+  +   ++  L+PR R A+SRL   
Sbjct: 1  MLQLFFTIAFSAAPLTLYIPPIRCLTVFVETMEEMGMEGRVYSWRLFPRARIAWSRLLDC 60

Query: 61 IFRVS 66
           F  S
Sbjct: 61 FFSSS 65

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g00880 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG19g00880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595630.1	1.87e-33	94.20	hypothetical protein SDJN03_12183, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0060071.1	5.53e-26	80.88	RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 [Cucumis melo ...	[more]
KAE8649764.1	2.18e-25	80.88	hypothetical protein Csa_012384 [Cucumis sativus]	[more]
KAG6603254.1	3.39e-24	76.47	hypothetical protein SDJN03_03863, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7037385.1	3.39e-24	76.47	hypothetical protein SDJN02_01010, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Cp4.1LG19g00880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V2T5	2.68e-26	80.88	RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 OS=Cucumis mel...	[more]
A0A0A0KZF7	1.18e-25	80.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569720 PE=4 SV=1	[more]
B9SL52	2.08e-23	72.73	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0089370 PE=4 SV=1	[more]
A0A2C9V7E1	8.19e-23	72.73	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G026700 PE=4 SV=...	[more]
A0A6P6AMC9	5.88e-22	71.21	uncharacterized protein LOC111310902 isoform X2 OS=Durio zibethinus OX=66656 GN=...	[more]

BLAST of Cp4.1LG19g00880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52105.1	1.5e-11	53.85	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36616	BNAC07G32700D PROTEIN	coord: 1..66
None	No IPR available	PANTHER	PTHR36616:SF5	DIS3-EXONUCLEASE-LIKE PROTEIN	coord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG19g00880.1	Cp4.1LG19g00880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane