Cp4.1LG19g00370 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG19g00370
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionEukaryotic translation initiation factor 3 subunit E
LocationCp4.1LG19: 275180 .. 275598 (-)
RNA-Seq ExpressionCp4.1LG19g00370
SyntenyCp4.1LG19g00370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATGGGTGGGAGCAAAAGAGGAAGAAAGGAGGTTTTACTCTAAGTTTGTAGTAAGATTGCCTTCAGCCAGTTAGTAACAGATCTGATTCTAAATCCTCTCTTTTAGTGCTGCTAAATAATGAGGTTCTCTAATGTATAAAGCTTGGTTCTCAGGATTTGGATTGGTAAAACAATACTTCCTGACCATTATTGTATATCTTCTGTCATTATAACTTGTGACTTTTCTTGGTTCATTTCGTTGTTATTATCTCAAGTGCTGGTAACTTGTGGCAGCGTCCTTGCTGAAAAGTTGAACTTGAATTATGAGGAAGCTGAGCGGTGGATTGTAAATCTCGTGCGCACGTCAAAGCTTGATGCAAAGCTTGATTCAAAGACAGGAACGGTTATAATGGAAACGAACGAGCCTGACGTGTAA

mRNA sequence

ATGGGATGGGTGGGAGCAAAAGAGGAAGAAAGGAGGTTTTACTCTAAGATTTGGATTGGTAAAACAATACTTCCTGACCATTATTGTATATCTTCTGTCATTATAACTTGTGACTTTTCTTGGTTCATTTCGTTGTTATTATCTCAAGTGCTGGTAACTTGTGGCAGCGTCCTTGCTGAAAAGTTGAACTTGAATTATGAGGAAGCTGAGCGGTGGATTGTAAATCTCGTGCGCACGTCAAAGCTTGATGCAAAGCTTGATTCAAAGACAGGAACGGTTATAATGGAAACGAACGAGCCTGACGTGTAA

Coding sequence (CDS)

ATGGGATGGGTGGGAGCAAAAGAGGAAGAAAGGAGGTTTTACTCTAAGATTTGGATTGGTAAAACAATACTTCCTGACCATTATTGTATATCTTCTGTCATTATAACTTGTGACTTTTCTTGGTTCATTTCGTTGTTATTATCTCAAGTGCTGGTAACTTGTGGCAGCGTCCTTGCTGAAAAGTTGAACTTGAATTATGAGGAAGCTGAGCGGTGGATTGTAAATCTCGTGCGCACGTCAAAGCTTGATGCAAAGCTTGATTCAAAGACAGGAACGGTTATAATGGAAACGAACGAGCCTGACGTGTAA

Protein sequence

MGWVGAKEEERRFYSKIWIGKTILPDHYCISSVIITCDFSWFISLLLSQVLVTCGSVLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV
Homology
[Close]
BLAST of Cp4.1LG19g00370 vs. ExPASy Swiss-Prot
Match: Q9C5Z3 (Eukaryotic translation initiation factor 3 subunit E OS=Arabidopsis thaliana OX=3702 GN=TIF3E1 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-14
Identity = 38/46 (82.61%), Postives = 44/46 (95.65%), Query Frame = 0 

Query: 57  VLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV 103
           VLAEKLNLNYEEAERWIVNL+RTSKLDAK+DS++GTVIME  +P+V
Sbjct: 364 VLAEKLNLNYEEAERWIVNLIRTSKLDAKIDSESGTVIMEPTQPNV 409

[Close]
BLAST of Cp4.1LG19g00370 vs. ExPASy Swiss-Prot
Match: A7RWP6 (Eukaryotic translation initiation factor 3 subunit E OS=Nematostella vectensis OX=45351 GN=v1g163572 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.1e-10
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 56  SVLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV 103
           S+LAEKLN+  EEAERWIVNL+R +KLDAK+DSK G V+M    P V
Sbjct: 352 SMLAEKLNMTPEEAERWIVNLIRNAKLDAKIDSKLGHVVMGVQAPSV 398

[Close]
BLAST of Cp4.1LG19g00370 vs. ExPASy Swiss-Prot
Match: Q05AY2 (Eukaryotic translation initiation factor 3 subunit E-A OS=Xenopus laevis OX=8355 GN=eif3e-a PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-08
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 0 

Query: 56  SVLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETN 99
           S+LA+KLN+  EEAERWIVNL+R ++LDAK+DSK G V+M  N
Sbjct: 355 SMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNN 397

[Close]
BLAST of Cp4.1LG19g00370 vs. ExPASy Swiss-Prot
Match: Q1LUA8 (Eukaryotic translation initiation factor 3 subunit E-B OS=Danio rerio OX=7955 GN=eif3eb PE=3 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-08
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 0 

Query: 56  SVLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETN 99
           S+LA+KLN+  EEAERWIVNL+R ++LDAK+DSK G V+M  N
Sbjct: 355 SMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNN 397

[Close]
BLAST of Cp4.1LG19g00370 vs. ExPASy Swiss-Prot
Match: Q3B8M3 (Eukaryotic translation initiation factor 3 subunit E-B OS=Xenopus laevis OX=8355 GN=eif3e-b PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-08
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 0 

Query: 56  SVLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETN 99
           S+LA+KLN+  EEAERWIVNL+R ++LDAK+DSK G V+M  N
Sbjct: 355 SMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNN 397

[Close]
BLAST of Cp4.1LG19g00370 vs. NCBI nr
Match: XP_023518937.1 (eukaryotic translation initiation factor 3 subunit E [Cucurbita pepo subsp. pepo])

HSP 1 Score: 93.2 bits (230), Expect = 1.15e-19
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 56  SVLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV 102
           SVLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV
Sbjct: 359 SVLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV 405

[Close]
BLAST of Cp4.1LG19g00370 vs. NCBI nr
Match: KAG7027648.1 (Eukaryotic translation initiation factor 3 subunit E, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.4 bits (228), Expect = 2.19e-19
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 56  SVLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV 102
           SVLAEKLNLNYEEAERWIVNLVRTSKLDAK+DSKTGTVIMETNEPDV
Sbjct: 359 SVLAEKLNLNYEEAERWIVNLVRTSKLDAKIDSKTGTVIMETNEPDV 405

[Close]
BLAST of Cp4.1LG19g00370 vs. NCBI nr
Match: XP_022966317.1 (eukaryotic translation initiation factor 3 subunit E [Cucurbita maxima])

HSP 1 Score: 92.4 bits (228), Expect = 2.19e-19
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 56  SVLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV 102
           SVLAEKLNLNYEEAERWIVNLVRTSKLDAK+DSKTGTVIMETNEPDV
Sbjct: 359 SVLAEKLNLNYEEAERWIVNLVRTSKLDAKIDSKTGTVIMETNEPDV 405

[Close]
BLAST of Cp4.1LG19g00370 vs. NCBI nr
Match: KAG6595686.1 (Eukaryotic translation initiation factor 3 subunit E, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.4 bits (228), Expect = 2.84e-19
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 56  SVLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV 102
           SVLAEKLNLNYEEAERWIVNLVRTSKLDAK+DSKTGTVIMETNEPDV
Sbjct: 359 SVLAEKLNLNYEEAERWIVNLVRTSKLDAKIDSKTGTVIMETNEPDV 405

[Close]
BLAST of Cp4.1LG19g00370 vs. NCBI nr
Match: XP_022925104.1 (eukaryotic translation initiation factor 3 subunit E-like [Cucurbita moschata])

HSP 1 Score: 89.4 bits (220), Expect = 2.84e-18
Identity = 44/47 (93.62%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 56  SVLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV 102
           SVLAEKLNLNYEEAE+WIVNLVRTSKLDAK+DSKTGTVIMETN+PDV
Sbjct: 359 SVLAEKLNLNYEEAEQWIVNLVRTSKLDAKIDSKTGTVIMETNKPDV 405

[Close]
BLAST of Cp4.1LG19g00370 vs. ExPASy TrEMBL
Match: A0A6J1HMM9 (Eukaryotic translation initiation factor 3 subunit E OS=Cucurbita maxima OX=3661 GN=LOC111466010 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.06e-19
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 56  SVLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV 102
           SVLAEKLNLNYEEAERWIVNLVRTSKLDAK+DSKTGTVIMETNEPDV
Sbjct: 359 SVLAEKLNLNYEEAERWIVNLVRTSKLDAKIDSKTGTVIMETNEPDV 405

[Close]
BLAST of Cp4.1LG19g00370 vs. ExPASy TrEMBL
Match: A0A6J1EB55 (Eukaryotic translation initiation factor 3 subunit E OS=Cucurbita moschata OX=3662 GN=LOC111432445 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.38e-18
Identity = 44/47 (93.62%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 56  SVLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV 102
           SVLAEKLNLNYEEAE+WIVNLVRTSKLDAK+DSKTGTVIMETN+PDV
Sbjct: 359 SVLAEKLNLNYEEAEQWIVNLVRTSKLDAKIDSKTGTVIMETNKPDV 405

[Close]
BLAST of Cp4.1LG19g00370 vs. ExPASy TrEMBL
Match: A0A6J1EKJ5 (Eukaryotic translation initiation factor 3 subunit E OS=Cucurbita moschata OX=3662 GN=LOC111435512 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.33e-18
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 0 

Query: 56  SVLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV 102
           SVLAEKLNLNYEEAERWIVNLVRTSKLDAK+DSKTGTVIME N+P+V
Sbjct: 359 SVLAEKLNLNYEEAERWIVNLVRTSKLDAKIDSKTGTVIMEPNQPNV 405

[Close]
BLAST of Cp4.1LG19g00370 vs. ExPASy TrEMBL
Match: A0A199UAE0 (PCI domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_S071900 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.45e-17
Identity = 38/46 (82.61%), Postives = 44/46 (95.65%), Query Frame = 0 

Query: 57  VLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV 102
           VLAEKLNLNYEEAERWIVNL+R SKLDAK+DS++GTVIME N+P+V
Sbjct: 3   VLAEKLNLNYEEAERWIVNLIRNSKLDAKIDSQSGTVIMEPNQPNV 48

[Close]
BLAST of Cp4.1LG19g00370 vs. ExPASy TrEMBL
Match: A0A2P5AQU8 (Eukaryotic translation initiation factor 3 subunit E OS=Trema orientale OX=63057 GN=TorRG33x02_343960 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.50e-17
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 0 

Query: 57  VLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV 102
           VLAEKLNLNYEEAERWIVNL+RTSKLDAK+DSKTGTV+ME N P+V
Sbjct: 223 VLAEKLNLNYEEAERWIVNLIRTSKLDAKIDSKTGTVVMEPNHPNV 268

[Close]
BLAST of Cp4.1LG19g00370 vs. TAIR 10
Match: AT3G57290.1 (eukaryotic translation initiation factor 3E )

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-15
Identity = 38/46 (82.61%), Postives = 44/46 (95.65%), Query Frame = 0 

Query: 57  VLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV 103
           VLAEKLNLNYEEAERWIVNL+RTSKLDAK+DS++GTVIME  +P+V
Sbjct: 364 VLAEKLNLNYEEAERWIVNLIRTSKLDAKIDSESGTVIMEPTQPNV 409

The following BLAST results are available for this feature:
BLAST of Cp4.1LG19g00370 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9C5Z31.6e-1482.61Eukaryotic translation initiation factor 3 subunit E OS=Arabidopsis thaliana OX=... [more]
A7RWP69.1e-1065.96Eukaryotic translation initiation factor 3 subunit E OS=Nematostella vectensis O... [more]
Q05AY21.0e-0865.12Eukaryotic translation initiation factor 3 subunit E-A OS=Xenopus laevis OX=8355... [more]
Q1LUA81.0e-0865.12Eukaryotic translation initiation factor 3 subunit E-B OS=Danio rerio OX=7955 GN... [more]
Q3B8M31.0e-0865.12Eukaryotic translation initiation factor 3 subunit E-B OS=Xenopus laevis OX=8355... [more]
BLAST of Cp4.1LG19g00370 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023518937.11.15e-19100.00eukaryotic translation initiation factor 3 subunit E [Cucurbita pepo subsp. pepo... [more]
KAG7027648.12.19e-1997.87Eukaryotic translation initiation factor 3 subunit E, partial [Cucurbita argyros... [more]
XP_022966317.12.19e-1997.87eukaryotic translation initiation factor 3 subunit E [Cucurbita maxima][more]
KAG6595686.12.84e-1997.87Eukaryotic translation initiation factor 3 subunit E, partial [Cucurbita argyros... [more]
XP_022925104.12.84e-1893.62eukaryotic translation initiation factor 3 subunit E-like [Cucurbita moschata][more]
BLAST of Cp4.1LG19g00370 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HMM91.06e-1997.87Eukaryotic translation initiation factor 3 subunit E OS=Cucurbita maxima OX=3661... [more]
A0A6J1EB551.38e-1893.62Eukaryotic translation initiation factor 3 subunit E OS=Cucurbita moschata OX=36... [more]
A0A6J1EKJ59.33e-1891.49Eukaryotic translation initiation factor 3 subunit E OS=Cucurbita moschata OX=36... [more]
A0A199UAE01.45e-1782.61PCI domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_S071900 PE=4... [more]
A0A2P5AQU84.50e-1786.96Eukaryotic translation initiation factor 3 subunit E OS=Trema orientale OX=63057... [more]
BLAST of Cp4.1LG19g00370 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G57290.11.1e-1582.61eukaryotic translation initiation factor 3E [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000717Proteasome component (PCI) domainPFAMPF01399PCIcoord: 56..96
e-value: 1.3E-8
score: 35.3
IPR016650Eukaryotic translation initiation factor 3 subunit EPANTHERPTHR10317EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT Ecoord: 57..101
NoneNo IPR availablePANTHERPTHR10317:SF0EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT Ecoord: 57..101
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 56..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g00370.1Cp4.1LG19g00370.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001732 formation of cytoplasmic translation initiation complex
cellular_component GO:0016282 eukaryotic 43S preinitiation complex
cellular_component GO:0033290 eukaryotic 48S preinitiation complex
cellular_component GO:0071540 eukaryotic translation initiation factor 3 complex, eIF3e
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
molecular_function GO:0003743 translation initiation factor activity