Cp4.1LG19g00360 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG19g00360
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	F-box domain-containing protein
Location	Cp4.1LG19: 239456 .. 240558 (+)
RNA-Seq Expression	Cp4.1LG19g00360
Synteny	Cp4.1LG19g00360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCAATCTCTTCAACCTCCTCCATCCCCGCCGCCGTGGGAGGTGCTGCTTCTCGTCGCCGAACGCCTCGACCCCAGAACACTCGCCACCGCCTCCTGCGTCTGCAAATCCTGGTCCATTTCCATGGCCTCCAACAATCTCTGGGAGCCAATTTTTAGTGCCAAATTCCCTTCTCTCACTAACCTCGCCGCCTCCTCCGCCACCACGTCACCTCCCGTGTCCTTCCGCCGCCTCTTTGGCCTCGGCCACACCGCTGCAGCTCGTCGCCGCCCCGCTCCCTCAAAACCCATCCTCTGCCTATCCGACCTCGTCTTCGTCATCAGCGTCTCCAGCACCGACAAAGCTGACCGTTGTATTGTCGGTGCCGGAGCCAAGAAGGAAGAAAAGGGTAATAATCATTTTTATTCTCTTAACTTAATTCTTGAATTATTAAGTACAAGAACTAGAGGTCGGGTTGAAAGTCAGATTTTCATGGTGGTTCGTTTAAATAGGATGCAAGCTACCCTAAATTAATTATTTTAAAAAAAATAAAGGAAAAATCTAATTGCTCTATCTAAATTTATAATTTAAATCGAATTTGATAGGGTTTATAAAACCAAATGGAGTATTGAAATCAACCCTAATGAAATTTTGTAGATGTGCCCGAACCCATGTTCACCGTTGTGAAGCACGGCGGCGAGCTAGCGGTGGACCGAAACGGGCTGTTCAAATTCGACATAAATGTCAGCAACAGCGACGAGGTGGTGGTGATCGGAGCTGGAGAGGAGGTGGGGGTGGTGTGGAACGTGGTGCTGGAAGGATGGAGGGCGGTGTTCACAATGATTGAATGTGGAGGAAGAGTGGGAATGGCGCCGAGAGCGGACGGGTGGTTCTCGGAGGAGCTGCCGGCGGCGGGGTGCTGCCCGAAGGAGGTGAGCGGCGGCATAGTGGCGGATCTGAAACTGGGGGTGTGTAAAAATGGGGAGGGTGGAAAGAATGATAAGGTTAGGATTGAAAGCGTGAGTGTGGGAATGATGAGTGTATTGAGTTGGAGATATGTGAGTTTGGATGATGGGTTGATGTATTTGCAGCATTTTTTGTTCAATCCTTACAAAAATTAG

mRNA sequence

ATGGCGCAATCTCTTCAACCTCCTCCATCCCCGCCGCCGTGGGAGGTGCTGCTTCTCGTCGCCGAACGCCTCGACCCCAGAACACTCGCCACCGCCTCCTGCGTCTGCAAATCCTGGTCCATTTCCATGGCCTCCAACAATCTCTGGGAGCCAATTTTTAGTGCCAAATTCCCTTCTCTCACTAACCTCGCCGCCTCCTCCGCCACCACGTCACCTCCCGTGTCCTTCCGCCGCCTCTTTGGCCTCGGCCACACCGCTGCAGCTCGTCGCCGCCCCGCTCCCTCAAAACCCATCCTCTGCCTATCCGACCTCGTCTTCGTCATCAGCGTCTCCAGCACCGACAAAGCTGACCGTTGTATTGTCGATGTGCCCGAACCCATGTTCACCGTTGTGAAGCACGGCGGCGAGCTAGCGGTGGACCGAAACGGGCTGTTCAAATTCGACATAAATGTCAGCAACAGCGACGAGGTGGTGGTGATCGGAGCTGGAGAGGAGGTGGGGGTGGTGTGGAACGTGGTGCTGGAAGGATGGAGGGCGGTGTTCACAATGATTGAATGTGGAGGAAGAGTGGGAATGGCGCCGAGAGCGGACGGGTGGTTCTCGGAGGAGCTGCCGGCGGCGGGGTGCTGCCCGAAGGAGGTGAGCGGCGGCATAGTGGCGGATCTGAAACTGGGGGTGTGTAAAAATGGGGAGGGTGGAAAGAATGATAAGGTTAGGATTGAAAGCGTGAGTGTGGGAATGATGAGTGTATTGAGTTGGAGATATGTGAGTTTGGATGATGGGTTGATGTATTTGCAGCATTTTTTGTTCAATCCTTACAAAAATTAG

Coding sequence (CDS)

ATGGCGCAATCTCTTCAACCTCCTCCATCCCCGCCGCCGTGGGAGGTGCTGCTTCTCGTCGCCGAACGCCTCGACCCCAGAACACTCGCCACCGCCTCCTGCGTCTGCAAATCCTGGTCCATTTCCATGGCCTCCAACAATCTCTGGGAGCCAATTTTTAGTGCCAAATTCCCTTCTCTCACTAACCTCGCCGCCTCCTCCGCCACCACGTCACCTCCCGTGTCCTTCCGCCGCCTCTTTGGCCTCGGCCACACCGCTGCAGCTCGTCGCCGCCCCGCTCCCTCAAAACCCATCCTCTGCCTATCCGACCTCGTCTTCGTCATCAGCGTCTCCAGCACCGACAAAGCTGACCGTTGTATTGTCGATGTGCCCGAACCCATGTTCACCGTTGTGAAGCACGGCGGCGAGCTAGCGGTGGACCGAAACGGGCTGTTCAAATTCGACATAAATGTCAGCAACAGCGACGAGGTGGTGGTGATCGGAGCTGGAGAGGAGGTGGGGGTGGTGTGGAACGTGGTGCTGGAAGGATGGAGGGCGGTGTTCACAATGATTGAATGTGGAGGAAGAGTGGGAATGGCGCCGAGAGCGGACGGGTGGTTCTCGGAGGAGCTGCCGGCGGCGGGGTGCTGCCCGAAGGAGGTGAGCGGCGGCATAGTGGCGGATCTGAAACTGGGGGTGTGTAAAAATGGGGAGGGTGGAAAGAATGATAAGGTTAGGATTGAAAGCGTGAGTGTGGGAATGATGAGTGTATTGAGTTGGAGATATGTGAGTTTGGATGATGGGTTGATGTATTTGCAGCATTTTTTGTTCAATCCTTACAAAAATTAG

Protein sequence

MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSLTNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILCLSDLVFVISVSSTDKADRCIVDVPEPMFTVVKHGGELAVDRNGLFKFDINVSNSDEVVVIGAGEEVGVVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGEGGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNPYKN

Homology

[Close]

BLAST of Cp4.1LG19g00360 vs. ExPASy Swiss-Prot
Match: Q5EAF6 (Probable F-box protein At5g04010 OS=Arabidopsis thaliana OX=3702 GN=NSFBx PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.6e-23
Identity = 81/263 (30.80%), Postives = 127/263 (48.29%), Query Frame = 0


Query: 9   PSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSLTNLAASSA 68
           PSPP WE+L LV   +DP +LA ASCV  +WS   +S +LW+ + + +            
Sbjct: 50  PSPPSWEILCLVGPYMDPESLAVASCVSTTWSKCFSSEDLWKSLPATRHSIFAKAITKEG 109

Query: 69  TTSPPVSFRRLFGLGHTAAARRR-PAPSKPILCLSDLVFVISVSSTDKADRCIVDVPEPM 128
                +S++RL     +AA RRR   P++P + LSDLVF++ VS+  K            
Sbjct: 110 AKPAWLSYKRLISEAESAAKRRRNNQPAEPKISLSDLVFIVHVSAGSKE----------- 169

Query: 129 FTVVKHGGELAVDRNGLFKFDINVSNSDEVVVIGAGEEVGVVWNVVLEGWRAVFTMIECG 188
             VVK G +L    N  F+ + +V +S     +   ++V + WNVVL  +  +F M E  
Sbjct: 170 AVVVKQGKDLVFGSNERFQIEADVRDSGFTADM---KDVSMSWNVVLRNYERMFLMSET- 229

Query: 189 GRVGMAPRADGWFSEELPAAGCCPKEVSG-GIVADLKLGVCKNGEGGKNDKVRIESVSVG 248
             +       GWF++ELP  G   +   G  +V ++K           N+ V ++ V   
Sbjct: 230 -VIKSLDSMIGWFTDELP--GTKNRYCDGSNLVGEVKPSF--------NEDV-LDKVVFA 285

Query: 249 MMSVLSWRYVSLDDGLMYLQHFL 270
           +    +W+ + +DD L YLQ FL
Sbjct: 290 IADSRNWKSLFVDDVLRYLQCFL 285

[Close]

BLAST of Cp4.1LG19g00360 vs. NCBI nr
Match: XP_023518459.1 (probable F-box protein At5g04010 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 548 bits (1413), Expect = 1.16e-196
Identity = 275/284 (96.83%), Postives = 275/284 (96.83%), Query Frame = 0


Query: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL 60
           MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL
Sbjct: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL 60

Query: 61  TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILCLSDLVFVISVSSTDKADRCI 120
           TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILCLSDLVFVISVSSTDKADRCI
Sbjct: 61  TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILCLSDLVFVISVSSTDKADRCI 120

Query: 121 V---------DVPEPMFTVVKHGGELAVDRNGLFKFDINVSNSDEVVVIGAGEEVGVVWN 180
           V         DVPEPMFTVVKHGGELAVDRNGLFKFDINVSNSDEVVVIGAGEEVGVVWN
Sbjct: 121 VGAGAKKEEKDVPEPMFTVVKHGGELAVDRNGLFKFDINVSNSDEVVVIGAGEEVGVVWN 180

Query: 181 VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE 240
           VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE
Sbjct: 181 VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE 240

Query: 241 GGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNPYKN 275
           GGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNPYKN
Sbjct: 241 GGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNPYKN 284

[Close]

BLAST of Cp4.1LG19g00360 vs. NCBI nr
Match: KAG7027654.1 (putative F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 528 bits (1359), Expect = 1.23e-188
Identity = 265/275 (96.36%), Postives = 267/275 (97.09%), Query Frame = 0


Query: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL 60
           MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL
Sbjct: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL 60

Query: 61  TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILCLSDLVFVISVSSTDKADRCI 120
           TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPIL LSDLVFVISVS TDKA+   
Sbjct: 61  TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKAN--- 120

Query: 121 VDVPEPMFTVVKHGGELAVDRNGLFKFDINVSNSDEVVVIGAGEEVGVVWNVVLEGWRAV 180
            DVPEPMFTVVKHG ELAVDRNGLFKFDINVSNSDEVVVIGAGEEV VVWNVVLEGWRAV
Sbjct: 121 -DVPEPMFTVVKHGSELAVDRNGLFKFDINVSNSDEVVVIGAGEEVEVVWNVVLEGWRAV 180

Query: 181 FTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGEGGKNDKVRI 240
           FTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGEGGKNDKVRI
Sbjct: 181 FTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGEGGKNDKVRI 240

Query: 241 ESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNPYKN 275
           ESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNP+KN
Sbjct: 241 ESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNPWKN 271

[Close]

BLAST of Cp4.1LG19g00360 vs. NCBI nr
Match: XP_022925168.1 (probable F-box protein At5g04010 [Cucurbita moschata])

HSP 1 Score: 524 bits (1349), Expect = 5.94e-187
Identity = 265/281 (94.31%), Postives = 266/281 (94.66%), Query Frame = 0


Query: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL 60
           MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL
Sbjct: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL 60

Query: 61  TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILCLSDLVFVISVSSTDKADRCI 120
           TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPIL LSDLVFVISVS TDKA+ CI
Sbjct: 61  TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKANGCI 120

Query: 121 V---------DVPEPMFTVVKHGGELAVDRNGLFKFDINVSNSDEVVVIGAGEEVGVVWN 180
           V         DVPEPMFTVVKHGGELAVDRN LFKFDINVSN DEVVVIGAGEEV VVWN
Sbjct: 121 VSGGTKKEEKDVPEPMFTVVKHGGELAVDRNRLFKFDINVSNGDEVVVIGAGEEVEVVWN 180

Query: 181 VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE 240
           VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE
Sbjct: 181 VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE 240

Query: 241 GGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNP 272
           GGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNP
Sbjct: 241 GGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNP 281

[Close]

BLAST of Cp4.1LG19g00360 vs. NCBI nr
Match: XP_022966422.1 (probable F-box protein At5g04010 [Cucurbita maxima])

HSP 1 Score: 506 bits (1304), Expect = 4.29e-180
Identity = 255/281 (90.75%), Postives = 260/281 (92.53%), Query Frame = 0


Query: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL 60
           MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASN+LWEPIFSAKFPSL
Sbjct: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNHLWEPIFSAKFPSL 60

Query: 61  TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILCLSDLVFVISVSSTDKADRCI 120
           TNLAASSAT SPP+SF RLFGLGHTAAARRRPAPSKPIL LSDL+FVISVS TDKAD CI
Sbjct: 61  TNLAASSATASPPLSFCRLFGLGHTAAARRRPAPSKPILSLSDLIFVISVSGTDKADGCI 120

Query: 121 V---------DVPEPMFTVVKHGGELAVDRNGLFKFDINVSNSDEVVVIGAGEEVGVVWN 180
           V         DVPE MFT+VKHGGEL VDRNGLFKFDINVS  DE VVIGAG EV VVWN
Sbjct: 121 VGGGATKEEKDVPELMFTIVKHGGELVVDRNGLFKFDINVSKGDEAVVIGAGGEVEVVWN 180

Query: 181 VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE 240
           VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE
Sbjct: 181 VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE 240

Query: 241 GGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNP 272
           GGKND+VRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNP
Sbjct: 241 GGKNDEVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNP 281

[Close]

BLAST of Cp4.1LG19g00360 vs. NCBI nr
Match: KAG6595690.1 (putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 454 bits (1167), Expect = 8.81e-151
Identity = 230/246 (93.50%), Postives = 232/246 (94.31%), Query Frame = 0


Query: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL 60
           MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASN+LWE IFSAKFPSL
Sbjct: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNHLWETIFSAKFPSL 60

Query: 61  TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILCLSDLVFVISVSSTDKADRCI 120
           TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPIL LSDLVFVISVS TDKA+ CI
Sbjct: 61  TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKANGCI 120

Query: 121 V---------DVPEPMFTVVKHGGELAVDRNGLFKFDINVSNSDEVVVIGAGEEVGVVWN 180
           V         DVPEPMFTVVKHGGELAVDRNGLFKFDINVSNSDEVVVIGAGEEV VVWN
Sbjct: 121 VSGGTKKEEKDVPEPMFTVVKHGGELAVDRNGLFKFDINVSNSDEVVVIGAGEEVEVVWN 180

Query: 181 VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE 237
           VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE
Sbjct: 181 VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE 240

[Close]

BLAST of Cp4.1LG19g00360 vs. ExPASy TrEMBL
Match: A0A6J1EEG3 (probable F-box protein At5g04010 OS=Cucurbita moschata OX=3662 GN=LOC111432489 PE=4 SV=1)

HSP 1 Score: 524 bits (1349), Expect = 2.88e-187
Identity = 265/281 (94.31%), Postives = 266/281 (94.66%), Query Frame = 0


Query: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL 60
           MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL
Sbjct: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL 60

Query: 61  TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILCLSDLVFVISVSSTDKADRCI 120
           TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPIL LSDLVFVISVS TDKA+ CI
Sbjct: 61  TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKANGCI 120

Query: 121 V---------DVPEPMFTVVKHGGELAVDRNGLFKFDINVSNSDEVVVIGAGEEVGVVWN 180
           V         DVPEPMFTVVKHGGELAVDRN LFKFDINVSN DEVVVIGAGEEV VVWN
Sbjct: 121 VSGGTKKEEKDVPEPMFTVVKHGGELAVDRNRLFKFDINVSNGDEVVVIGAGEEVEVVWN 180

Query: 181 VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE 240
           VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE
Sbjct: 181 VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE 240

Query: 241 GGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNP 272
           GGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNP
Sbjct: 241 GGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNP 281

[Close]

BLAST of Cp4.1LG19g00360 vs. ExPASy TrEMBL
Match: A0A6J1HMX9 (probable F-box protein At5g04010 OS=Cucurbita maxima OX=3661 GN=LOC111466077 PE=4 SV=1)

HSP 1 Score: 506 bits (1304), Expect = 2.08e-180
Identity = 255/281 (90.75%), Postives = 260/281 (92.53%), Query Frame = 0


Query: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSL 60
           MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASN+LWEPIFSAKFPSL
Sbjct: 1   MAQSLQPPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNHLWEPIFSAKFPSL 60

Query: 61  TNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILCLSDLVFVISVSSTDKADRCI 120
           TNLAASSAT SPP+SF RLFGLGHTAAARRRPAPSKPIL LSDL+FVISVS TDKAD CI
Sbjct: 61  TNLAASSATASPPLSFCRLFGLGHTAAARRRPAPSKPILSLSDLIFVISVSGTDKADGCI 120

Query: 121 V---------DVPEPMFTVVKHGGELAVDRNGLFKFDINVSNSDEVVVIGAGEEVGVVWN 180
           V         DVPE MFT+VKHGGEL VDRNGLFKFDINVS  DE VVIGAG EV VVWN
Sbjct: 121 VGGGATKEEKDVPELMFTIVKHGGELVVDRNGLFKFDINVSKGDEAVVIGAGGEVEVVWN 180

Query: 181 VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE 240
           VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE
Sbjct: 181 VVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGE 240

Query: 241 GGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNP 272
           GGKND+VRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNP
Sbjct: 241 GGKNDEVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFNP 281

[Close]

BLAST of Cp4.1LG19g00360 vs. ExPASy TrEMBL
Match: A0A5D3DEJ6 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00070 PE=4 SV=1)

HSP 1 Score: 395 bits (1016), Expect = 1.62e-136
Identity = 207/274 (75.55%), Postives = 229/274 (83.58%), Query Frame = 0


Query: 10  SPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSLTNLAASSAT 69
           SPPPWEV+LLVAERLDP+TLATASCVCKSWS+SMAS++LWEPIF+A FPSL NLA S+ T
Sbjct: 11  SPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPSLFNLA-SAPT 70

Query: 70  TSPPVSFRRLFGLGHTAAARRRPAPSKPILCLSDLVFVISVSSTDKADRCIVDV------ 129
           +SPPVSFRRLFGLG+ AAARRRPA  KP L LSDLVFVIS+S TDK D+ I+        
Sbjct: 71  SSPPVSFRRLFGLGYIAAARRRPAQLKPTLSLSDLVFVISISFTDK-DQSIIACDGVNKE 130

Query: 130 -----PEPMFTVVKHGGELAVDRNGLFKFDINVS-NSDEVVVIGAGEEVGVVWNVVLEGW 189
                P+   TVVKHG EL V+RNGLFKFDIN++ N    VVIGA EEV VVWN+VLEGW
Sbjct: 131 EKAPRPQSSLTVVKHGEELPVERNGLFKFDINLNENGAAPVVIGAREEVEVVWNIVLEGW 190

Query: 190 RAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGEGGKNDK 249
           R VFTMIECGGRVGMAPRADGWFSEELPAAGCCP  VSGGIV DL+LG+C  G GG ++K
Sbjct: 191 RGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVGDLRLGLC--GNGGGSNK 250

Query: 250 VRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFN 271
           VRIESVSVGMMSV+SWRYVSLDDGLMYLQHFLFN
Sbjct: 251 VRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFN 280

[Close]

BLAST of Cp4.1LG19g00360 vs. ExPASy TrEMBL
Match: A0A1S3BLJ1 (probable F-box protein At5g04010 OS=Cucumis melo OX=3656 GN=LOC103491161 PE=4 SV=1)

HSP 1 Score: 395 bits (1016), Expect = 1.62e-136
Identity = 207/274 (75.55%), Postives = 229/274 (83.58%), Query Frame = 0


Query: 10  SPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSLTNLAASSAT 69
           SPPPWEV+LLVAERLDP+TLATASCVCKSWS+SMAS++LWEPIF+A FPSL NLA S+ T
Sbjct: 11  SPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPSLFNLA-SAPT 70

Query: 70  TSPPVSFRRLFGLGHTAAARRRPAPSKPILCLSDLVFVISVSSTDKADRCIVDV------ 129
           +SPPVSFRRLFGLG+ AAARRRPA  KP L LSDLVFVIS+S TDK D+ I+        
Sbjct: 71  SSPPVSFRRLFGLGYIAAARRRPAQLKPTLSLSDLVFVISISFTDK-DQSIIACDGVNKE 130

Query: 130 -----PEPMFTVVKHGGELAVDRNGLFKFDINVS-NSDEVVVIGAGEEVGVVWNVVLEGW 189
                P+   TVVKHG EL V+RNGLFKFDIN++ N    VVIGA EEV VVWN+VLEGW
Sbjct: 131 EKAPRPQSSLTVVKHGEELPVERNGLFKFDINLNENGAAPVVIGAREEVEVVWNIVLEGW 190

Query: 190 RAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGEGGKNDK 249
           R VFTMIECGGRVGMAPRADGWFSEELPAAGCCP  VSGGIV DL+LG+C  G GG ++K
Sbjct: 191 RGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVGDLRLGLC--GNGGGSNK 250

Query: 250 VRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFN 271
           VRIESVSVGMMSV+SWRYVSLDDGLMYLQHFLFN
Sbjct: 251 VRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFN 280

[Close]

BLAST of Cp4.1LG19g00360 vs. ExPASy TrEMBL
Match: A0A0A0LDE5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G497390 PE=4 SV=1)

HSP 1 Score: 395 bits (1014), Expect = 3.39e-136
Identity = 206/275 (74.91%), Postives = 229/275 (83.27%), Query Frame = 0


Query: 10  SPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSLTNLAASSAT 69
           SPPPWEV+LLVAERLDP+TLATASCVCKSWS+SMAS++LWEPIF+A FPSL NLA + AT
Sbjct: 11  SPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPSLFNLATAPAT 70

Query: 70  TSPPVSFRRLFGLGHTAAARRRPAPSKPILCLSDLVFVISVSSTDKADRCIVDV------ 129
            SP VSFRRLFGLG+ AAARRRPA SKP L LSDLVFVIS+S T+K DRC +        
Sbjct: 71  -SPHVSFRRLFGLGYIAAARRRPAQSKPSLSLSDLVFVISISFTNK-DRCSIACDGVNKE 130

Query: 130 -----PEPMFTVVKHGGELAVDRNGLFKFDINVSNSDE--VVVIGAGEEVGVVWNVVLEG 189
                P+   T+VKHG EL VDRNGLFKFDIN++ + +   VVIGA EEV VVWN+VLEG
Sbjct: 131 EKAPRPQSSLTIVKHGEELPVDRNGLFKFDINLNENGDGAPVVIGAREEVEVVWNIVLEG 190

Query: 190 WRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKLGVCKNGEGGKND 249
           WR VFTMIECGGRVGMAPRADGWFSEELPAAGCCP  VSGGIV DL+LG+C  G GG ++
Sbjct: 191 WRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLC--GNGGGSN 250

Query: 250 KVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFN 271
           KVRIESVSVGMMSV+SWRYVSLDDGLMYLQHFLFN
Sbjct: 251 KVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFN 281

[Close]

BLAST of Cp4.1LG19g00360 vs. TAIR 10
Match: AT5G04010.1 (F-box family protein )

HSP 1 Score: 109.4 bits (272), Expect = 4.7e-24
Identity = 81/263 (30.80%), Postives = 127/263 (48.29%), Query Frame = 0


Query: 9   PSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSLTNLAASSA 68
           PSPP WE+L LV   +DP +LA ASCV  +WS   +S +LW+ + + +            
Sbjct: 50  PSPPSWEILCLVGPYMDPESLAVASCVSTTWSKCFSSEDLWKSLPATRHSIFAKAITKEG 109

Query: 69  TTSPPVSFRRLFGLGHTAAARRR-PAPSKPILCLSDLVFVISVSSTDKADRCIVDVPEPM 128
                +S++RL     +AA RRR   P++P + LSDLVF++ VS+  K            
Sbjct: 110 AKPAWLSYKRLISEAESAAKRRRNNQPAEPKISLSDLVFIVHVSAGSKE----------- 169

Query: 129 FTVVKHGGELAVDRNGLFKFDINVSNSDEVVVIGAGEEVGVVWNVVLEGWRAVFTMIECG 188
             VVK G +L    N  F+ + +V +S     +   ++V + WNVVL  +  +F M E  
Sbjct: 170 AVVVKQGKDLVFGSNERFQIEADVRDSGFTADM---KDVSMSWNVVLRNYERMFLMSET- 229

Query: 189 GRVGMAPRADGWFSEELPAAGCCPKEVSG-GIVADLKLGVCKNGEGGKNDKVRIESVSVG 248
             +       GWF++ELP  G   +   G  +V ++K           N+ V ++ V   
Sbjct: 230 -VIKSLDSMIGWFTDELP--GTKNRYCDGSNLVGEVKPSF--------NEDV-LDKVVFA 285

Query: 249 MMSVLSWRYVSLDDGLMYLQHFL 270
           +    +W+ + +DD L YLQ FL
Sbjct: 290 IADSRNWKSLFVDDVLRYLQCFL 285

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g00360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5EAF6	6.6e-23	30.80	Probable F-box protein At5g04010 OS=Arabidopsis thaliana OX=3702 GN=NSFBx PE=2 S...	[more]

BLAST of Cp4.1LG19g00360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023518459.1	1.16e-196	96.83	probable F-box protein At5g04010 [Cucurbita pepo subsp. pepo]	[more]
KAG7027654.1	1.23e-188	96.36	putative F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022925168.1	5.94e-187	94.31	probable F-box protein At5g04010 [Cucurbita moschata]	[more]
XP_022966422.1	4.29e-180	90.75	probable F-box protein At5g04010 [Cucurbita maxima]	[more]
KAG6595690.1	8.81e-151	93.50	putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Cp4.1LG19g00360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EEG3	2.88e-187	94.31	probable F-box protein At5g04010 OS=Cucurbita moschata OX=3662 GN=LOC111432489 P...	[more]
A0A6J1HMX9	2.08e-180	90.75	probable F-box protein At5g04010 OS=Cucurbita maxima OX=3661 GN=LOC111466077 PE=...	[more]
A0A5D3DEJ6	1.62e-136	75.55	Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1...	[more]
A0A1S3BLJ1	1.62e-136	75.55	probable F-box protein At5g04010 OS=Cucumis melo OX=3656 GN=LOC103491161 PE=4 SV...	[more]
A0A0A0LDE5	3.39e-136	74.91	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G497390 PE=4 ...	[more]

BLAST of Cp4.1LG19g00360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04010.1	4.7e-24	30.80	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1280.50		coord: 10..90 e-value: 9.5E-8 score: 33.9
None	No IPR available	PANTHER	PTHR12874:SF16	F-BOX PROTEIN	coord: 6..258
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 13..52 e-value: 1.2E-5 score: 25.0
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 6..258
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 13..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG19g00360.1	Cp4.1LG19g00360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding