Cp4.1LG18g08880 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG18g08880
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Snurportin-1
Location	Cp4.1LG18: 8090850 .. 8094228 (+)
RNA-Seq Expression	Cp4.1LG18g08880
Synteny	Cp4.1LG18g08880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAAGCGCCGCGACGCTCAGCAACAAGCCCGCTCCCTAGCCTCCACGCTCCTCTCCCTCTCATCCACATTTAACGAGCCTATTACCTCTGAGCCGGTGCTGGAAATTGAACTAAACGAACTCGAATCCGAAACAGAATGATTTCCGGAGCTACTACCGCAGGATGAGTTTAACGAGCCTGCTCTGATAGATCTCGATGTGCTCCAGGCTTTGAAGCTCAAAGGTTCAGAGGCTCGTAAGTGGTTATCGAAGCAACTGTTGCTTCCTGAATGGATGATAGATGTTCCTGATCGGCTTAGCGAAGACTGGTTATAATTCCTTCTCATCTCTCTGTTACTAATATTAAGTTATCTATTTACGCTTATGTTTTCTTCAACTACTACTTCGGCTTGGATCTTGTTTCTATTTACTCGATGCCTCATCTGATCATCGCAGCTTTGGTATTGGTTTTATGAGCACTGTTTTTTGCTCATAATTGCATGTTCGCATTCAAATTCAAATCTCTCCGGTTGTTTCATTCTCACTCACTTCCGGTGCTTGGCCAATTGTATACCGAGCTTAATTTTGATTGCTCATTTTTGTTTGTTTGTTGGAGTGTTTGATCCTCCTCACCATAGAGCTTTCTGGTTGCACAAATGTCTGATTCTTACATCAACAAGGATTCAGAAAATGAAAAGGAAAAAGAGAGAAAATCTTAATTTCTCAATGAATTTGATTCGAATGATCGAAGCTGAGGTTGACGTTTCTGTTGTGCTTTGGATGTTTGTAGATGCGCACTTGCAAGGCCTTCCGGTAAACGATGCTTTGTAGTTTCTTCAAACGGAACAACTATCAGCAGGCTACGAAATGGATCACTTCTGCATCGTTTTCCTTCTGCTCTACCTAACGGAGCAAAGACAAAAAAAATGCCTCTGGATCCGGTCAAACATATTCTATTCTATATTGTATATTTCATGAAGTAAGTTTCTCGTAATTCCTATGCCATTTCATAGTCCACGTTTTTTTATTGATTAGTAAAGGTTTGAATGTCCTGTAGATGGACAAACGTACTACGTTATTGATATGATTTGTTGACATGGATATTCTCTTTATGATTACACAGCTGAGTTTCGCTTCTTCTGGCTCAATTCCAAGCTTGTTGAAACTGGTGATTGTGAGCCACCTTCATAGTATCACGAATATAAATTCAGCTCGATACCTGTATATACATGCCATCAAAATAGTCTCTATGTCGCTTATACAGGAGCCATACCTTTTGTCAAGGATGATCTATTATTTTACAAGTAAGATTTATCATCAAGCAATGATTTAATACATTGCGAGTTCTCCTTCTCCTGTTAAATGAGGTTTTAATTTTATTTTCTTTCATGTATAATTTTTCATTTAGTTGATAACTTCTGTTATCTTGTATTGGAATATTTTGAAACCTGTGGAACACTCCTTATGTACATGTAGAATTACATATTTAACAATTTTCAAGTTATAATGTTATGATGCTTATGCTTGATAATTGCTATGCTCTGTTCTTCTTATTAAGTTATTTCTTTCATTTTTGACTCTGTTTCGAAGCTGCGGTTGACATTTCTGTTGTGCTTTGGATGTTTTTAGATGCGTACTTGCAAGGCCTTCCGGTAAACGATGCTTTGTAGTTTCTTCAAACGGAACAACTATCAGCAGGCTACGAAATGGATCAATTCTGCATCGGTTTCCTTCTGCTCTACCTAACCGAGCAAAGACAAAAAAATGCCTCTGGATCCGGTCAAACATATTCTATTCTAAATTGTATATTTCATGAGGTAAGTTTCTCGTAATTCCTATGCCATTCATAGTCCACGTTTTCTTTATTGATTAGTAAAGGTTTGAATGTCCTGTAGATGGACAAATGTACTACGTCATTAATATGATTTGTTGACGTGGATATTCTCTTTATGATTACACAGCTGAGTTTCGCTTCTTCTGGCTCAATTCCAAGCTTGTTGAAACTGGTGCTTGTGAGCCACCTTCATAGTATCACGAATATAAATTCAGCTCGATACCTGTATATACATGCCATCAAAATAGTCTCTATGTGGCTTATACAGGAGCCGTACCTTTGGTCAAGGATGATCTATTATTTTACAAGTAAGATTTATCATCAAGAAATGATTTAATACATTGGGAGTTCTCCTTCTCCTTTTAAATGAGGTTTTAATTTTATTTTCTTTCATGTATAATTTTTCATTTAGTTGATAACTTCTGTTATCTTGTATTGGAATATTTTGAAACCTGTGGACCACTCCTTATGTACATGTAGAATTACATATTTAACAATTTTCAAGTTATAATGTTATGATGCTTATGCTTGATAATTGCTATGCTCTGTTCTTCTTGTTAAGTTATTTCTTTCATTTTATGAATCTGTTTCTATGCTTACAAGGTATAACTTCATCCATCACGTATTGAGAAGTTGTCTTTGTTCTAGGCATTCCCATTACCAGCCAGGTACACCACTTGCATTGGTCTGGAAGGATGAGAATTGCAGTCGATATGTTATTGACACAGATAAAATGGACAAGTTCCAAGCCAACAGCAGGTACTTTATCTCTGCATTTCTTGTTATTAAAAAAAAAAAACTATATGAATGTCTGCAATTATTTTCTTCCTTTCTTTTTCTTTTTTATAAATAATGTTGCCACTATCTTAGTTTCTAGTCAATTGAAGTGGTCAATGATCCATTTTTGTGATACGACATGGATCTGTTCTCTCTCTCTCTCTCTCTCTCATGCAGTTTATAATGCTAATACTGCCTTATTTGAATGATCAGCTGGTTTTGGAGCTACAAGGTGACGGAAAGGGTGCTACATTAGATGATCCTTCTGTGGACATTGGTTGCTTAGATGGTGACTTGATCGAAAAGGTTTTGTTGATCCAAATTTAACCCTTTCTATGGTTCATTAGTGTTAAAATTCTTTTGTTTATTACATGTTGCTTCCTAAGACTACATTTTTGCTTGCAATGAGGTCTGTGGTTATTATGTCTTCTTTCTGTCCTTGTTGGTTTGTTGTGTAATTTGGCATGGTACCTATGTCACCATATCTTAGTTTTAATGTTGTTATTGGGGATTGTGTTAGCTGAAGAAACTGTTGCTTGATATTGGCATCTCTCTCTCTCTCTTTGCATCTCATATTTTGGTCTCCCTTTCTGTTACATACATCCCTTCTCAATTACTTCATTTCTTTTCACTTATTTGGCTCCCCTGCTATGATATCCCTTGGTCACTCTACTCTCTTTTTATCCTTTGGTTTAGATTCTTACGGATGTTTGTAGTGGTTATGGTCCTCAGAGCCAGGCTTATCATTCTATGTTGAAGACATTTTGCGTCCTCTTCTTTGACTAG

mRNA sequence

ATGCAGAAGCGCCGCGACGCTCAGCAACAAGCCCGCTCCCTAGCCTCCACGCTCCTCTCCCTCTCATCCACATTTAACGAGCCTATTACCTCTGAGCCGGATGAGTTTAACGAGCCTGCTCTGATAGATCTCGATGTGCTCCAGGCTTTGAAGCTCAAAGGTTCAGAGGCTCGTAAGTGGTTATCGAAGCAACTGTTGCTTCCTGAATGGATGATAGATGTTCCTGATCGGCTTAGCGAAGACTGATGCGCACTTGCAAGGCCTTCCGCTGAGTTTCGCTTCTTCTGGCTCAATTCCAAGCTTGTTGAAACTGGTGATTCTGCGGTTGACATTTCTGTTGTGCTTTGGATGTTTTTAGATGCGTACTTGCAAGGCCTTCCGCTGGTTTTGGAGCTACAAGGTGACGGAAAGGGTGCTACATTAGATGATCCTTCTGTGGACATTGGTTGCTTAGATGGTGACTTGATCGAAAAGATTCTTACGGATGTTTGTAGTGGTTATGGTCCTCAGAGCCAGGCTTATCATTCTATGTTGAAGACATTTTGCGTCCTCTTCTTTGACTAG

Coding sequence (CDS)

ATGCAGAAGCGCCGCGACGCTCAGCAACAAGCCCGCTCCCTAGCCTCCACGCTCCTCTCCCTCTCATCCACATTTAACGAGCCTATTACCTCTGAGCCGGATGAGTTTAACGAGCCTGCTCTGATAGATCTCGATGTGCTCCAGGCTTTGAAGCTCAAAGGTTCAGAGGCTCGTAAGTGGTTATCGAAGCAACTGTTGCTTCCTGAATGGATGATAGATGTTCCTGATCGGCTTAGCGAAGACTGA

Protein sequence

MQKRRDAQQQARSLASTLLSLSSTFNEPITSEPDEFNEPALIDLDVLQALKLKGSEARKWLSKQLLLPEWMIDVPDRLSED

Homology

[Close]

BLAST of Cp4.1LG18g08880 vs. NCBI nr
Match: KAG7023066.1 (hypothetical protein SDJN02_14090, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124 bits (310), Expect = 2.84e-34
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 3  KRRDAQQQARSLASTLLSLSSTFNEPITSEPDEFNEPALIDLDVLQALKLKGSEARKWLS 62
          KRRDAQQQARSLASTLLSLSSTFNEPITSEPDEFNEPA IDLDVLQALKLKGS+ARKW S
Sbjct: 1  KRRDAQQQARSLASTLLSLSSTFNEPITSEPDEFNEPAPIDLDVLQALKLKGSQARKWFS 60

Query: 63 KQLLLPEWMIDVP 75
          KQLLLPE ++  P
Sbjct: 61 KQLLLPECVLARP 73

[Close]

BLAST of Cp4.1LG18g08880 vs. NCBI nr
Match: KAG7021395.1 (Snurportin-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120 bits (302), Expect = 2.87e-30
Identity = 68/102 (66.67%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 2   QKRRDAQQQARSLASTLLSLSSTFNEPITSEP----------------------DEFNEP 61
           Q RRDAQQQARSLASTLLSLSSTFNEP TSEP                       EFNEP
Sbjct: 31  QNRRDAQQQARSLASTLLSLSSTFNEPSTSEPVLEVELNELDSETECSPVLRSQSEFNEP 90

Query: 62  ALIDLDVLQALKLKGSEARKWLSKQLLLPEWMIDVPDRLSED 81
           +L + DV QA KLKGSEARKW S+QL LPEWMIDVPDRLSED
Sbjct: 91  SLKEFDVRQASKLKGSEARKWFSRQLFLPEWMIDVPDRLSED 132

[Close]

BLAST of Cp4.1LG18g08880 vs. NCBI nr
Match: XP_023001378.1 (snurportin-1 [Cucurbita maxima])

HSP 1 Score: 119 bits (298), Expect = 1.08e-29
Identity = 68/102 (66.67%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 2   QKRRDAQQQARSLASTLLSLSSTFNEPITSEP----------------------DEFNEP 61
           Q RRDAQQQARSLASTLLSLSSTFNEP TSE                        EFNEP
Sbjct: 31  QNRRDAQQQARSLASTLLSLSSTFNEPSTSESVLEVELNELDSETECSPVLRSQSEFNEP 90

Query: 62  ALIDLDVLQALKLKGSEARKWLSKQLLLPEWMIDVPDRLSED 81
           +L + DV QA KLKGSEARKW S+QLLLPEWMIDVPDRLSED
Sbjct: 91  SLKEFDVRQASKLKGSEARKWFSRQLLLPEWMIDVPDRLSED 132

[Close]

BLAST of Cp4.1LG18g08880 vs. NCBI nr
Match: XP_023529237.1 (snurportin-1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119 bits (298), Expect = 1.08e-29
Identity = 68/102 (66.67%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 2   QKRRDAQQQARSLASTLLSLSSTFNEPITSEP----------------------DEFNEP 61
           Q RRDAQQQARSLASTLLSLSSTFNEP TSE                        EFNEP
Sbjct: 31  QNRRDAQQQARSLASTLLSLSSTFNEPSTSESVLEVELNELDSQTECSPVLRSQSEFNEP 90

Query: 62  ALIDLDVLQALKLKGSEARKWLSKQLLLPEWMIDVPDRLSED 81
           +L + DV QA KLKGSEARKW S+QLLLPEWMIDVPDRLSED
Sbjct: 91  SLKEFDVRQASKLKGSEARKWFSRQLLLPEWMIDVPDRLSED 132

[Close]

BLAST of Cp4.1LG18g08880 vs. NCBI nr
Match: XP_022928272.1 (snurportin-1 [Cucurbita moschata])

HSP 1 Score: 119 bits (298), Expect = 1.08e-29
Identity = 68/102 (66.67%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 2   QKRRDAQQQARSLASTLLSLSSTFNEPITSEP----------------------DEFNEP 61
           Q RRDAQQQARSLASTLLSLSSTFNEP TSE                        EFNEP
Sbjct: 31  QNRRDAQQQARSLASTLLSLSSTFNEPSTSESVLEVELNELDSETECSPVLRSQSEFNEP 90

Query: 62  ALIDLDVLQALKLKGSEARKWLSKQLLLPEWMIDVPDRLSED 81
           +L + DV QA KLKGSEARKW S+QLLLPEWMIDVPDRLSED
Sbjct: 91  SLKEFDVRQASKLKGSEARKWFSRQLLLPEWMIDVPDRLSED 132

[Close]

BLAST of Cp4.1LG18g08880 vs. ExPASy TrEMBL
Match: A0A6J1KQC3 (Snurportin-1 OS=Cucurbita maxima OX=3661 GN=LOC111495530 PE=3 SV=1)

HSP 1 Score: 119 bits (298), Expect = 5.24e-30
Identity = 68/102 (66.67%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 2   QKRRDAQQQARSLASTLLSLSSTFNEPITSEP----------------------DEFNEP 61
           Q RRDAQQQARSLASTLLSLSSTFNEP TSE                        EFNEP
Sbjct: 31  QNRRDAQQQARSLASTLLSLSSTFNEPSTSESVLEVELNELDSETECSPVLRSQSEFNEP 90

Query: 62  ALIDLDVLQALKLKGSEARKWLSKQLLLPEWMIDVPDRLSED 81
           +L + DV QA KLKGSEARKW S+QLLLPEWMIDVPDRLSED
Sbjct: 91  SLKEFDVRQASKLKGSEARKWFSRQLLLPEWMIDVPDRLSED 132

[Close]

BLAST of Cp4.1LG18g08880 vs. ExPASy TrEMBL
Match: A0A6J1EJF9 (Snurportin-1 OS=Cucurbita moschata OX=3662 GN=LOC111435150 PE=3 SV=1)

HSP 1 Score: 119 bits (298), Expect = 5.24e-30
Identity = 68/102 (66.67%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 2   QKRRDAQQQARSLASTLLSLSSTFNEPITSEP----------------------DEFNEP 61
           Q RRDAQQQARSLASTLLSLSSTFNEP TSE                        EFNEP
Sbjct: 31  QNRRDAQQQARSLASTLLSLSSTFNEPSTSESVLEVELNELDSETECSPVLRSQSEFNEP 90

Query: 62  ALIDLDVLQALKLKGSEARKWLSKQLLLPEWMIDVPDRLSED 81
           +L + DV QA KLKGSEARKW S+QLLLPEWMIDVPDRLSED
Sbjct: 91  SLKEFDVRQASKLKGSEARKWFSRQLLLPEWMIDVPDRLSED 132

[Close]

BLAST of Cp4.1LG18g08880 vs. ExPASy TrEMBL
Match: A0A1S4E4Q9 (Snurportin-1 OS=Cucumis melo OX=3656 GN=LOC103502323 PE=3 SV=1)

HSP 1 Score: 118 bits (295), Expect = 1.40e-29
Identity = 67/102 (65.69%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 2   QKRRDAQQQARSLASTLLSLSSTFNEPITSEP----------------------DEFNEP 61
           Q RRDAQQQARSLASTLLSLSS+FNEP TSEP                       EFNEP
Sbjct: 31  QNRRDAQQQARSLASTLLSLSSSFNEPSTSEPVLEIELNELESETECSTEILAEREFNEP 90

Query: 62  ALIDLDVLQALKLKGSEARKWLSKQLLLPEWMIDVPDRLSED 81
           AL +LDV QA KLK S+ARKW SKQLLLPEWMIDVPDRL++D
Sbjct: 91  ALKELDVRQASKLKSSDARKWFSKQLLLPEWMIDVPDRLTDD 132

[Close]

BLAST of Cp4.1LG18g08880 vs. ExPASy TrEMBL
Match: A0A0A0LNL4 (Snurportin-1 OS=Cucumis sativus OX=3659 GN=Csa_1G002050 PE=3 SV=1)

HSP 1 Score: 117 bits (292), Expect = 5.50e-29
Identity = 67/102 (65.69%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 2   QKRRDAQQQARSLASTLLSLSSTFNEPITSEP----------------------DEFNEP 61
           Q RRDAQQQARSLASTLLSLSS+F+EP TSEP                       EFNEP
Sbjct: 67  QNRRDAQQQARSLASTLLSLSSSFDEPSTSEPVLEIELNELESGTECSLEILSEREFNEP 126

Query: 62  ALIDLDVLQALKLKGSEARKWLSKQLLLPEWMIDVPDRLSED 81
           AL +LDV QA KLK SEARKW SKQLLLPEWMIDVPDRLS++
Sbjct: 127 ALKELDVRQASKLKSSEARKWFSKQLLLPEWMIDVPDRLSDE 168

[Close]

BLAST of Cp4.1LG18g08880 vs. ExPASy TrEMBL
Match: A0A5A7URL4 (Snurportin-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00570 PE=4 SV=1)

HSP 1 Score: 118 bits (295), Expect = 6.00e-29
Identity = 67/102 (65.69%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 2   QKRRDAQQQARSLASTLLSLSSTFNEPITSEP----------------------DEFNEP 61
           Q RRDAQQQARSLASTLLSLSS+FNEP TSEP                       EFNEP
Sbjct: 501 QNRRDAQQQARSLASTLLSLSSSFNEPSTSEPVLEIELNELESETECSTEILAEREFNEP 560

Query: 62  ALIDLDVLQALKLKGSEARKWLSKQLLLPEWMIDVPDRLSED 81
           AL +LDV QA KLK S+ARKW SKQLLLPEWMIDVPDRL++D
Sbjct: 561 ALKELDVRQASKLKSSDARKWFSKQLLLPEWMIDVPDRLTDD 602

[Close]

BLAST of Cp4.1LG18g08880 vs. TAIR 10
Match: AT4G24880.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 79.3 bits (194), Expect = 1.5e-15
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 2   QKRRDAQQQARSLASTLLSLSSTFNEPITSEPDEFNE--PALI-------DLDVLQALKL 61
           Q R DAQQ+AR+LAS+L+SL S+  +    +P+  +E  P L+         DV QA +L
Sbjct: 31  QHRSDAQQRARNLASSLISLQSSSPD---VDPEILSEAVPELVGTESESSSFDVRQASRL 90

Query: 62  KGSEARKWLSKQLLLPEWMIDVPDRLSED 82
           +G EARKW +KQL+LPEWMIDVPD LS+D
Sbjct: 91  RGPEARKWFAKQLMLPEWMIDVPDNLSQD 116

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g08880 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG18g08880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023066.1	2.84e-34	89.04	hypothetical protein SDJN02_14090, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7021395.1	2.87e-30	66.67	Snurportin-1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023001378.1	1.08e-29	66.67	snurportin-1 [Cucurbita maxima]	[more]
XP_023529237.1	1.08e-29	66.67	snurportin-1 [Cucurbita pepo subsp. pepo]	[more]
XP_022928272.1	1.08e-29	66.67	snurportin-1 [Cucurbita moschata]	[more]

BLAST of Cp4.1LG18g08880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KQC3	5.24e-30	66.67	Snurportin-1 OS=Cucurbita maxima OX=3661 GN=LOC111495530 PE=3 SV=1	[more]
A0A6J1EJF9	5.24e-30	66.67	Snurportin-1 OS=Cucurbita moschata OX=3662 GN=LOC111435150 PE=3 SV=1	[more]
A0A1S4E4Q9	1.40e-29	65.69	Snurportin-1 OS=Cucumis melo OX=3656 GN=LOC103502323 PE=3 SV=1	[more]
A0A0A0LNL4	5.50e-29	65.69	Snurportin-1 OS=Cucumis sativus OX=3659 GN=Csa_1G002050 PE=3 SV=1	[more]
A0A5A7URL4	6.00e-29	65.69	Snurportin-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00570 P...	[more]

BLAST of Cp4.1LG18g08880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24880.1	1.5e-15	51.69	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.470.30	DNA ligase/mRNA capping enzyme	coord: 1..81 e-value: 4.7E-7 score: 30.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g08880.1	Cp4.1LG18g08880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005622	intracellular anatomical structure