Cp4.1LG18g08100 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG18g08100
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG18: 7540062 .. 7542508 (+)
RNA-Seq Expression	Cp4.1LG18g08100
Synteny	Cp4.1LG18g08100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGAAGGTTCAGCCACCTGCCTCTCACTTCGCTCCTCAGCTCTAATCCATGGTTAACCATTCAAGTTTCAGGTTCCTCTCTCTCTCTCTCTTAGCGCTCTCTTCTTCTGCAGAACGAGCTTATTTGCTTTCTATTTTTGGTTCGTTAATGGCTGCTCAGTACTCTTTTAGGTCGTCTTTGGTCCCATTTTTGGAATTGATTAGATTGGTTTGATTATGCTTTTTTTATTTGTGGTGGAAAGTGTTGGTTCATGTTTCAGTTTGTTCGTATCATCCATCGATGAAATTGAATTACGTCAGTTGAATTTTTATATTCCTAGGCTGAATTTTTATCGTCAATTAGTGGTTTTCTGAAGAACTCGTGACAGATCGTCAAGTAGTGATTATGTTGCGAGCAAAGCAGATTGACAGTGTTTCAAACTGGGACAGATCATTTTTTTTTTGTGGTGTTACACAAAATGGGGTGATCTGTTGAACTCGCTCGATCAATTCAATTTAATCCATATGGTTAGGTTTGAGTTATCAATTAACTTAGGTTGGGATAGGTTCAAATAAAAAACTCAATGTAGGGTACTATAGTTGGGTTGAGCCGAACTAATTCAAATTTATTTAATTTCATAATTATTTTTTTCTCTATTTGGAAGGTAGTTTTTCAAAATATATATTGAAATGAAGTGTAAGTCTTGACTCAATATTTGGAAATAAACAATGACCCTAACAACTCGAACTAATCCAATCTAAATGTTTTCTAGTTAATTTAGGTATGATTTATTATTTAATAAGGTTGCTTAGGTTGAAAATTTTGTTTGGAAATAAATAATGAACTTAACAACCTGCACCAATCAAATCCAAATATTTTATAGTTAAGTATGATTCATTATTTAATAAGGGTTACTTACGTTCAAAAAGATTTACGACCTGTACAATTGGGTTGGGTCTAAAAAATGTTTCAACCTGACCAAACTCAACCCGTGAGCATCCTTTATTTTTAGACGAAACTTGTGTTTCCCAGGGACAAAATGGTAGTAGTGAAATCCTGCCCTCACAAAAGGATGCACCTTGATAGCCAATAGTTCAGGAAGCTTTAATTGCAGAAAATGCAACAAAAGTAATTATGTCTCATGAAACTGACGACGTTGATCTCTCAGTTTCCATACAACAAGTTACAAACACCGGCCCCAATCTCCAGAGGGGAACAAAATGTGTAAGGTATGCCAGTAGCCTTAGCTCTGTTTTGGATGATGAGTGCATTTCACCAAATATTGACACTCAGATTGTTAAGATGGGTACTATGGTTGTGAGCTTCTTCTCTGACTTTGTGAATTCTAAAGTCCCCTTATCTGACTATGATTGAACATTTAGCTCATTTAAAATTTGCATGGTTGATCTTGCCCGGTCCATTTCTTCTGTGAAACCTTAAAAAATCAAACATCTAAGAAGAGAGAACATTCCTATAGATTTTAAGCCTCAAAGTAGTAGTAACCATCATGGTCCAAATTGCAAGGCTGAGCAATTCAATAATTATGTTAAAGGCTCAAAGCAAGTTCCAGAGGCTAGGATGCGAAAGTCAGTGGTATTTCATAATATCTCCTCAGAAAATTGTGATAAATTAAAGGACTATACCTAAGAGAACAAGAGTTTATTCAAACAGCTTTGGCCATAGGTTCCATAGTTCACAAAGTCTTCCAAGAATTTGAAAAAACTTGCAGATAATTTTAAAAGCTCAATAAGATGAAACCAATCGCTCCACTGTTTTTTAATGCCCCATATGTTATGGAAAGTGTTTTTTGCGTATTGCAACAACTTGGCCCTGTTTCTGAAGAGGCTCTTGGAAAATTGAACGATTCAATAGATGCATACCAGGCCAACCAAATTCTGAAGTGGGTAGATTACCACTCTGTTGCTCTTGTTTTTTTTTTTTTTTTTTAAATTGATTAAAGCGCATGGCTAGGTTTAGACATGATGGACACACTTGTACTAGTATGATTGGCCTCCTTAATCGTGCCAAACAGTTTGGTGCAATAAATAGACTGCTTTATCAAATGATCAAGGATGGGTGTCAGCCCAATGTTGTAACATGTAATTGTATAATTCATTGTTATGATTGTGCAAACTACTTGCAAGAAGCTGTTGATGTATTCAAACAAATGCAGGAAGCAGGGAGTGAACCTGATGGAGTCACCTACTGCACGCTCATTGACATTCATGCTAAATCTAGCATTCTTGATATTCCATGGGAATGTATGAGAGGATGCATGAGGCTGGCCTCACTCCGGATACATTTACTTACAGTGTTATGATCAACTGCTTGGGGAAGCTGGCCATTAGAAGTTGCATATAGGCTATACTATAGGATGGTTGATCAGGGTTGTGTTCCAAATTTGGTAACCTACAATATCATGATTGCTCTTCAAGCAAAAGCAAGGAATTACTATATCCAATAG

mRNA sequence

ATGGGGAGTGAACCTGATGGAGTCACCTACTGCACGCTCATTGACATTCATGCTAAATCTAGCATTCTTGATATTCCATGGGAATGTATGAGAGGATGCATGAGGCTGGCCTCACTCCGGATACATTTACTTACAGTCTGGCCATTAGAAGTTGCATATAGGCTATACTATAGGATGGTTGATCAGGGTTGTGTTCCAAATTTGGTAACCTACAATATCATGATTGCTCTTCAAGCAAAAGCAAGGAATTACTATATCCAATAG

Coding sequence (CDS)

ATGGGGAGTGAACCTGATGGAGTCACCTACTGCACGCTCATTGACATTCATGCTAAATCTAGCATTCTTGATATTCCATGGGAATGTATGAGAGGATGCATGAGGCTGGCCTCACTCCGGATACATTTACTTACAGTCTGGCCATTAGAAGTTGCATATAGGCTATACTATAGGATGGTTGATCAGGGTTGTGTTCCAAATTTGGTAACCTACAATATCATGATTGCTCTTCAAGCAAAAGCAAGGAATTACTATATCCAATAG

Protein sequence

MGSEPDGVTYCTLIDIHAKSSILDIPWECMRGCMRLASLRIHLLTVWPLEVAYRLYYRMVDQGCVPNLVTYNIMIALQAKARNYYIQ

Homology

[Close]

BLAST of Cp4.1LG18g08100 vs. ExPASy Swiss-Prot
Match: Q9SSF9 (Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana OX=3702 GN=At1g74750 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.2e-16
Identity = 50/93 (53.76%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 2   GSEPDGVTYCTLIDIHAKSSILDIPWECMRGCMRLASLRIHLLT----------VWPLEV 61
           G EPD VTYCTLIDIHAK+  LDI  + M   M+ A L     T             L  
Sbjct: 424 GCEPDRVTYCTLIDIHAKAGFLDIAMD-MYQRMQEAGLSPDTFTYSVIINCLGKAGHLPA 483

Query: 62  AYRLYYRMVDQGCVPNLVTYNIMIALQAKARNY 85
           A+RL+  MV QGC PNLVT+NIMIAL AKARNY
Sbjct: 484 AHRLFCEMVGQGCTPNLVTFNIMIALHAKARNY 515

[Close]

BLAST of Cp4.1LG18g08100 vs. ExPASy Swiss-Prot
Match: Q8GYP6 (Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana OX=3702 GN=At1g18900 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.1e-15
Identity = 47/93 (50.54%), Postives = 55/93 (59.14%), Query Frame = 0


Query: 2   GSEPDGVTYCTLIDIHAKSSILDIPWECMRGCMRLASLRIHLLT----------VWPLEV 61
           G +PD VTYCTLIDIHAK+  LDI  + M   M+   L     T             L  
Sbjct: 429 GCKPDRVTYCTLIDIHAKAGFLDIAMD-MYQRMQAGGLSPDTFTYSVIINCLGKAGHLPA 488

Query: 62  AYRLYYRMVDQGCVPNLVTYNIMIALQAKARNY 85
           A++L+  MVDQGC PNLVTYNIM+ L AKARNY
Sbjct: 489 AHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNY 520

[Close]

BLAST of Cp4.1LG18g08100 vs. NCBI nr
Match: XP_022921918.1 (pentatricopeptide repeat-containing protein At1g74750-like [Cucurbita moschata])

HSP 1 Score: 95.5 bits (236), Expect = 1.85e-23
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2  GSEPDGVTYCTLIDIHAKSSILDIPWECMRGCMRLASLRIHLLTV 46
          GSEPDGVTYCTLIDIH+KSSILDIPWECMRGC RLASLRIHLLTV
Sbjct: 31 GSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTV 75

[Close]

BLAST of Cp4.1LG18g08100 vs. NCBI nr
Match: KAG7023176.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.5 bits (236), Expect = 4.64e-23
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2   GSEPDGVTYCTLIDIHAKSSILDIPWECMRGCMRLASLRIHLLTV 46
           GSEPDGVTYCTLIDIH+KSSILDIPWECMRGC RLASLRIHLLTV
Sbjct: 64  GSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTV 108

[Close]

BLAST of Cp4.1LG18g08100 vs. NCBI nr
Match: KAF9623851.1 (hypothetical protein IFM89_005436 [Coptis chinensis])

HSP 1 Score: 96.7 bits (239), Expect = 5.82e-21
Identity = 53/93 (56.99%), Postives = 61/93 (65.59%), Query Frame = 0


Query: 2   GSEPDGVTYCTLIDIHAKSSILDIPWECMRGCMRLASLRIHLLT----------VWPLEV 61
           G EPD VTYCTLIDIHAKS  LD+  + M G M+ A L     T             L+ 
Sbjct: 444 GCEPDRVTYCTLIDIHAKSGFLDVALD-MYGRMQEAGLTPDTFTYSVIINCLGKAGHLDA 503

Query: 62  AYRLYYRMVDQGCVPNLVTYNIMIALQAKARNY 84
           +Y+L+  M+DQGCVPNLVTYNIMIALQAKARNY
Sbjct: 504 SYKLFSEMIDQGCVPNLVTYNIMIALQAKARNY 535

[Close]

BLAST of Cp4.1LG18g08100 vs. NCBI nr
Match: XP_022135050.1 (pentatricopeptide repeat-containing protein At1g18900 [Momordica charantia])

HSP 1 Score: 95.1 bits (235), Expect = 2.02e-20
Identity = 57/95 (60.00%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 2   GSEPDGVTYCTLIDIHAKSSILDIPWECMRGCMRLASLRIHLLT----------VWPLEV 61
           G EPD VTYCTLIDIHAKS  LDI    M   M+ A L     T             L  
Sbjct: 447 GCEPDRVTYCTLIDIHAKSGFLDIAMG-MYERMQEAGLTPDTFTYSVMINCLGKAGHLNA 506

Query: 62  AYRLYYRMVDQGCVPNLVTYNIMIALQAKARNYYI 86
           A+RL+ RMVDQGCVPNLVTYNIMIALQAKARNY I
Sbjct: 507 AHRLFCRMVDQGCVPNLVTYNIMIALQAKARNYEI 540

[Close]

BLAST of Cp4.1LG18g08100 vs. NCBI nr
Match: XP_038878936.1 (pentatricopeptide repeat-containing protein At1g18900-like [Benincasa hispida])

HSP 1 Score: 94.7 bits (234), Expect = 2.76e-20
Identity = 56/95 (58.95%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 2   GSEPDGVTYCTLIDIHAKSSILDIPWECMRGCMRLASLRIHLLT----------VWPLEV 61
           G EPD VTYCTLIDIHAKS  LD+    M   M+ A L     T             L  
Sbjct: 444 GCEPDRVTYCTLIDIHAKSGFLDVAMG-MYEKMQEAGLTPDTFTYSVMINCLGKAGHLNA 503

Query: 62  AYRLYYRMVDQGCVPNLVTYNIMIALQAKARNYYI 86
           A+RL+ RMVDQGCVPNLVTYNIMIALQAKARNY I
Sbjct: 504 AHRLFCRMVDQGCVPNLVTYNIMIALQAKARNYEI 537

[Close]

BLAST of Cp4.1LG18g08100 vs. ExPASy TrEMBL
Match: A0A6J1E552 (pentatricopeptide repeat-containing protein At1g74750-like OS=Cucurbita moschata OX=3662 GN=LOC111430033 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.95e-24
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2  GSEPDGVTYCTLIDIHAKSSILDIPWECMRGCMRLASLRIHLLTV 46
          GSEPDGVTYCTLIDIH+KSSILDIPWECMRGC RLASLRIHLLTV
Sbjct: 31 GSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTV 75

[Close]

BLAST of Cp4.1LG18g08100 vs. ExPASy TrEMBL
Match: A0A6J1C013 (pentatricopeptide repeat-containing protein At1g18900 OS=Momordica charantia OX=3673 GN=LOC111007135 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 9.79e-21
Identity = 57/95 (60.00%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 2   GSEPDGVTYCTLIDIHAKSSILDIPWECMRGCMRLASLRIHLLT----------VWPLEV 61
           G EPD VTYCTLIDIHAKS  LDI    M   M+ A L     T             L  
Sbjct: 447 GCEPDRVTYCTLIDIHAKSGFLDIAMG-MYERMQEAGLTPDTFTYSVMINCLGKAGHLNA 506

Query: 62  AYRLYYRMVDQGCVPNLVTYNIMIALQAKARNYYI 86
           A+RL+ RMVDQGCVPNLVTYNIMIALQAKARNY I
Sbjct: 507 AHRLFCRMVDQGCVPNLVTYNIMIALQAKARNYEI 540

[Close]

BLAST of Cp4.1LG18g08100 vs. ExPASy TrEMBL
Match: A0A5D3BK75 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G002310 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.82e-20
Identity = 56/95 (58.95%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 2   GSEPDGVTYCTLIDIHAKSSILDIPWECMRGCMRLASLRIHLLT----------VWPLEV 61
           G EPD VTYCTLIDIHAKS  LD+    M   M+ A L     T             L  
Sbjct: 444 GCEPDRVTYCTLIDIHAKSGFLDVAMG-MYEKMQDAGLTPDTFTYSVMINCLGKAGHLNA 503

Query: 62  AYRLYYRMVDQGCVPNLVTYNIMIALQAKARNYYI 86
           A+RL+ RMVDQGCVPNLVTYNIMIALQAKARNY I
Sbjct: 504 AHRLFCRMVDQGCVPNLVTYNIMIALQAKARNYEI 537

[Close]

BLAST of Cp4.1LG18g08100 vs. ExPASy TrEMBL
Match: A0A1S3BVJ8 (pentatricopeptide repeat-containing protein At1g18900 OS=Cucumis melo OX=3656 GN=LOC103493965 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.82e-20
Identity = 56/95 (58.95%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 2   GSEPDGVTYCTLIDIHAKSSILDIPWECMRGCMRLASLRIHLLT----------VWPLEV 61
           G EPD VTYCTLIDIHAKS  LD+    M   M+ A L     T             L  
Sbjct: 444 GCEPDRVTYCTLIDIHAKSGFLDVAMG-MYEKMQDAGLTPDTFTYSVMINCLGKAGHLNA 503

Query: 62  AYRLYYRMVDQGCVPNLVTYNIMIALQAKARNYYI 86
           A+RL+ RMVDQGCVPNLVTYNIMIALQAKARNY I
Sbjct: 504 AHRLFCRMVDQGCVPNLVTYNIMIALQAKARNYEI 537

[Close]

BLAST of Cp4.1LG18g08100 vs. ExPASy TrEMBL
Match: A0A0A0LRL7 (Smr domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G008500 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.64e-20
Identity = 55/95 (57.89%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 2   GSEPDGVTYCTLIDIHAKSSILDIPWECMRGCMRLASLRIHLLT----------VWPLEV 61
           G EPD VTYCTLIDIHAKS  LD+    M   M+ A L     T             L  
Sbjct: 444 GCEPDRVTYCTLIDIHAKSGFLDVAMG-MYEKMQDAGLTPDTFTYSVMINCLGKAGHLNA 503

Query: 62  AYRLYYRMVDQGCVPNLVTYNIMIALQAKARNYYI 86
           A+RL+ RMVD+GCVPNLVTYNIMIALQAKARNY I
Sbjct: 504 AHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEI 537

[Close]

BLAST of Cp4.1LG18g08100 vs. TAIR 10
Match: AT1G74750.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 2.3e-17
Identity = 50/93 (53.76%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 2   GSEPDGVTYCTLIDIHAKSSILDIPWECMRGCMRLASLRIHLLT----------VWPLEV 61
           G EPD VTYCTLIDIHAK+  LDI  + M   M+ A L     T             L  
Sbjct: 424 GCEPDRVTYCTLIDIHAKAGFLDIAMD-MYQRMQEAGLSPDTFTYSVIINCLGKAGHLPA 483

Query: 62  AYRLYYRMVDQGCVPNLVTYNIMIALQAKARNY 85
           A+RL+  MV QGC PNLVT+NIMIAL AKARNY
Sbjct: 484 AHRLFCEMVGQGCTPNLVTFNIMIALHAKARNY 515

[Close]

BLAST of Cp4.1LG18g08100 vs. TAIR 10
Match: AT1G18900.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-16
Identity = 47/93 (50.54%), Postives = 55/93 (59.14%), Query Frame = 0


Query: 2   GSEPDGVTYCTLIDIHAKSSILDIPWECMRGCMRLASLRIHLLT----------VWPLEV 61
           G +PD VTYCTLIDIHAK+  LDI  + M   M+   L     T             L  
Sbjct: 429 GCKPDRVTYCTLIDIHAKAGFLDIAMD-MYQRMQAGGLSPDTFTYSVIINCLGKAGHLPA 488

Query: 62  AYRLYYRMVDQGCVPNLVTYNIMIALQAKARNY 85
           A++L+  MVDQGC PNLVTYNIM+ L AKARNY
Sbjct: 489 AHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNY 520

[Close]

BLAST of Cp4.1LG18g08100 vs. TAIR 10
Match: AT1G18900.2 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-16
Identity = 47/93 (50.54%), Postives = 55/93 (59.14%), Query Frame = 0


Query: 2   GSEPDGVTYCTLIDIHAKSSILDIPWECMRGCMRLASLRIHLLT----------VWPLEV 61
           G +PD VTYCTLIDIHAK+  LDI  + M   M+   L     T             L  
Sbjct: 429 GCKPDRVTYCTLIDIHAKAGFLDIAMD-MYQRMQAGGLSPDTFTYSVIINCLGKAGHLPA 488

Query: 62  AYRLYYRMVDQGCVPNLVTYNIMIALQAKARNY 85
           A++L+  MVDQGC PNLVTYNIM+ L AKARNY
Sbjct: 489 AHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNY 520

[Close]

BLAST of Cp4.1LG18g08100 vs. TAIR 10
Match: AT1G18900.3 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-16
Identity = 47/93 (50.54%), Postives = 55/93 (59.14%), Query Frame = 0


Query: 2   GSEPDGVTYCTLIDIHAKSSILDIPWECMRGCMRLASLRIHLLT----------VWPLEV 61
           G +PD VTYCTLIDIHAK+  LDI  + M   M+   L     T             L  
Sbjct: 429 GCKPDRVTYCTLIDIHAKAGFLDIAMD-MYQRMQAGGLSPDTFTYSVIINCLGKAGHLPA 488

Query: 62  AYRLYYRMVDQGCVPNLVTYNIMIALQAKARNY 85
           A++L+  MVDQGC PNLVTYNIM+ L AKARNY
Sbjct: 489 AHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNY 520

[Close]

BLAST of Cp4.1LG18g08100 vs. TAIR 10
Match: AT1G20300.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.0e-04
Identity = 24/86 (27.91%), Postives = 43/86 (50.00%), Query Frame = 0


Query: 1   MGSEPDGVTYCTLIDIHAKSSILD---------IPWECMRGCMRLASLRIHLLTVWPLEV 60
           +G EPD +TY  LI+ H +   L+         I  +C        ++  ++     +  
Sbjct: 354 LGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNG 413

Query: 61  AYRLYYRMVDQGCVPNLVTYNIMIAL 78
           A+R+Y +M++  C PN VTYNI++ +
Sbjct: 414 AHRMYSKMMEAKCEPNTVTYNILMRM 439

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g08100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SSF9	3.2e-16	53.76	Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana OX...	[more]
Q8GYP6	2.1e-15	50.54	Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana OX...	[more]

BLAST of Cp4.1LG18g08100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921918.1	1.85e-23	95.56	pentatricopeptide repeat-containing protein At1g74750-like [Cucurbita moschata]	[more]
KAG7023176.1	4.64e-23	95.56	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
KAF9623851.1	5.82e-21	56.99	hypothetical protein IFM89_005436 [Coptis chinensis]	[more]
XP_022135050.1	2.02e-20	60.00	pentatricopeptide repeat-containing protein At1g18900 [Momordica charantia]	[more]
XP_038878936.1	2.76e-20	58.95	pentatricopeptide repeat-containing protein At1g18900-like [Benincasa hispida]	[more]

BLAST of Cp4.1LG18g08100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E552	8.95e-24	95.56	pentatricopeptide repeat-containing protein At1g74750-like OS=Cucurbita moschata...	[more]
A0A6J1C013	9.79e-21	60.00	pentatricopeptide repeat-containing protein At1g18900 OS=Momordica charantia OX=...	[more]
A0A5D3BK75	1.82e-20	58.95	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BVJ8	1.82e-20	58.95	pentatricopeptide repeat-containing protein At1g18900 OS=Cucumis melo OX=3656 GN...	[more]
A0A0A0LRL7	4.64e-20	57.89	Smr domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G008500 PE=3 SV...	[more]

BLAST of Cp4.1LG18g08100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74750.1	2.3e-17	53.76	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G18900.1	1.5e-16	50.54	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G18900.2	1.5e-16	50.54	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G18900.3	1.5e-16	50.54	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G20300.1	1.0e-04	27.91	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..85 e-value: 2.7E-10 score: 41.9
None	No IPR available	PANTHER	PTHR47942:SF59	OS12G0638900 PROTEIN	coord: 1..26
None	No IPR available	PANTHER	PTHR47942	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 49..85 coord: 1..26
None	No IPR available	PANTHER	PTHR47942:SF59	OS12G0638900 PROTEIN	coord: 49..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g08100.1	Cp4.1LG18g08100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding