Cp4.1LG18g04320 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG18g04320
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	serine-rich protein-related
Location	Cp4.1LG18: 5452432 .. 5452692 (+)
RNA-Seq Expression	Cp4.1LG18g04320
Synteny	Cp4.1LG18g04320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGCCCACGGAAAAATCAGGATCAGTATCCCTTCCTCCGCCAAAAGCGTTGGCGACGGTGACGGCGTGGCGGCTCACACATGTTCATCCAAAGGCCAATGCCTCTGCTCGCCCACCACTCATCCTGGATCCTTCCGTTGTCGTCTCCACCGTTCCAATTCGTTGCCCTGGACCAGGCACTCCAAGACCACTGCGTCGTCTTCGGCCGACGCCTCTCACACCTCAGATCTTTCTCCCAAGTCAGTTGAATCTACTTGA

mRNA sequence

ATGTCAGCCCACGGAAAAATCAGGATCAGTATCCCTTCCTCCGCCAAAAGCGTTGGCGACGGTGACGGCGTGGCGGCTCACACATGTTCATCCAAAGGCCAATGCCTCTGCTCGCCCACCACTCATCCTGGATCCTTCCGTTGTCGTCTCCACCGTTCCAATTCGTTGCCCTGGACCAGGCACTCCAAGACCACTGCGTCGTCTTCGGCCGACGCCTCTCACACCTCAGATCTTTCTCCCAAGTCAGTTGAATCTACTTGA

Coding sequence (CDS)

ATGTCAGCCCACGGAAAAATCAGGATCAGTATCCCTTCCTCCGCCAAAAGCGTTGGCGACGGTGACGGCGTGGCGGCTCACACATGTTCATCCAAAGGCCAATGCCTCTGCTCGCCCACCACTCATCCTGGATCCTTCCGTTGTCGTCTCCACCGTTCCAATTCGTTGCCCTGGACCAGGCACTCCAAGACCACTGCGTCGTCTTCGGCCGACGCCTCTCACACCTCAGATCTTTCTCCCAAGTCAGTTGAATCTACTTGA

Protein sequence

MSAHGKIRISIPSSAKSVGDGDGVAAHTCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWTRHSKTTASSSADASHTSDLSPKSVEST

Homology

[Close]

BLAST of Cp4.1LG18g04320 vs. NCBI nr
Match: KAG6589904.1 (hypothetical protein SDJN03_15327, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023574.1 hypothetical protein SDJN02_14600, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169 bits (429), Expect = 5.91e-53
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MSAHGKIRISIPSSAKSVGDGDGVAAHTCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWTR 60
          MSAHGKIRISIPSSAKSVGDGDGVAAHTCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWTR
Sbjct: 1  MSAHGKIRISIPSSAKSVGDGDGVAAHTCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWTR 60

Query: 61 HSKTTASSSADASHTSDLSPKSVEST 86
          HSKTTASSSADASHTSDLSPKSVEST
Sbjct: 61 HSKTTASSSADASHTSDLSPKSVEST 86

[Close]

BLAST of Cp4.1LG18g04320 vs. NCBI nr
Match: KAA0046595.1 (hypothetical protein E6C27_scaffold114G001360 [Cucumis melo var. makuwa] >TYK00101.1 hypothetical protein E5676_scaffold596G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 132 bits (331), Expect = 5.13e-38
Identity = 68/85 (80.00%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 1  MSAHGKIRISIPSSAKSVGDGDGVAAHTCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWTR 60
          M +  K+ ISIPS+AKS GDGDGVA H+CSSK QCLCSPTTHPGSFRCRLHRSNSLPW+R
Sbjct: 1  MGSQPKMSISIPSTAKSAGDGDGVAGHSCSSKAQCLCSPTTHPGSFRCRLHRSNSLPWSR 60

Query: 61 HSKTTASSSADASHTSDLSPKSVES 85
           SK+TA+S ADAS+TSDLSPKSVES
Sbjct: 61 QSKSTAAS-ADASNTSDLSPKSVES 84

[Close]

BLAST of Cp4.1LG18g04320 vs. NCBI nr
Match: KAE8653119.1 (hypothetical protein Csa_020123 [Cucumis sativus])

HSP 1 Score: 123 bits (308), Expect = 4.93e-34
Identity = 65/82 (79.27%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 6   KIRISIPSSAKSVGDGDGVA--AHTCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWTRHSK 65
           K+ I IPS+AKS G+GDGV   +H+CSSKGQCLCSPTTHPGSFRCRLHRSNSLPW+R SK
Sbjct: 41  KMSIRIPSTAKSAGEGDGVLGHSHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSK 100

Query: 66  TTASSSADASHTSDLSPKSVES 85
           +TA+S ADAS+TSDLSPKSVES
Sbjct: 101 STAAS-ADASNTSDLSPKSVES 121

[Close]

BLAST of Cp4.1LG18g04320 vs. NCBI nr
Match: OUZ99929.1 (hypothetical protein BVC80_9069g38 [Macleaya cordata])

HSP 1 Score: 76.3 bits (186), Expect = 6.25e-16
Identity = 46/87 (52.87%), Postives = 58/87 (66.67%), Query Frame = 0


Query: 1  MSAHGKIRISIPSSAKSVGDGDGVA-AHTCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWT 60
          M++HG I +S+  S K  G+G  VA A T S KGQCLCSPTTH GSFRCR HRS S  W 
Sbjct: 1  MTSHGTINVSL--SPKGNGNGQPVATASTNSPKGQCLCSPTTHNGSFRCRFHRSLSSTWR 60

Query: 61 RHSKTTASSSADASHTSDLSPKSVEST 86
               +  +++ A+ T+ +SPKSVEST
Sbjct: 61 MKRSKSMPANSTAAATTSISPKSVEST 85

[Close]

BLAST of Cp4.1LG18g04320 vs. NCBI nr
Match: KAF3961111.1 (hypothetical protein CMV_014232 [Castanea mollissima])

HSP 1 Score: 73.9 bits (180), Expect = 4.36e-15
Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 1  MSAHGKIRISIPSSAKSVGDGDGVAAHTCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWTR 60
          M++HG + +S  +S KS G+G+ V   + S KGQCLCSPTTH GSFRCR HRS+S  W +
Sbjct: 1  MASHGNLTVS--TSPKS-GEGEAVTTSSGSPKGQCLCSPTTHQGSFRCRFHRSSSSAWMK 60

Query: 61 HSKTTASSSADASHTSDLSPKSVEST 86
           SK   ++ + A+     SPKSVEST
Sbjct: 61 RSKAMPANGSVAA----FSPKSVEST 79

[Close]

BLAST of Cp4.1LG18g04320 vs. ExPASy TrEMBL
Match: A0A5D3BJV5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00570 PE=4 SV=1)

HSP 1 Score: 132 bits (331), Expect = 2.48e-38
Identity = 68/85 (80.00%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 1  MSAHGKIRISIPSSAKSVGDGDGVAAHTCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWTR 60
          M +  K+ ISIPS+AKS GDGDGVA H+CSSK QCLCSPTTHPGSFRCRLHRSNSLPW+R
Sbjct: 1  MGSQPKMSISIPSTAKSAGDGDGVAGHSCSSKAQCLCSPTTHPGSFRCRLHRSNSLPWSR 60

Query: 61 HSKTTASSSADASHTSDLSPKSVES 85
           SK+TA+S ADAS+TSDLSPKSVES
Sbjct: 61 QSKSTAAS-ADASNTSDLSPKSVES 84

[Close]

BLAST of Cp4.1LG18g04320 vs. ExPASy TrEMBL
Match: A0A0A0LWJ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G369490 PE=4 SV=1)

HSP 1 Score: 125 bits (313), Expect = 1.46e-35
Identity = 66/87 (75.86%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 1  MSAHGKIRISIPSSAKSVGDGDGVA--AHTCSSKGQCLCSPTTHPGSFRCRLHRSNSLPW 60
          M +  K+ I IPS+AKS G+GDGV   +H+CSSKGQCLCSPTTHPGSFRCRLHRSNSLPW
Sbjct: 1  MGSQAKMSIRIPSTAKSAGEGDGVLGHSHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPW 60

Query: 61 TRHSKTTASSSADASHTSDLSPKSVES 85
          +R SK+TA+S ADAS+TSDLSPKSVES
Sbjct: 61 SRQSKSTAAS-ADASNTSDLSPKSVES 86

[Close]

BLAST of Cp4.1LG18g04320 vs. ExPASy TrEMBL
Match: A0A200PNZ0 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9069g38 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.03e-16
Identity = 46/87 (52.87%), Postives = 58/87 (66.67%), Query Frame = 0


Query: 1  MSAHGKIRISIPSSAKSVGDGDGVA-AHTCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWT 60
          M++HG I +S+  S K  G+G  VA A T S KGQCLCSPTTH GSFRCR HRS S  W 
Sbjct: 1  MTSHGTINVSL--SPKGNGNGQPVATASTNSPKGQCLCSPTTHNGSFRCRFHRSLSSTWR 60

Query: 61 RHSKTTASSSADASHTSDLSPKSVEST 86
               +  +++ A+ T+ +SPKSVEST
Sbjct: 61 MKRSKSMPANSTAAATTSISPKSVEST 85

[Close]

BLAST of Cp4.1LG18g04320 vs. ExPASy TrEMBL
Match: A0A5N6QHE2 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_003263 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.25e-14
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 1  MSAHGKIRISIPSSAKSVGDGDGVAAHTCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWTR 60
          M++HG + +S  +S KS G  + V   + S KGQCLCSPTTH GSFRCR HRS+S  W +
Sbjct: 1  MASHGSLTVS--TSPKS-GKEEPVGGASSSPKGQCLCSPTTHQGSFRCRFHRSSSSAWMK 60

Query: 61 HSKTTASSSADASHTSDLSPKSVEST 86
           SK+     A  S  + +SPKS+EST
Sbjct: 61 RSKSVP---AKTSSVASMSPKSIEST 80

[Close]

BLAST of Cp4.1LG18g04320 vs. ExPASy TrEMBL
Match: A0A7N2L171 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 9.17e-14
Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 1  MSAHGKIRISIPSSAKSVGDGDGVAAHTCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWTR 60
          M++HG +++S  +S KS G G+ V   T S KGQCLCSPTTH GSFRC+ HRS+S  W +
Sbjct: 1  MASHGSLKVS--TSPKS-GKGEAV---TTSPKGQCLCSPTTHEGSFRCKFHRSSSSAWMK 60

Query: 61 HSKTTASSSADASHTSDLSPKSVEST 86
           SK+   + + A+     SPKSVEST
Sbjct: 61 RSKSMPPNGSVAA----FSPKSVEST 76

[Close]

BLAST of Cp4.1LG18g04320 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 1.6e-07
Identity = 34/73 (46.58%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 13 SSAKSVGDGDGVAAHTCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWTRHSKTTASSSADA 72
          +SA  VG   G++  T  +K  CLCSPTTHPGSFRCR+HRS SL  T+        S +A
Sbjct: 23 NSAVEVG-SRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTK--------SIEA 82

Query: 73 SHTSDLSPKSVES 86
          +   D  PK  +S
Sbjct: 83 ASLLDSPPKPADS 86

[Close]

BLAST of Cp4.1LG18g04320 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 52.8 bits (125), Expect = 1.6e-07
Identity = 34/73 (46.58%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 13 SSAKSVGDGDGVAAHTCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWTRHSKTTASSSADA 72
          +SA  VG   G++  T  +K  CLCSPTTHPGSFRCR+HRS SL  T+        S +A
Sbjct: 23 NSAVEVG-SRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTK--------SIEA 82

Query: 73 SHTSDLSPKSVES 86
          +   D  PK  +S
Sbjct: 83 ASLLDSPPKPADS 86

[Close]

BLAST of Cp4.1LG18g04320 vs. TAIR 10
Match: AT1G24577.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.2); Has 115 Blast hits to 115 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.2e-05
Identity = 26/69 (37.68%), Postives = 39/69 (56.52%), Query Frame = 0


Query: 1  MSAHGKIRISIPSSAKSVGDGDGVAAHTCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWTR 60
          M+  G +      +A  +G   G++  T  +K  C+CSPTTHPGSF+C+LHR+ SL   +
Sbjct: 1  MNDKGNMETEASIAAMGLG---GLSRQTSITKTICICSPTTHPGSFKCKLHRTPSLQRNK 60

Query: 61 HSKTTASSS 70
            +T    S
Sbjct: 61 SVETNILQS 66

[Close]

BLAST of Cp4.1LG18g04320 vs. TAIR 10
Match: AT5G25280.1 (serine-rich protein-related )

HSP 1 Score: 45.4 bits (106), Expect = 2.6e-05
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 31  SKGQCLCSPTTHPGSFRCRLHRSNSLPWTRHSKTTAS 68
           S+ +C+CSPTTHPGSFRC LH++ + P   H + TAS
Sbjct: 122 SRRRCMCSPTTHPGSFRCSLHKNVANP---HGQGTAS 155

[Close]

BLAST of Cp4.1LG18g04320 vs. TAIR 10
Match: AT5G25280.2 (serine-rich protein-related )

HSP 1 Score: 45.4 bits (106), Expect = 2.6e-05
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 31  SKGQCLCSPTTHPGSFRCRLHRSNSLPWTRHSKTTAS 68
           S+ +C+CSPTTHPGSFRC LH++ + P   H + TAS
Sbjct: 122 SRRRCMCSPTTHPGSFRCSLHKNVANP---HGQGTAS 155

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g04320 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG18g04320 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589904.1	5.91e-53	100.00	hypothetical protein SDJN03_15327, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0046595.1	5.13e-38	80.00	hypothetical protein E6C27_scaffold114G001360 [Cucumis melo var. makuwa] >TYK001...	[more]
KAE8653119.1	4.93e-34	79.27	hypothetical protein Csa_020123 [Cucumis sativus]	[more]
OUZ99929.1	6.25e-16	52.87	hypothetical protein BVC80_9069g38 [Macleaya cordata]	[more]
KAF3961111.1	4.36e-15	51.16	hypothetical protein CMV_014232 [Castanea mollissima]	[more]

BLAST of Cp4.1LG18g04320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJV5	2.48e-38	80.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LWJ0	1.46e-35	75.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G369490 PE=4 SV=1	[more]
A0A200PNZ0	3.03e-16	52.87	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9069g38 PE=4 SV=1	[more]
A0A5N6QHE2	1.25e-14	50.00	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_003263 PE=4 SV=1	[more]
A0A7N2L171	9.17e-14	51.16	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Cp4.1LG18g04320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67910.1	1.6e-07	46.58	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67910.2	1.6e-07	46.58	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G24577.1	1.2e-05	37.68	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G25280.1	2.6e-05	56.76	serine-rich protein-related	[more]
AT5G25280.2	2.6e-05	56.76	serine-rich protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..86
None	No IPR available	PANTHER	PTHR33132:SF37	SERINE-RICH PROTEIN-LIKE PROTEIN	coord: 2..84
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 2..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g04320.1	Cp4.1LG18g04320.1	mRNA