
Cp4.1LG18g04320 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCAGCCCACGGAAAAATCAGGATCAGTATCCCTTCCTCCGCCAAAAGCGTTGGCGACGGTGACGGCGTGGCGGCTCACACATGTTCATCCAAAGGCCAATGCCTCTGCTCGCCCACCACTCATCCTGGATCCTTCCGTTGTCGTCTCCACCGTTCCAATTCGTTGCCCTGGACCAGGCACTCCAAGACCACTGCGTCGTCTTCGGCCGACGCCTCTCACACCTCAGATCTTTCTCCCAAGTCAGTTGAATCTACTTGA ATGTCAGCCCACGGAAAAATCAGGATCAGTATCCCTTCCTCCGCCAAAAGCGTTGGCGACGGTGACGGCGTGGCGGCTCACACATGTTCATCCAAAGGCCAATGCCTCTGCTCGCCCACCACTCATCCTGGATCCTTCCGTTGTCGTCTCCACCGTTCCAATTCGTTGCCCTGGACCAGGCACTCCAAGACCACTGCGTCGTCTTCGGCCGACGCCTCTCACACCTCAGATCTTTCTCCCAAGTCAGTTGAATCTACTTGA ATGTCAGCCCACGGAAAAATCAGGATCAGTATCCCTTCCTCCGCCAAAAGCGTTGGCGACGGTGACGGCGTGGCGGCTCACACATGTTCATCCAAAGGCCAATGCCTCTGCTCGCCCACCACTCATCCTGGATCCTTCCGTTGTCGTCTCCACCGTTCCAATTCGTTGCCCTGGACCAGGCACTCCAAGACCACTGCGTCGTCTTCGGCCGACGCCTCTCACACCTCAGATCTTTCTCCCAAGTCAGTTGAATCTACTTGA MSAHGKIRISIPSSAKSVGDGDGVAAHTCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWTRHSKTTASSSADASHTSDLSPKSVEST Homology
BLAST of Cp4.1LG18g04320 vs. NCBI nr
Match: KAG6589904.1 (hypothetical protein SDJN03_15327, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023574.1 hypothetical protein SDJN02_14600, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 169 bits (429), Expect = 5.91e-53 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0
BLAST of Cp4.1LG18g04320 vs. NCBI nr
Match: KAA0046595.1 (hypothetical protein E6C27_scaffold114G001360 [Cucumis melo var. makuwa] >TYK00101.1 hypothetical protein E5676_scaffold596G00570 [Cucumis melo var. makuwa]) HSP 1 Score: 132 bits (331), Expect = 5.13e-38 Identity = 68/85 (80.00%), Postives = 76/85 (89.41%), Query Frame = 0
BLAST of Cp4.1LG18g04320 vs. NCBI nr
Match: KAE8653119.1 (hypothetical protein Csa_020123 [Cucumis sativus]) HSP 1 Score: 123 bits (308), Expect = 4.93e-34 Identity = 65/82 (79.27%), Postives = 74/82 (90.24%), Query Frame = 0
BLAST of Cp4.1LG18g04320 vs. NCBI nr
Match: OUZ99929.1 (hypothetical protein BVC80_9069g38 [Macleaya cordata]) HSP 1 Score: 76.3 bits (186), Expect = 6.25e-16 Identity = 46/87 (52.87%), Postives = 58/87 (66.67%), Query Frame = 0
BLAST of Cp4.1LG18g04320 vs. NCBI nr
Match: KAF3961111.1 (hypothetical protein CMV_014232 [Castanea mollissima]) HSP 1 Score: 73.9 bits (180), Expect = 4.36e-15 Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 0
BLAST of Cp4.1LG18g04320 vs. ExPASy TrEMBL
Match: A0A5D3BJV5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00570 PE=4 SV=1) HSP 1 Score: 132 bits (331), Expect = 2.48e-38 Identity = 68/85 (80.00%), Postives = 76/85 (89.41%), Query Frame = 0
BLAST of Cp4.1LG18g04320 vs. ExPASy TrEMBL
Match: A0A0A0LWJ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G369490 PE=4 SV=1) HSP 1 Score: 125 bits (313), Expect = 1.46e-35 Identity = 66/87 (75.86%), Postives = 76/87 (87.36%), Query Frame = 0
BLAST of Cp4.1LG18g04320 vs. ExPASy TrEMBL
Match: A0A200PNZ0 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9069g38 PE=4 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 3.03e-16 Identity = 46/87 (52.87%), Postives = 58/87 (66.67%), Query Frame = 0
BLAST of Cp4.1LG18g04320 vs. ExPASy TrEMBL
Match: A0A5N6QHE2 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_003263 PE=4 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 1.25e-14 Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 0
BLAST of Cp4.1LG18g04320 vs. ExPASy TrEMBL
Match: A0A7N2L171 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 9.17e-14 Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 0
BLAST of Cp4.1LG18g04320 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 52.8 bits (125), Expect = 1.6e-07 Identity = 34/73 (46.58%), Postives = 43/73 (58.90%), Query Frame = 0
BLAST of Cp4.1LG18g04320 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). ) HSP 1 Score: 52.8 bits (125), Expect = 1.6e-07 Identity = 34/73 (46.58%), Postives = 43/73 (58.90%), Query Frame = 0
BLAST of Cp4.1LG18g04320 vs. TAIR 10
Match: AT1G24577.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.2); Has 115 Blast hits to 115 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 46.6 bits (109), Expect = 1.2e-05 Identity = 26/69 (37.68%), Postives = 39/69 (56.52%), Query Frame = 0
BLAST of Cp4.1LG18g04320 vs. TAIR 10
Match: AT5G25280.1 (serine-rich protein-related ) HSP 1 Score: 45.4 bits (106), Expect = 2.6e-05 Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 0
BLAST of Cp4.1LG18g04320 vs. TAIR 10
Match: AT5G25280.2 (serine-rich protein-related ) HSP 1 Score: 45.4 bits (106), Expect = 2.6e-05 Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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