Cp4.1LG18g04010 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG18g04010
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG18: 5258303 .. 5259496 (+)
RNA-Seq Expression	Cp4.1LG18g04010
Synteny	Cp4.1LG18g04010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTATCACACGAGGACGTCGAATCAGAGTGAGTCTTAGAGGCTACCATGTCCAAATTCCGACCGGAAACGTGGCCTGGTTAACCGTTAACCGTTAACCAACGACCTCAGTTTTTTTTTTAAGAGACGCCTAGATTTTTCAATCTCGAATTCAAACTCGAGACGACTGAAAATGAAAGCAAAATCCAAGCTGCGGCAAGCAGTAGACTTGCTTTGCTCTCGAAGCACCGCCACCTCTGAGGCCTACACCCAATTGGTCCTTGAATGTGTCCGTGCAAATGAAATCGACCAAGCTAAGAGACTGCAGTCCCACATGGAACACCATCTTTTCCAACCCCCTGATCCCTTTCTCCACAATCAGCTACTTCATTTGTACGCAAAATTCGGGAAGCTTCGGGATGCCCAAAACCTGTTTGATAAAATGCTTGAAAGGGATGTTTTCTCCTGGAATGCTCTGCTCTCTGCGTATGCTAAATCAGGGTCCATCCCGGATTTGCGGGCGACATTTGATCGAATGCCTTACCGCGATTCAGTTTCATACAATACGATCATAGCAGGTTTGTCTGGAAATAGTTTTCCAAAAGAGTCGCTTGAGCTTTTCAGAAGAATGCAGAGGGAGGGTCTTGCACCTACGGAGTATACAAATGTAAGCGCATTGAATGCATCTGCACAATTGTTGGATTTGAGGCGTGGGAAACAGATTCATGGGAGTGTTATTGTGCATAACTATTTAGGGAATGTGTTCATTTGCAATGCTTTAACAGATATGTATGCCAAATGTGGTGAGATTGAACAGGCAAGGTGGTTGTTTGATCGTCTCACTAACAAGAATTTGGTTTCTTGGAACTTGATGATATCTGGGTATGTAAAGAATGGACAGCCTGAGAAGTGCATTGGTTTGTTACATGAAATGCGCTTGTCTGGTCATATGCCTGATCAAGTTACCTTGTCAACTGTGATCGCAGCTTACTGTCAATGTGGGCGTGGAGATGAAGCAAGAAGGGTATTTAATGAGTTTAAAGACAAGGATATTGTTTGCTGGACAGCCATGTTGGTGGGTTATGCAAAAAGCGGCAGAGAAGAGGATGCACTGTTGTTGTTCAACGAAATGCTATTAGAACACTTTGAACCCGACAGCTACACATTATCCAGCGTCGTCAGTTCATGTGCCAAATTAGCATCTCTATGTCAT

mRNA sequence

ATGAAACGCCTAGATTTTTCAATCTCGAATTCAAACTCGAGACGACTGAAAATGAAAGCAAAATCCAAGCTGCGGCAAGCAGTAGACTTGCTTTGCTCTCGAAGCACCGCCACCTCTGAGGCCTACACCCAATTGGTCCTTGAATGTGTCCGTGCAAATGAAATCGACCAAGCTAAGAGACTGCAGTCCCACATGGAACACCATCTTTTCCAACCCCCTGATCCCTTTCTCCACAATCAGCTACTTCATTTGTACGCAAAATTCGGGAAGCTTCGGGATGCCCAAAACCTGTTTGATAAAATGCTTGAAAGGGATGTTTTCTCCTGGAATGCTCTGCTCTCTGCGTATGCTAAATCAGGGTCCATCCCGGATTTGCGGGCGACATTTGATCGAATGCCTTACCGCGATTCAGTTTCATACAATACGATCATAGCAGGTTTGTCTGGAAATAGTTTTCCAAAAGAGTCGCTTGAGCTTTTCAGAAGAATGCAGAGGGAGGCTTACTGTCAATGTGGGCGTGGAGATGAAGCAAGAAGGGTATTTAATGAGTTTAAAGACAAGGATATTGTTTGCTGGACAGCCATGTTGGTGGGTTATGCAAAAAGCGGCAGAGAAGAGGATGCACTGTTGTTGTTCAACGAAATGCTATTAGAACACTTTGAACCCGACAGCTACACATTATCCAGCGTCGTCAGTTCATGTGCCAAATTAGCATCTCTATGTCAT

Coding sequence (CDS)

ATGAAACGCCTAGATTTTTCAATCTCGAATTCAAACTCGAGACGACTGAAAATGAAAGCAAAATCCAAGCTGCGGCAAGCAGTAGACTTGCTTTGCTCTCGAAGCACCGCCACCTCTGAGGCCTACACCCAATTGGTCCTTGAATGTGTCCGTGCAAATGAAATCGACCAAGCTAAGAGACTGCAGTCCCACATGGAACACCATCTTTTCCAACCCCCTGATCCCTTTCTCCACAATCAGCTACTTCATTTGTACGCAAAATTCGGGAAGCTTCGGGATGCCCAAAACCTGTTTGATAAAATGCTTGAAAGGGATGTTTTCTCCTGGAATGCTCTGCTCTCTGCGTATGCTAAATCAGGGTCCATCCCGGATTTGCGGGCGACATTTGATCGAATGCCTTACCGCGATTCAGTTTCATACAATACGATCATAGCAGGTTTGTCTGGAAATAGTTTTCCAAAAGAGTCGCTTGAGCTTTTCAGAAGAATGCAGAGGGAGGCTTACTGTCAATGTGGGCGTGGAGATGAAGCAAGAAGGGTATTTAATGAGTTTAAAGACAAGGATATTGTTTGCTGGACAGCCATGTTGGTGGGTTATGCAAAAAGCGGCAGAGAAGAGGATGCACTGTTGTTGTTCAACGAAATGCTATTAGAACACTTTGAACCCGACAGCTACACATTATCCAGCGTCGTCAGTTCATGTGCCAAATTAGCATCTCTATGTCAT

Protein sequence

MKRLDFSISNSNSRRLKMKAKSKLRQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFLHNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIPDLRATFDRMPYRDSVSYNTIIAGLSGNSFPKESLELFRRMQREAYCQCGRGDEARRVFNEFKDKDIVCWTAMLVGYAKSGREEDALLLFNEMLLEHFEPDSYTLSSVVSSCAKLASLCH

Homology

[Close]

BLAST of Cp4.1LG18g04010 vs. ExPASy Swiss-Prot
Match: O23169 (Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H5 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.4e-29
Identity = 77/266 (28.95%), Postives = 126/266 (47.37%), Query Frame = 0


Query: 24  LRQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFLHNQLLH 83
           LR+AV LL       +  Y  L+  C +   +++ K++  H+    F  P   + N+LL 
Sbjct: 70  LREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGF-VPGIVIWNRLLR 129

Query: 84  LYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIPDLRATFDRMPYRDSVSYNTI 143
           +YAK G L DA+ +FD+M  RD+ SWN +++ YA+ G + + R  FD M  +DS S+  +
Sbjct: 130 MYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAM 189

Query: 144 IAGLSGNSFPKESLELFRRMQR-------------------------------------- 203
           + G      P+E+L L+  MQR                                      
Sbjct: 190 VTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAG 249

Query: 204 ------------EAYCQCGRGDEARRVFNEFKDKDIVCWTAMLVGYAKSGREEDALLLFN 240
                       + Y +CG  DEAR +F++  +KD+V WT+M+  Y KS R  +   LF+
Sbjct: 250 LDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFS 309

[Close]

BLAST of Cp4.1LG18g04010 vs. ExPASy Swiss-Prot
Match: Q9SZT8 (Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELI1 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.1e-24
Identity = 69/213 (32.39%), Postives = 100/213 (46.95%), Query Frame = 0


Query: 74  DPFLHNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIPDLRATFDRMP 133
           DP++   L+ +YAK G +  AQ +FD+M ER + S  A+++ YAK G++   RA FD M 
Sbjct: 160 DPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMC 219

Query: 134 YRDSVSYNTIIAGLSGNSFPKESLELFRRMQREA-------------------------- 193
            RD VS+N +I G + + FP ++L LF+++  E                           
Sbjct: 220 ERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGR 279

Query: 194 ------------------------YCQCGRGDEARRVFNEFKDKDIVCWTAMLVGYAKSG 236
                                   Y +CG  +EA  VFN+   KDIV W AM+ GYA  G
Sbjct: 280 WIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHG 339

[Close]

BLAST of Cp4.1LG18g04010 vs. ExPASy Swiss-Prot
Match: Q1PEU4 (Pentatricopeptide repeat-containing protein At2g44880 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E9 PE=2 SV=2)

HSP 1 Score: 113.2 bits (282), Expect = 4.0e-24
Identity = 72/260 (27.69%), Postives = 116/260 (44.62%), Query Frame = 0


Query: 25  RQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFLHNQLLHL 84
           R A D +  RS     ++T L+   +R  E+D A +L   M H      D  ++N ++  
Sbjct: 133 RNAFDEMPHRSEV---SWTALISGYIRCGELDLASKLFDQMPH----VKDVVIYNAMMDG 192

Query: 85  YAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIPDLRATFDRMPYRDSVSYNTII 144
           + K G +  A+ LFD+M  + V +W  ++  Y     I   R  FD MP R+ VS+NT+I
Sbjct: 193 FVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMI 252

Query: 145 AGLSGNSFPKESLELFRRMQR--------------------------------------- 204
            G   N  P+E + LF+ MQ                                        
Sbjct: 253 GGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKL 312

Query: 205 -----------EAYCQCGRGDEARRVFNEFKDKDIVCWTAMLVGYAKSGREEDALLLFNE 235
                      + Y +CG  ++A+R+F+E  +K +  W AM+ GYA +G    AL LF  
Sbjct: 313 DKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVT 372

[Close]

BLAST of Cp4.1LG18g04010 vs. ExPASy Swiss-Prot
Match: Q9SKQ4 (Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E48 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.9e-24
Identity = 83/310 (26.77%), Postives = 131/310 (42.26%), Query Frame = 0


Query: 17  KMKAKSKLRQAVDLLCSRS----TATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQP 76
           K   K++L QAV  L S +        +    L+ +C     + Q K +  H++   F+ 
Sbjct: 20  KHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKITGFKR 79

Query: 77  PDPFLHNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIPDLRATFDRM 136
           P+  L N L+ +Y K GK  DA  +FD+M  R+++SWN ++S Y KSG +   R  FD M
Sbjct: 80  PNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSM 139

Query: 137 PYRDSVSYNTIIAGLSGNSFPKESLELFRRMQR--------------------------- 196
           P RD VS+NT++ G + +    E+L  ++  +R                           
Sbjct: 140 PERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNR 199

Query: 197 ----------------------EAYCQCGRGDEARRVFNEFKDKDI-------------- 243
                                 +AY +CG+ + A+R F+E   KDI              
Sbjct: 200 QAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLG 259

[Close]

BLAST of Cp4.1LG18g04010 vs. ExPASy Swiss-Prot
Match: Q9SY02 (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.9e-24
Identity = 71/229 (31.00%), Postives = 120/229 (52.40%), Query Frame = 0


Query: 22  SKLRQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFLHNQL 81
           SK+ +A  L  SR      ++  L+   V+  +I +A++    M        D    N +
Sbjct: 202 SKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVR-----DVVSWNTI 261

Query: 82  LHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIPDLRATFDRMPYRDSVSYN 141
           +  YA+ GK+ +A+ LFD+   +DVF+W A++S Y ++  + + R  FD+MP R+ VS+N
Sbjct: 262 ITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWN 321

Query: 142 TIIAGLSGNSFPKESLELFRRM----------QREAYCQCGRGDEARRVFNEFKDKDIVC 201
            ++AG       + + ELF  M              Y QCG+  EA+ +F++   +D V 
Sbjct: 322 AMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVS 381

Query: 202 WTAMLVGYAKSGREEDALLLFNEMLLEHFEPDSYTLSSVVSSCAKLASL 241
           W AM+ GY++SG   +AL LF +M  E    +  + SS +S+CA + +L
Sbjct: 382 WAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVAL 425

[Close]

BLAST of Cp4.1LG18g04010 vs. NCBI nr
Match: XP_023516538.1 (pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 405 bits (1041), Expect = 8.07e-135
Identity = 225/340 (66.18%), Postives = 225/340 (66.18%), Query Frame = 0


Query: 18  MKAKSKLRQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL 77
           MKAKSKLRQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL
Sbjct: 1   MKAKSKLRQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL 60

Query: 78  HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIPDLRATFDRMPYRDS 137
           HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIPDLRATFDRMPYRDS
Sbjct: 61  HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIPDLRATFDRMPYRDS 120

Query: 138 VSYNTIIAGLSGNSFPKESLELFRRMQRE------------------------------- 197
           VSYNTIIAGLSGNSFPKESLELFRRMQRE                               
Sbjct: 121 VSYNTIIAGLSGNSFPKESLELFRRMQREGLAPTEYTNVSALNASAQLLDLRRGKQIHGS 180

Query: 198 ------------------------------------------------------------ 242
                                                                       
Sbjct: 181 VIVHNYLGNVFICNALTDMYAKCGEIEQARWLFDRLTNKNLVSWNLMISGYVKNGQPEKC 240

[Close]

BLAST of Cp4.1LG18g04010 vs. NCBI nr
Match: XP_022960690.1 (pentatricopeptide repeat-containing protein At2g13600-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 395 bits (1016), Expect = 2.35e-133
Identity = 222/340 (65.29%), Postives = 222/340 (65.29%), Query Frame = 0


Query: 18  MKAKSKLRQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL 77
           MKAKSKLRQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL
Sbjct: 1   MKAKSKLRQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL 60

Query: 78  HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIPDLRATFDRMPYRDS 137
           HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSI DLRATFDRMPYRDS
Sbjct: 61  HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIQDLRATFDRMPYRDS 120

Query: 138 VSYNTIIAGLSGNSFPKESLELFRRMQRE------------------------------- 197
           VSYNTIIAGLSGNSFPKESLELFRRMQRE                               
Sbjct: 121 VSYNTIIAGLSGNSFPKESLELFRRMQREGLAPTEYTNVSALNASAQLLDLRRGKQIHGS 180

Query: 198 ------------------------------------------------------------ 242
                                                                       
Sbjct: 181 VIVHNYLGNVFICNALTDMYAKCGEIEQARWLFDRLTNKNLVSWNLMISGYVKNGQPEKC 240

[Close]

BLAST of Cp4.1LG18g04010 vs. NCBI nr
Match: XP_022987633.1 (putative pentatricopeptide repeat-containing protein At1g68930 isoform X2 [Cucurbita maxima])

HSP 1 Score: 391 bits (1004), Expect = 1.54e-131
Identity = 220/340 (64.71%), Postives = 220/340 (64.71%), Query Frame = 0


Query: 18  MKAKSKLRQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL 77
           MKAKSKLRQAV LLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL
Sbjct: 1   MKAKSKLRQAVALLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL 60

Query: 78  HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIPDLRATFDRMPYRDS 137
           HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSI DLRATFDRMPYRDS
Sbjct: 61  HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIQDLRATFDRMPYRDS 120

Query: 138 VSYNTIIAGLSGNSFPKESLELFRRMQRE------------------------------- 197
           VSYNTIIAGLSGNSFPKESLELFRRMQRE                               
Sbjct: 121 VSYNTIIAGLSGNSFPKESLELFRRMQREGLEPTEYTNVSALNASAQLLDLRRGKQIHGS 180

Query: 198 ------------------------------------------------------------ 242
                                                                       
Sbjct: 181 VIVHNYLGNVFICNALTDMYAKCGEIEHARWLFDRLTNKNLVSWNLMISGYVKNGQPEKC 240

[Close]

BLAST of Cp4.1LG18g04010 vs. NCBI nr
Match: XP_022960689.1 (pentatricopeptide repeat-containing protein At4g02750-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 395 bits (1016), Expect = 4.66e-131
Identity = 222/340 (65.29%), Postives = 222/340 (65.29%), Query Frame = 0


Query: 18  MKAKSKLRQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL 77
           MKAKSKLRQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL
Sbjct: 1   MKAKSKLRQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL 60

Query: 78  HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIPDLRATFDRMPYRDS 137
           HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSI DLRATFDRMPYRDS
Sbjct: 61  HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIQDLRATFDRMPYRDS 120

Query: 138 VSYNTIIAGLSGNSFPKESLELFRRMQRE------------------------------- 197
           VSYNTIIAGLSGNSFPKESLELFRRMQRE                               
Sbjct: 121 VSYNTIIAGLSGNSFPKESLELFRRMQREGLAPTEYTNVSALNASAQLLDLRRGKQIHGS 180

Query: 198 ------------------------------------------------------------ 242
                                                                       
Sbjct: 181 VIVHNYLGNVFICNALTDMYAKCGEIEQARWLFDRLTNKNLVSWNLMISGYVKNGQPEKC 240

[Close]

BLAST of Cp4.1LG18g04010 vs. NCBI nr
Match: KAG6589945.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 395 bits (1016), Expect = 4.66e-131
Identity = 222/340 (65.29%), Postives = 222/340 (65.29%), Query Frame = 0


Query: 18  MKAKSKLRQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL 77
           MKAKSKLRQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL
Sbjct: 1   MKAKSKLRQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL 60

Query: 78  HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIPDLRATFDRMPYRDS 137
           HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSI DLRATFDRMPYRDS
Sbjct: 61  HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIQDLRATFDRMPYRDS 120

Query: 138 VSYNTIIAGLSGNSFPKESLELFRRMQRE------------------------------- 197
           VSYNTIIAGLSGNSFPKESLELFRRMQRE                               
Sbjct: 121 VSYNTIIAGLSGNSFPKESLELFRRMQREGLAPTEYTNVSALNASAQLLDLRRGKQIHGS 180

Query: 198 ------------------------------------------------------------ 242
                                                                       
Sbjct: 181 VIVHNYLGNVFICNALTDMYAKCGEIEQARWLFDRLTNKNLVSWNLMISGYVKNGQPEKC 240

[Close]

BLAST of Cp4.1LG18g04010 vs. ExPASy TrEMBL
Match: A0A6J1H9T7 (pentatricopeptide repeat-containing protein At2g13600-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461409 PE=4 SV=1)

HSP 1 Score: 395 bits (1016), Expect = 1.14e-133
Identity = 222/340 (65.29%), Postives = 222/340 (65.29%), Query Frame = 0


Query: 18  MKAKSKLRQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL 77
           MKAKSKLRQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL
Sbjct: 1   MKAKSKLRQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL 60

Query: 78  HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIPDLRATFDRMPYRDS 137
           HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSI DLRATFDRMPYRDS
Sbjct: 61  HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIQDLRATFDRMPYRDS 120

Query: 138 VSYNTIIAGLSGNSFPKESLELFRRMQRE------------------------------- 197
           VSYNTIIAGLSGNSFPKESLELFRRMQRE                               
Sbjct: 121 VSYNTIIAGLSGNSFPKESLELFRRMQREGLAPTEYTNVSALNASAQLLDLRRGKQIHGS 180

Query: 198 ------------------------------------------------------------ 242
                                                                       
Sbjct: 181 VIVHNYLGNVFICNALTDMYAKCGEIEQARWLFDRLTNKNLVSWNLMISGYVKNGQPEKC 240

[Close]

BLAST of Cp4.1LG18g04010 vs. ExPASy TrEMBL
Match: A0A6J1JK08 (putative pentatricopeptide repeat-containing protein At1g68930 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485131 PE=4 SV=1)

HSP 1 Score: 391 bits (1004), Expect = 7.46e-132
Identity = 220/340 (64.71%), Postives = 220/340 (64.71%), Query Frame = 0


Query: 18  MKAKSKLRQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL 77
           MKAKSKLRQAV LLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL
Sbjct: 1   MKAKSKLRQAVALLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL 60

Query: 78  HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIPDLRATFDRMPYRDS 137
           HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSI DLRATFDRMPYRDS
Sbjct: 61  HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIQDLRATFDRMPYRDS 120

Query: 138 VSYNTIIAGLSGNSFPKESLELFRRMQRE------------------------------- 197
           VSYNTIIAGLSGNSFPKESLELFRRMQRE                               
Sbjct: 121 VSYNTIIAGLSGNSFPKESLELFRRMQREGLEPTEYTNVSALNASAQLLDLRRGKQIHGS 180

Query: 198 ------------------------------------------------------------ 242
                                                                       
Sbjct: 181 VIVHNYLGNVFICNALTDMYAKCGEIEHARWLFDRLTNKNLVSWNLMISGYVKNGQPEKC 240

[Close]

BLAST of Cp4.1LG18g04010 vs. ExPASy TrEMBL
Match: A0A6J1HBT0 (pentatricopeptide repeat-containing protein At4g02750-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461409 PE=3 SV=1)

HSP 1 Score: 395 bits (1016), Expect = 2.25e-131
Identity = 222/340 (65.29%), Postives = 222/340 (65.29%), Query Frame = 0


Query: 18  MKAKSKLRQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL 77
           MKAKSKLRQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL
Sbjct: 1   MKAKSKLRQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL 60

Query: 78  HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIPDLRATFDRMPYRDS 137
           HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSI DLRATFDRMPYRDS
Sbjct: 61  HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIQDLRATFDRMPYRDS 120

Query: 138 VSYNTIIAGLSGNSFPKESLELFRRMQRE------------------------------- 197
           VSYNTIIAGLSGNSFPKESLELFRRMQRE                               
Sbjct: 121 VSYNTIIAGLSGNSFPKESLELFRRMQREGLAPTEYTNVSALNASAQLLDLRRGKQIHGS 180

Query: 198 ------------------------------------------------------------ 242
                                                                       
Sbjct: 181 VIVHNYLGNVFICNALTDMYAKCGEIEQARWLFDRLTNKNLVSWNLMISGYVKNGQPEKC 240

[Close]

BLAST of Cp4.1LG18g04010 vs. ExPASy TrEMBL
Match: A0A6J1JAW4 (pentatricopeptide repeat-containing protein At4g02750-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485131 PE=3 SV=1)

HSP 1 Score: 391 bits (1004), Expect = 1.44e-129
Identity = 220/340 (64.71%), Postives = 220/340 (64.71%), Query Frame = 0


Query: 18  MKAKSKLRQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL 77
           MKAKSKLRQAV LLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL
Sbjct: 1   MKAKSKLRQAVALLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL 60

Query: 78  HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIPDLRATFDRMPYRDS 137
           HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSI DLRATFDRMPYRDS
Sbjct: 61  HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIQDLRATFDRMPYRDS 120

Query: 138 VSYNTIIAGLSGNSFPKESLELFRRMQRE------------------------------- 197
           VSYNTIIAGLSGNSFPKESLELFRRMQRE                               
Sbjct: 121 VSYNTIIAGLSGNSFPKESLELFRRMQREGLEPTEYTNVSALNASAQLLDLRRGKQIHGS 180

Query: 198 ------------------------------------------------------------ 242
                                                                       
Sbjct: 181 VIVHNYLGNVFICNALTDMYAKCGEIEHARWLFDRLTNKNLVSWNLMISGYVKNGQPEKC 240

[Close]

BLAST of Cp4.1LG18g04010 vs. ExPASy TrEMBL
Match: A0A5A7UC76 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00590 PE=3 SV=1)

HSP 1 Score: 359 bits (921), Expect = 4.13e-117
Identity = 202/340 (59.41%), Postives = 214/340 (62.94%), Query Frame = 0


Query: 18  MKAKSKLRQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFL 77
           MKAKS LRQ+VDLLCSRSTATSEAYTQLVLECVR NEI+QAKRLQSHMEHHLFQP DPFL
Sbjct: 1   MKAKSTLRQSVDLLCSRSTATSEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDPFL 60

Query: 78  HNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIPDLRATFDRMPYRDS 137
           HNQLLHLYAKFGKLRDAQNLFDKML+RD FSWNALLSAYAKSGSI +L+ATFDRMP+RDS
Sbjct: 61  HNQLLHLYAKFGKLRDAQNLFDKMLKRDTFSWNALLSAYAKSGSIQNLKATFDRMPFRDS 120

Query: 138 VSYNTIIAGLSGNSFPKESLELFRRMQRE------------------------------- 197
           VSYNT IAG SGNS P+ESL+LF+RMQRE                               
Sbjct: 121 VSYNTTIAGFSGNSCPQESLQLFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGS 180

Query: 198 ------------------------------------------------------------ 242
                                                                       
Sbjct: 181 IIVRNFLGNVFIWNTLTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKC 240

[Close]

BLAST of Cp4.1LG18g04010 vs. TAIR 10
Match: AT4G37170.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 129.4 bits (324), Expect = 3.9e-30
Identity = 77/266 (28.95%), Postives = 126/266 (47.37%), Query Frame = 0


Query: 24  LRQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFLHNQLLH 83
           LR+AV LL       +  Y  L+  C +   +++ K++  H+    F  P   + N+LL 
Sbjct: 70  LREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGF-VPGIVIWNRLLR 129

Query: 84  LYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIPDLRATFDRMPYRDSVSYNTI 143
           +YAK G L DA+ +FD+M  RD+ SWN +++ YA+ G + + R  FD M  +DS S+  +
Sbjct: 130 MYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAM 189

Query: 144 IAGLSGNSFPKESLELFRRMQR-------------------------------------- 203
           + G      P+E+L L+  MQR                                      
Sbjct: 190 VTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAG 249

Query: 204 ------------EAYCQCGRGDEARRVFNEFKDKDIVCWTAMLVGYAKSGREEDALLLFN 240
                       + Y +CG  DEAR +F++  +KD+V WT+M+  Y KS R  +   LF+
Sbjct: 250 LDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFS 309

[Close]

BLAST of Cp4.1LG18g04010 vs. TAIR 10
Match: AT4G37380.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 113.6 bits (283), Expect = 2.2e-25
Identity = 69/213 (32.39%), Postives = 100/213 (46.95%), Query Frame = 0


Query: 74  DPFLHNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIPDLRATFDRMP 133
           DP++   L+ +YAK G +  AQ +FD+M ER + S  A+++ YAK G++   RA FD M 
Sbjct: 160 DPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMC 219

Query: 134 YRDSVSYNTIIAGLSGNSFPKESLELFRRMQREA-------------------------- 193
            RD VS+N +I G + + FP ++L LF+++  E                           
Sbjct: 220 ERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGR 279

Query: 194 ------------------------YCQCGRGDEARRVFNEFKDKDIVCWTAMLVGYAKSG 236
                                   Y +CG  +EA  VFN+   KDIV W AM+ GYA  G
Sbjct: 280 WIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHG 339

[Close]

BLAST of Cp4.1LG18g04010 vs. TAIR 10
Match: AT2G44880.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 113.2 bits (282), Expect = 2.9e-25
Identity = 72/260 (27.69%), Postives = 116/260 (44.62%), Query Frame = 0


Query: 25  RQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFLHNQLLHL 84
           R A D +  RS     ++T L+   +R  E+D A +L   M H      D  ++N ++  
Sbjct: 133 RNAFDEMPHRSEV---SWTALISGYIRCGELDLASKLFDQMPH----VKDVVIYNAMMDG 192

Query: 85  YAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIPDLRATFDRMPYRDSVSYNTII 144
           + K G +  A+ LFD+M  + V +W  ++  Y     I   R  FD MP R+ VS+NT+I
Sbjct: 193 FVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMI 252

Query: 145 AGLSGNSFPKESLELFRRMQR--------------------------------------- 204
            G   N  P+E + LF+ MQ                                        
Sbjct: 253 GGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKL 312

Query: 205 -----------EAYCQCGRGDEARRVFNEFKDKDIVCWTAMLVGYAKSGREEDALLLFNE 235
                      + Y +CG  ++A+R+F+E  +K +  W AM+ GYA +G    AL LF  
Sbjct: 313 DKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVT 372

[Close]

BLAST of Cp4.1LG18g04010 vs. TAIR 10
Match: AT2G21090.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 112.5 bits (280), Expect = 4.9e-25
Identity = 83/310 (26.77%), Postives = 131/310 (42.26%), Query Frame = 0


Query: 17  KMKAKSKLRQAVDLLCSRS----TATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQP 76
           K   K++L QAV  L S +        +    L+ +C     + Q K +  H++   F+ 
Sbjct: 20  KHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKITGFKR 79

Query: 77  PDPFLHNQLLHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIPDLRATFDRM 136
           P+  L N L+ +Y K GK  DA  +FD+M  R+++SWN ++S Y KSG +   R  FD M
Sbjct: 80  PNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSM 139

Query: 137 PYRDSVSYNTIIAGLSGNSFPKESLELFRRMQR--------------------------- 196
           P RD VS+NT++ G + +    E+L  ++  +R                           
Sbjct: 140 PERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNR 199

Query: 197 ----------------------EAYCQCGRGDEARRVFNEFKDKDI-------------- 243
                                 +AY +CG+ + A+R F+E   KDI              
Sbjct: 200 QAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLG 259

[Close]

BLAST of Cp4.1LG18g04010 vs. TAIR 10
Match: AT4G02750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 112.5 bits (280), Expect = 4.9e-25
Identity = 71/229 (31.00%), Postives = 120/229 (52.40%), Query Frame = 0


Query: 22  SKLRQAVDLLCSRSTATSEAYTQLVLECVRANEIDQAKRLQSHMEHHLFQPPDPFLHNQL 81
           SK+ +A  L  SR      ++  L+   V+  +I +A++    M        D    N +
Sbjct: 202 SKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVR-----DVVSWNTI 261

Query: 82  LHLYAKFGKLRDAQNLFDKMLERDVFSWNALLSAYAKSGSIPDLRATFDRMPYRDSVSYN 141
           +  YA+ GK+ +A+ LFD+   +DVF+W A++S Y ++  + + R  FD+MP R+ VS+N
Sbjct: 262 ITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWN 321

Query: 142 TIIAGLSGNSFPKESLELFRRM----------QREAYCQCGRGDEARRVFNEFKDKDIVC 201
            ++AG       + + ELF  M              Y QCG+  EA+ +F++   +D V 
Sbjct: 322 AMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVS 381

Query: 202 WTAMLVGYAKSGREEDALLLFNEMLLEHFEPDSYTLSSVVSSCAKLASL 241
           W AM+ GY++SG   +AL LF +M  E    +  + SS +S+CA + +L
Sbjct: 382 WAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVAL 425

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g04010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23169	5.4e-29	28.95	Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana OX...	[more]
Q9SZT8	3.1e-24	32.39	Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis t...	[more]
Q1PEU4	4.0e-24	27.69	Pentatricopeptide repeat-containing protein At2g44880 OS=Arabidopsis thaliana OX...	[more]
Q9SKQ4	6.9e-24	26.77	Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana OX...	[more]
Q9SY02	6.9e-24	31.00	Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX...	[more]

BLAST of Cp4.1LG18g04010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023516538.1	8.07e-135	66.18	pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita pepo subsp...	[more]
XP_022960690.1	2.35e-133	65.29	pentatricopeptide repeat-containing protein At2g13600-like isoform X2 [Cucurbita...	[more]
XP_022987633.1	1.54e-131	64.71	putative pentatricopeptide repeat-containing protein At1g68930 isoform X2 [Cucur...	[more]
XP_022960689.1	4.66e-131	65.29	pentatricopeptide repeat-containing protein At4g02750-like isoform X1 [Cucurbita...	[more]
KAG6589945.1	4.66e-131	65.29	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]

BLAST of Cp4.1LG18g04010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H9T7	1.14e-133	65.29	pentatricopeptide repeat-containing protein At2g13600-like isoform X2 OS=Cucurbi...	[more]
A0A6J1JK08	7.46e-132	64.71	putative pentatricopeptide repeat-containing protein At1g68930 isoform X2 OS=Cuc...	[more]
A0A6J1HBT0	2.25e-131	65.29	pentatricopeptide repeat-containing protein At4g02750-like isoform X1 OS=Cucurbi...	[more]
A0A6J1JAW4	1.44e-129	64.71	pentatricopeptide repeat-containing protein At4g02750-like isoform X1 OS=Cucurbi...	[more]
A0A5A7UC76	4.13e-117	59.41	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Cp4.1LG18g04010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37170.1	3.9e-30	28.95	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G37380.1	2.2e-25	32.39	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G44880.1	2.9e-25	27.69	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT2G21090.1	4.9e-25	26.77	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT4G02750.1	4.9e-25	31.00	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 153..240 e-value: 2.7E-22 score: 81.0 coord: 8..135 e-value: 1.3E-20 score: 75.5
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 187..236 e-value: 1.0E-10 score: 41.7
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 107..133 e-value: 0.0036 score: 17.5 coord: 79..105 e-value: 1.5E-4 score: 21.8 coord: 138..166 e-value: 3.6E-5 score: 23.7
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 167..190 e-value: 9.0E-4 score: 17.3 coord: 190..224 e-value: 5.2E-8 score: 30.6 coord: 138..165 e-value: 2.2E-4 score: 19.2
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 136..170 score: 9.766576
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 74..108 score: 10.194067
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 188..222 score: 11.465577
None	No IPR available	PANTHER	PTHR47926:SF216	SUBFAMILY NOT NAMED	coord: 80..132 coord: 166..242
None	No IPR available	PANTHER	PTHR47926	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 80..132 coord: 166..242
None	No IPR available	PANTHER	PTHR47926:SF216	SUBFAMILY NOT NAMED	coord: 19..73
None	No IPR available	PANTHER	PTHR47926	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 19..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g04010.1	Cp4.1LG18g04010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding