Cp4.1LG18g00750 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG18g00750
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionDNA excision repair protein ERCC-1
LocationCp4.1LG18: 1875934 .. 1881151 (-)
RNA-Seq ExpressionCp4.1LG18g00750
SyntenyCp4.1LG18g00750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAGATTAATCCTATTTTGCAGTCTTCGGTATCATCTACTGCATCCGGACTACCTATACTACCGTATAAGAGAACTACAAAAAAATTTCAAGCTTCGAGTCGTTCTGTGTCATGTCGATGTGGTAAGAAACCGTACCGCCTAGCCACCTTTTTTCTTACCCTGTTCTCCATTTTCCAGATTAAGTCTTCGTAGTCATTTTGATGCTCGTGTGAAGTAACGTCATCGATTAGTTTCTTTCAGGAAGATGTTGTCAAGCCTTTGCTTGAAGTCACCAAAACAGCTCTACTTCACGATTGTACCCTTCTTTGTGCTTGGAGGTACATTTCATTATTAAGCATTTTAGTGCCGTCTATTGAAGATTTTGGTAAGTATTATATTGCAAAGTGAATTTAAAAGTTTGATTTCTGTTTTTTTATTAGTTTGGAGGAGTGTGGTCGTTACTTGGAGACTATAAAAGTTTACGAAAACAAGCCCGCAGATCTTATTCAAGGTCAGATGGATACCGACTACCTCTCTCGGGTATTGGTTTTCTTGAAGCTTTTTGCCTATTCAACATTAATTTATGTGGTTGTGATACCACTGTGAGATCCCACGTCGGTTGGGGAGGAGAACGGAACATTCTTTATAAGGGTGTGGAAACCTCCCTCTAGCAGACACGTTTTAAAAACCTTGAGGGGAAGCTTGAAAAGGAAAGCTCAAAGAGGACAATATTTGCTAGCGGTGGATTTTGGTTGTTACAACCACGATCAACTATAGCCTCTTTTTTATTTCCAAAAAGCTATATCCACAACAACTATATTCTGAATTAAAATTCTGGTTTTAATTGTAGCTTACTCATGTCCTAACATCAGTTCGGCATGTTAACAAGACTGATGTGGTTACCCTCGGGACGACATTTGGGGTACGCCTGCTGTATTTTCGCTAAGATTCTTCCGTTCTTGTCTGTTATGTCTTGTTTGGTGTCGAACTGCTAATTAGTTTTCCATTGCAGTCTCTGTCTCATGTCATGGATGCATCAATGGAAGATCTAGCTCGTTGCCCGGGCATAGGTGAACGCAAGGTAGACCTTTTTTTTCGAAGCACGACCCTTTTTCGAGTGTGTCCTTAGTTCTTGTTATCTGTACTCTTACTCGTTGGGTTCGCAAATTTATTTTGAAAATGTACCATGTCTTTGATGTCATTCATAACATTTGAGCTGGTTTTAGCTAGAAGGATAGCTTTGTTTGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCGAGGGGAAGGGAAAGCCCAAAGAGGATATCTGCTAGCAGTGGGCTTGGGCCAGACACCGGGCGATGTGCCAGCGAGGAGGCTGAGTCTCGAAGGGGGTGGACACGAGGTGGTGTGCCAGTAAGGATGTTGGGCCTCCAAGGGGGTGGATTGGGGGGTCCCACATCGATTGGAGAAGGGAACGAGTGCCGGTGAGGACGCTGGGTCCCAAAGGGGGGTGGATTTTGAGATCCCATATCGGTTGGGGAGGAGAATGAAACATTCTTTATAAGGGTGTGGAAACCTCTCTCTAATAGATGCGTTTTAAAAACTTTGATGGGAGGCCCGAGAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGATTTGGGAAGTTACCTTCTTTTTATCAACAAGACAATAACATGTTTTTAATATACAAGTAATCATAGAAACATTTACAACTATTAGATAATGGTATGCTGGGGAAGATGCAAATGAACACGAGCGTCACATAGTGACATACCGTATCGATAACATTTAGCCTTCAACTGTGATATACGTAGCTCGTTTGTTTGCACGAATGCTGTTATTAAATTCATCTTCCTCATCAGGTAAGGCGGCTGTACGACACTTTTCATGAGCCATTCAAGCGTGTCATTTCAACCCATCCTGCCGTTCTAGAAACTCCAACCCAGAATAATACCGAACCTCGCTCGATCGGTGAAGAACAAGATGTGGATGGGAAGAACACAGAAGATGCTAGCCAACACAAAAAAGAACCTGAATTGAACATCAAATCAGCTCTGNCCAAATCCAACCAAATAAAAGCATTCAACACAATCAGAAGAACCAATGCTTGTCTAGACTTTGGGGGCCCGAGTGCCCCAGGGTATAGGGGAGAATATCCCCGACTCCCGGTTATAAACAAAAGGTCAAATGTAACAACAAACGCCCAAATCCAAACCAAATAAAAGCATTCAACACAATTAGAAGAACCAATGCCTGTCTAGACTTTGGGGGCCCGAGTGCCCCAGGGTATAGGGGAGCGTATCCCTGACTCTTGGTTATAAACAAACTGTTAAATGTAACAACAAACGCACAAATCCAACCAAATAAAAGCATTCAACACAATCAGAAGAACCCGTGCCCGTCTAGACCTTGGAGGCCTGAGTGCCTCAGGGTATAGAGGAGCATATCCCCGACTCCTGATTATAAATAAATGGTCAAATGTAACAACAAATGCCCAAATTCAACCAAATAAAAGCATTCAACACAATCAGAAGAACCAATGCCTGTCTAGACCTTGAGGGCCCGAGTTCCTCCAGGTACAGGGGAGCATATCCCTGACTCCCGGTTATAAATAAACTGTCAAATGTAACAACAAACGCACAAATCCAACCAAATAAAAGCATTCAACACAATCAGAAGAACCCGTGCTCGTCTAGACCTTGAGGGTCCGAGTGCCTCAGGGTATAGGGGAGCATATCCCTGACTCCCGATTATAAATAAACTGTCAAACATAACAACAAATGCCCAAATCCAAACCAAACAAAAGCATTCAACACAATCAGAAGAACCAATGCCCGTCTAGACCTTGGGGGCCTTAGTGCCTCAGGGTATAGGGGGCATATCCCGAACCCCCGATTATAAATAAACTGTCAAATGTAACAACAAACGCCCAAGTCCAACCAAATAAAAGCATTCAACACAATTAGAAGAACCAGTGCCCGTCTAGACCTTGGAGGCCTGAGTGCCTCAGGGTATAGAGGAGCATATCCCCGACTCCCGATTATAAATAAATGGTCAAATGTAACAACAAATGCCCAAATTCAACCAAATAAAAGCATTCAACACAATCAGAAGAACCAATGCCTGTCTAGACCTTGAGGGCCCGAGTTCCTCCAGGTACAGGGGAGCATATCCCTGACTCCCGGTTATAAATAAACTGTCAAATGTAACAACAAACGCACAAATCCAACCAAATAAAAGCATTCAACACAATCAGAAGAACCCGTGCTCGTCTAGACCTTGAGGGTCCGAGTGCCTCAGGGTATAGGGGAGCATATCCCTGACTCCCGATTATAAATAAACTGTCAAACATAACAACAAATGCCCAAATCCAAACCAAACAAAAGCATTCAACACAATCAGAAGAACCAATGCCCGTCTAGACCTTGGGGGCCTTAGTGCCTCAGGGTATAGGGGGCATATCCCGAACCCCCGATTATAAATAAACTGTCAAATGTAACAACAAACGCCCAAGTCCAACCAAATAAAAGCATTCAACACAATTAGAAGAACCAGTGCCCGTCTAGACCTTGGAGGTCTGAGTGCCTCAGGGTATAGAGGAGCATATCCCCGACTCCCGATTATAAATAAATGGTCAAATGTAACAACAAATGCCCAAATTCAACCAAATAAAAGCATTCAACACAATCAGAAGAACCAATGCCTGTCTAGACCTTGGGGGCCCGAGTGCCCCAGGGTATAAGGGAGCATATCCATGACTCCCAGTTATAAATAAACGGTTCAATGTAACAACAAATACCCAAATCCCAACTAAATAGAAGCATTCAACACAACTAGAAGAGCCAGTGCTCGTCTAGACCTTGGAGGCCCGAGTGCCCCAGGGTATAGGGGAGCATATCCCTTAACTCCCAGTTATAAATAAACGGTCAAATGTAACAACAAATGCCTAAATCCAAACAAAATAAAAGCATTCAACACAATCAAAAGAACCAATGCTCGTCTATACCTTGGGGGCCTGAGTGCCTCAGGGTATAGGGGAGCACATCCCCGACTCCCAGTTATAAATAAACGGTAAAATGTAACAACAAATGCCCTAATCCAAACCAAACAAAACCATTCAACACAATTAGAAGAACCAATGCCCGTCTAGACCTTGGGGGCCTGAGTGCCCCAAGGGAGCATATCCCTGACTCCCGGTTATAAATAAACAATCAAACGTAACAACAAATTCCCAAATCCAAACCAAAAAAAAGCATTCAACACAATCAAAAGAACCAATGCCCATCGTTGGATTTGAGCGTTTGTGGTTACATTTGACCGTTTGTTTAGCCGGGAGTCGGGGATATGCTCCCCTATACCTTGGAGGCCCGAGTACCCCAAGGTATAGGGGAGCATATCCCCGACTCCCGGCTATAAACAAACTATCAAACGTAACAACAAACACCCAAATCCAACCGAACAAAAGCATTCAACACAATCACAAGAACCAATGCCTATTCAAATTCAGAATTCAAATCCAAGAACAAAGCTCATATTCCAATAACAAGAAGGCTGGCATTGTAAATGGATACTCAAAACAAGTTCAGTCAAGAGAGATATAAACAAAGAAGAATCAATGATAGCAATTGACCTCCATTCTGAAAGCACGTTCCCTCTGCTTCCCATCTCTATGGATCATCATAATAGCAACCACATCTCCATCTCCAAGAACTCCTCTATAAACAATCCCAAATCTTCCATTTCCAATCACATTAGCTTCATTAAAATGATCAGTAGCCAATTCCATTTCCTTGTAAGTGAAAACCTGAACTCCCCTGATTCTATACTTAGAAATCCTCCCAGAATTGGCTCCATATAAGTACCCACCCCCCTTAAATTCTGCAAAAATCCAAACCCAATTTACAATCAATTCAAGGAATGCAATAAAACGAATTGTGGGTGAAATTCAGTACCTGGGTTTGAATCGAAATTGATGGCTATGTGGGGGTTGAATGTGGTGGATTGTGCGGCGGCGGTGGCGGCGGCGGTGTCTCGAGCTAATTTGAGGCGGTGGAGCATGGAGATGAGGAGGAGGACGGCGAGGAGGACGGCGATGAAGATGATGGAGGCGATGATGATGAGGAAGGAATTGGAGGTGAGAAGAGCATTGTGGGCATGGATGTGGTGGTTTGGTGGTGGCGGTGTTGAATTGTGA

mRNA sequence

ATGGTTAGATTAATCCTATTTTGCAGTCTTCGGTATCATCTACTGCATCCGGACTACCTATACTACCGTATAAGAGAACTACAAAAAAATTTCAAGCTTCGAGTCGTTCTGTGTCATGTCGATGTGGAAGATGTTGTCAAGCCTTTGCTTGAAGTCACCAAAACAGCTCTACTTCACGATTGTACCCTTCTTTGTGCTTGGAGTTTGGAGGAGTGTGGTCGTTACTTGGAGACTATAAAAGTTTACGAAAACAAGCCCGCAGATCTTATTCAAGGTCAGATGGATACCGACTACCTCTCTCGGCTTACTCATGTCCTAACATCAGTTCGGCATGTTAACAAGACTGATGTGGTTACCCTCGGGACGACATTTGGGTCTCTGTCTCATGTCATGGATGCATCAATGGAAGATCTAGCTCGTTGCCCGGGCATAGTACCTGGGTTTGAATCGAAATTGATGGCTATGTGGGGGTTGAATGTGGTGGATTGTGCGGCGGCGGTGGCGGCGGCGGTGTCTCGAGCTAATTTGAGGCGGTGGAGCATGGAGATGAGGAGGAGGACGGCGAGGAGGACGGCGATGAAGATGATGGAGGCGATGATGATGAGGAAGGAATTGGAGGTGAGAAGAGCATTGTGGGCATGGATGTGGTGGTTTGGTGGTGGCGGTGTTGAATTGTGA

Coding sequence (CDS)

ATGGTTAGATTAATCCTATTTTGCAGTCTTCGGTATCATCTACTGCATCCGGACTACCTATACTACCGTATAAGAGAACTACAAAAAAATTTCAAGCTTCGAGTCGTTCTGTGTCATGTCGATGTGGAAGATGTTGTCAAGCCTTTGCTTGAAGTCACCAAAACAGCTCTACTTCACGATTGTACCCTTCTTTGTGCTTGGAGTTTGGAGGAGTGTGGTCGTTACTTGGAGACTATAAAAGTTTACGAAAACAAGCCCGCAGATCTTATTCAAGGTCAGATGGATACCGACTACCTCTCTCGGCTTACTCATGTCCTAACATCAGTTCGGCATGTTAACAAGACTGATGTGGTTACCCTCGGGACGACATTTGGGTCTCTGTCTCATGTCATGGATGCATCAATGGAAGATCTAGCTCGTTGCCCGGGCATAGTACCTGGGTTTGAATCGAAATTGATGGCTATGTGGGGGTTGAATGTGGTGGATTGTGCGGCGGCGGTGGCGGCGGCGGTGTCTCGAGCTAATTTGAGGCGGTGGAGCATGGAGATGAGGAGGAGGACGGCGAGGAGGACGGCGATGAAGATGATGGAGGCGATGATGATGAGGAAGGAATTGGAGGTGAGAAGAGCATTGTGGGCATGGATGTGGTGGTTTGGTGGTGGCGGTGTTGAATTGTGA

Protein sequence

MVRLILFCSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIVPGFESKLMAMWGLNVVDCAAAVAAAVSRANLRRWSMEMRRRTARRTAMKMMEAMMMRKELEVRRALWAWMWWFGGGGVEL
Homology
[Close]
BLAST of Cp4.1LG18g00750 vs. ExPASy Swiss-Prot
Match: Q9MA98 (DNA excision repair protein ERCC-1 OS=Arabidopsis thaliana OX=3702 GN=ERCC1 PE=2 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 4.2e-68
Identity = 123/139 (88.49%), Postives = 132/139 (94.96%), Query Frame = 0 

Query: 6   LFCSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC 65
           L+ SLRYHLLHPDYLY+RIRELQKNFKL VVLCHVDVED VKPLLEVTKTALLHDCTLLC
Sbjct: 164 LYLSLRYHLLHPDYLYFRIRELQKNFKLSVVLCHVDVEDTVKPLLEVTKTALLHDCTLLC 223

Query: 66  AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG 125
           AWS+ EC RYLETIKVYENKPADLIQGQMDTDYLSRL H LTS+RHVNK+DVVTLG+TFG
Sbjct: 224 AWSMTECARYLETIKVYENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFG 283

Query: 126 SLSHVMDASMEDLARCPGI 145
           SL+H++DASMEDLARCPGI
Sbjct: 284 SLAHIIDASMEDLARCPGI 302

[Close]
BLAST of Cp4.1LG18g00750 vs. ExPASy Swiss-Prot
Match: P07992 (DNA excision repair protein ERCC-1 OS=Homo sapiens OX=9606 GN=ERCC1 PE=1 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.9e-39
Identity = 82/141 (58.16%), Postives = 104/141 (73.76%), Query Frame = 0 

Query: 6   LFCSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC 65
           LF SLRYH LHPDY++ R++ L KNF LRV+L  VDV+D  + L E+ K  +L DCTL+ 
Sbjct: 139 LFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLIL 198

Query: 66  AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG 125
           AWS EE GRYLET K YE KPADL+  +++ D++SR+T  LT+V+ VNKTD  TL TTFG
Sbjct: 199 AWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFG 258

Query: 126 SLSHVMDASMEDLARCPGIVP 147
           SL  ++ AS EDLA CPG+ P
Sbjct: 259 SLEQLIAASREDLALCPGLGP 279

[Close]
BLAST of Cp4.1LG18g00750 vs. ExPASy Swiss-Prot
Match: P07903 (DNA excision repair protein ERCC-1 OS=Mus musculus OX=10090 GN=Ercc1 PE=2 SV=2)

HSP 1 Score: 161.4 bits (407), Expect = 1.2e-38
Identity = 81/141 (57.45%), Postives = 101/141 (71.63%), Query Frame = 0 

Query: 6   LFCSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC 65
           LF SLRYH LHPDY++ R++ L KNF LRV+L  VDV+D  + L E+ K  +L DCTL+ 
Sbjct: 139 LFLSLRYHNLHPDYIHERLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLVL 198

Query: 66  AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG 125
           AWS EE GRYLET K YE KPADL+  +++ ++LSR T  LT+V+ VNKTD  TL  TFG
Sbjct: 199 AWSAEEAGRYLETYKAYEQKPADLLMEKLEQNFLSRATECLTTVKSVNKTDSQTLLATFG 258

Query: 126 SLSHVMDASMEDLARCPGIVP 147
           SL  +  AS EDLA CPG+ P
Sbjct: 259 SLEQLFTASREDLALCPGLGP 279

[Close]
BLAST of Cp4.1LG18g00750 vs. ExPASy Swiss-Prot
Match: Q1LZ75 (DNA excision repair protein ERCC-1 OS=Bos taurus OX=9913 GN=ERCC1 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.1e-38
Identity = 79/141 (56.03%), Postives = 104/141 (73.76%), Query Frame = 0 

Query: 6   LFCSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC 65
           LF SLRYH LHPDY++ R++ L K++ LRV+L  VDV+D  + L E+ K  +L DCTL+ 
Sbjct: 135 LFLSLRYHNLHPDYIHQRLQSLGKSYALRVLLVQVDVKDPQQALKELAKMCILADCTLIL 194

Query: 66  AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG 125
           AWS EE GRYLET K YE KPADL+  +++ D++SR+T  LT+V+ VNKTD  TL TTFG
Sbjct: 195 AWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFG 254

Query: 126 SLSHVMDASMEDLARCPGIVP 147
           SL  ++ AS EDL+ CPG+ P
Sbjct: 255 SLEQLIAASREDLSLCPGLGP 275

[Close]
BLAST of Cp4.1LG18g00750 vs. ExPASy Swiss-Prot
Match: Q06182 (Mating-type switching protein swi10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=swi10 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.3e-28
Identity = 65/141 (46.10%), Postives = 94/141 (66.67%), Query Frame = 0 

Query: 6   LFCSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC 65
           LF SL+YH LHP+Y+Y RI +L K++ LR++L  VDVE+    + E+ KT++++  TL+ 
Sbjct: 81  LFLSLKYHHLHPEYIYSRISKLGKSYNLRILLILVDVENHQASIQELVKTSIVNQYTLIL 140

Query: 66  AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG 125
           AWS EE  RYLET K YEN    LI  +  TDYLS++   LTS+R +NK+D ++L + FG
Sbjct: 141 AWSSEEAARYLETYKAYENMSPALIMEKPSTDYLSQVQSFLTSIRGINKSDSLSLLSKFG 200

Query: 126 SLSHVMDASMEDLARCPGIVP 147
           SL   + AS ++L +  G  P
Sbjct: 201 SLERALVASRDELEQLEGWGP 221

[Close]
BLAST of Cp4.1LG18g00750 vs. NCBI nr
Match: XP_038884594.1 (DNA excision repair protein ERCC-1 isoform X2 [Benincasa hispida])

HSP 1 Score: 277 bits (708), Expect = 9.52e-90
Identity = 136/139 (97.84%), Postives = 138/139 (99.28%), Query Frame = 0 

Query: 6   LFCSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC 65
           L+ SLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC
Sbjct: 150 LYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC 209

Query: 66  AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG 125
           AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG
Sbjct: 210 AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG 269

Query: 126 SLSHVMDASMEDLARCPGI 144
           SLSH+MDASMEDLARCPGI
Sbjct: 270 SLSHIMDASMEDLARCPGI 288

[Close]
BLAST of Cp4.1LG18g00750 vs. NCBI nr
Match: XP_011656461.1 (DNA excision repair protein ERCC-1 isoform X3 [Cucumis sativus] >KGN45866.2 hypothetical protein Csa_005211 [Cucumis sativus])

HSP 1 Score: 275 bits (702), Expect = 4.19e-89
Identity = 134/139 (96.40%), Postives = 137/139 (98.56%), Query Frame = 0 

Query: 6   LFCSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC 65
           L+ SLRYHLLHPDYLYYRIRELQKNFKLRV+LCHVDVEDVVKPLLEVTKTALLHDCTLLC
Sbjct: 151 LYLSLRYHLLHPDYLYYRIRELQKNFKLRVILCHVDVEDVVKPLLEVTKTALLHDCTLLC 210

Query: 66  AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG 125
           AWSLEECGRYLETIKVYENKPADLIQG MDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG
Sbjct: 211 AWSLEECGRYLETIKVYENKPADLIQGHMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG 270

Query: 126 SLSHVMDASMEDLARCPGI 144
           SLSH+MDASMEDLARCPGI
Sbjct: 271 SLSHIMDASMEDLARCPGI 289

[Close]
BLAST of Cp4.1LG18g00750 vs. NCBI nr
Match: XP_023516191.1 (DNA excision repair protein ERCC-1 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 277 bits (709), Expect = 5.96e-89
Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 0 

Query: 6   LFCSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC 65
           L+ SLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC
Sbjct: 150 LYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC 209

Query: 66  AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG 125
           AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG
Sbjct: 210 AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG 269

Query: 126 SLSHVMDASMEDLARCPGI 144
           SLSHVMDASMEDLARCPGI
Sbjct: 270 SLSHVMDASMEDLARCPGI 288

[Close]
BLAST of Cp4.1LG18g00750 vs. NCBI nr
Match: XP_022968743.1 (DNA excision repair protein ERCC-1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 277 bits (709), Expect = 6.15e-89
Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 0 

Query: 6   LFCSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC 65
           L+ SLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC
Sbjct: 151 LYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC 210

Query: 66  AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG 125
           AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG
Sbjct: 211 AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG 270

Query: 126 SLSHVMDASMEDLARCPGI 144
           SLSHVMDASMEDLARCPGI
Sbjct: 271 SLSHVMDASMEDLARCPGI 289

[Close]
BLAST of Cp4.1LG18g00750 vs. NCBI nr
Match: XP_011656460.1 (DNA excision repair protein ERCC-1 isoform X2 [Cucumis sativus])

HSP 1 Score: 275 bits (702), Expect = 6.80e-89
Identity = 134/139 (96.40%), Postives = 137/139 (98.56%), Query Frame = 0 

Query: 6   LFCSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC 65
           L+ SLRYHLLHPDYLYYRIRELQKNFKLRV+LCHVDVEDVVKPLLEVTKTALLHDCTLLC
Sbjct: 151 LYLSLRYHLLHPDYLYYRIRELQKNFKLRVILCHVDVEDVVKPLLEVTKTALLHDCTLLC 210

Query: 66  AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG 125
           AWSLEECGRYLETIKVYENKPADLIQG MDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG
Sbjct: 211 AWSLEECGRYLETIKVYENKPADLIQGHMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG 270

Query: 126 SLSHVMDASMEDLARCPGI 144
           SLSH+MDASMEDLARCPGI
Sbjct: 271 SLSHIMDASMEDLARCPGI 289

[Close]
BLAST of Cp4.1LG18g00750 vs. ExPASy TrEMBL
Match: A0A6J1HYZ8 (DNA excision repair protein ERCC-1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467887 PE=3 SV=1)

HSP 1 Score: 277 bits (709), Expect = 2.98e-89
Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 0 

Query: 6   LFCSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC 65
           L+ SLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC
Sbjct: 151 LYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC 210

Query: 66  AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG 125
           AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG
Sbjct: 211 AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG 270

Query: 126 SLSHVMDASMEDLARCPGI 144
           SLSHVMDASMEDLARCPGI
Sbjct: 271 SLSHVMDASMEDLARCPGI 289

[Close]
BLAST of Cp4.1LG18g00750 vs. ExPASy TrEMBL
Match: A0A1S3CIE0 (DNA excision repair protein ERCC-1 OS=Cucumis melo OX=3656 GN=LOC103501314 PE=3 SV=1)

HSP 1 Score: 277 bits (708), Expect = 4.48e-89
Identity = 136/139 (97.84%), Postives = 138/139 (99.28%), Query Frame = 0 

Query: 6   LFCSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC 65
           L+ SLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC
Sbjct: 150 LYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC 209

Query: 66  AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG 125
           AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG
Sbjct: 210 AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG 269

Query: 126 SLSHVMDASMEDLARCPGI 144
           SLSH+MDASMEDLARCPGI
Sbjct: 270 SLSHIMDASMEDLARCPGI 288

[Close]
BLAST of Cp4.1LG18g00750 vs. ExPASy TrEMBL
Match: A0A6J1HED7 (DNA excision repair protein ERCC-1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462101 PE=3 SV=1)

HSP 1 Score: 277 bits (709), Expect = 1.10e-88
Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 0 

Query: 6   LFCSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC 65
           L+ SLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC
Sbjct: 195 LYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC 254

Query: 66  AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG 125
           AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG
Sbjct: 255 AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG 314

Query: 126 SLSHVMDASMEDLARCPGI 144
           SLSHVMDASMEDLARCPGI
Sbjct: 315 SLSHVMDASMEDLARCPGI 333

[Close]
BLAST of Cp4.1LG18g00750 vs. ExPASy TrEMBL
Match: A0A5D3BSF5 (DNA excision repair protein ERCC-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00400 PE=3 SV=1)

HSP 1 Score: 277 bits (708), Expect = 1.75e-88
Identity = 136/139 (97.84%), Postives = 138/139 (99.28%), Query Frame = 0 

Query: 6   LFCSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC 65
           L+ SLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC
Sbjct: 150 LYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC 209

Query: 66  AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG 125
           AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG
Sbjct: 210 AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG 269

Query: 126 SLSHVMDASMEDLARCPGI 144
           SLSH+MDASMEDLARCPGI
Sbjct: 270 SLSHIMDASMEDLARCPGI 288

[Close]
BLAST of Cp4.1LG18g00750 vs. ExPASy TrEMBL
Match: A0A5A7T0A2 (DNA excision repair protein ERCC-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G00490 PE=3 SV=1)

HSP 1 Score: 277 bits (708), Expect = 1.80e-88
Identity = 136/139 (97.84%), Postives = 138/139 (99.28%), Query Frame = 0 

Query: 6   LFCSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC 65
           L+ SLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC
Sbjct: 150 LYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC 209

Query: 66  AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG 125
           AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG
Sbjct: 210 AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG 269

Query: 126 SLSHVMDASMEDLARCPGI 144
           SLSH+MDASMEDLARCPGI
Sbjct: 270 SLSHIMDASMEDLARCPGI 288

[Close]
BLAST of Cp4.1LG18g00750 vs. TAIR 10
Match: AT3G05210.1 (nucleotide repair protein, putative )

HSP 1 Score: 259.2 bits (661), Expect = 3.0e-69
Identity = 123/139 (88.49%), Postives = 132/139 (94.96%), Query Frame = 0 

Query: 6   LFCSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC 65
           L+ SLRYHLLHPDYLY+RIRELQKNFKL VVLCHVDVED VKPLLEVTKTALLHDCTLLC
Sbjct: 164 LYLSLRYHLLHPDYLYFRIRELQKNFKLSVVLCHVDVEDTVKPLLEVTKTALLHDCTLLC 223

Query: 66  AWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFG 125
           AWS+ EC RYLETIKVYENKPADLIQGQMDTDYLSRL H LTS+RHVNK+DVVTLG+TFG
Sbjct: 224 AWSMTECARYLETIKVYENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFG 283

Query: 126 SLSHVMDASMEDLARCPGI 145
           SL+H++DASMEDLARCPGI
Sbjct: 284 SLAHIIDASMEDLARCPGI 302

The following BLAST results are available for this feature:
BLAST of Cp4.1LG18g00750 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9MA984.2e-6888.49DNA excision repair protein ERCC-1 OS=Arabidopsis thaliana OX=3702 GN=ERCC1 PE=2... [more]
P079921.9e-3958.16DNA excision repair protein ERCC-1 OS=Homo sapiens OX=9606 GN=ERCC1 PE=1 SV=1[more]
P079031.2e-3857.45DNA excision repair protein ERCC-1 OS=Mus musculus OX=10090 GN=Ercc1 PE=2 SV=2[more]
Q1LZ752.1e-3856.03DNA excision repair protein ERCC-1 OS=Bos taurus OX=9913 GN=ERCC1 PE=2 SV=1[more]
Q061827.3e-2846.10Mating-type switching protein swi10 OS=Schizosaccharomyces pombe (strain 972 / A... [more]
BLAST of Cp4.1LG18g00750 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038884594.19.52e-9097.84DNA excision repair protein ERCC-1 isoform X2 [Benincasa hispida][more]
XP_011656461.14.19e-8996.40DNA excision repair protein ERCC-1 isoform X3 [Cucumis sativus] >KGN45866.2 hypo... [more]
XP_023516191.15.96e-8998.56DNA excision repair protein ERCC-1 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022968743.16.15e-8998.56DNA excision repair protein ERCC-1 isoform X1 [Cucurbita maxima][more]
XP_011656460.16.80e-8996.40DNA excision repair protein ERCC-1 isoform X2 [Cucumis sativus][more]
BLAST of Cp4.1LG18g00750 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HYZ82.98e-8998.56DNA excision repair protein ERCC-1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A1S3CIE04.48e-8997.84DNA excision repair protein ERCC-1 OS=Cucumis melo OX=3656 GN=LOC103501314 PE=3 ... [more]
A0A6J1HED71.10e-8898.56DNA excision repair protein ERCC-1 isoform X1 OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A5D3BSF51.75e-8897.84DNA excision repair protein ERCC-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A5A7T0A21.80e-8897.84DNA excision repair protein ERCC-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C... [more]
BLAST of Cp4.1LG18g00750 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G05210.13.0e-6988.49nucleotide repair protein, putative [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004579ERCC1/RAD10/SWI10 familyTIGRFAMTIGR00597TIGR00597coord: 5..77
e-value: 2.2E-23
score: 80.3
IPR004579ERCC1/RAD10/SWI10 familyPFAMPF03834Rad10coord: 4..80
e-value: 1.4E-26
score: 92.7
IPR004579ERCC1/RAD10/SWI10 familyPANTHERPTHR12749EXCISION REPAIR CROSS-COMPLEMENTING 1 ERCC1coord: 5..145
NoneNo IPR availableGENE3D1.10.150.20coord: 81..156
e-value: 2.8E-22
score: 80.2
NoneNo IPR availableGENE3D3.40.50.10130coord: 2..80
e-value: 4.9E-29
score: 102.4
IPR010994RuvA domain 2-likeSUPERFAMILY47781RuvA domain 2-likecoord: 89..153
IPR011335Restriction endonuclease type II-likeSUPERFAMILY52980Restriction endonuclease-likecoord: 4..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g00750.1Cp4.1LG18g00750.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000710 meiotic mismatch repair
biological_process GO:0006312 mitotic recombination
biological_process GO:0006296 nucleotide-excision repair, DNA incision, 5'-to lesion
biological_process GO:0070914 UV-damage excision repair
biological_process GO:0006281 DNA repair
cellular_component GO:0070522 ERCC4-ERCC1 complex
cellular_component GO:0000110 nucleotide-excision repair factor 1 complex
cellular_component GO:0005634 nucleus
molecular_function GO:0003684 damaged DNA binding
molecular_function GO:0004518 nuclease activity
molecular_function GO:0003697 single-stranded DNA binding