Cp4.1LG17g11350 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g11350
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	EPIDERMAL PATTERNING FACTOR-like protein 9
Location	Cp4.1LG17: 8574692 .. 8575581 (-)
RNA-Seq Expression	Cp4.1LG17g11350
Synteny	Cp4.1LG17g11350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGTATTAATACTTTTTGAGTTCCATTCTCCCATTCTACAATTGCAGCGATTGGTTTCTTATCCTCTCGTTTCCAATGGCGAAAGCTGCGAAACCACTTCTTCTTCTCCTCCTTCTAGCCCTAATTCTCTGCTCTCTCTGCTCAACAATGGCGCTAAAAGGTTTCTCTCTCTCTTTTTCTCTCTCTCGGTTTACGTTCTTCGTCGCTTGATTTACTTTATTCATCTTCTCTCCGTATCTTTTTTCGCGTTCAGGACGATTCTCAACAGAGGACGAACTTTTCGCTAAACCTCTGCCTCAATTCCGTTCCGTACAAACAACAATCGCGCCCGAGGTTAGTTGTTCGTACTATCCGGACGACAAATCTTTTTCGATTTTTATCATTTAGGAATTCGCGTCTCGTTTCTTGATCTCCGTTTCTTGTTTCTGATCTCTTGAATGTACTTTTAAAGTAATCGTTAAATGCTCGAGACTCGAAGTATAATGTGTTTATTTTTTATGGAAATTTTAAAAAAATTCAGATGAGAAATTCAAGAAGGTTGATGATTGGTTCAACAGCACCGATATGTACTTATAATGAATGTAGAGGATGCAAATACAAGTGCAGAGCCGAACAAGTGCCAGTTGAAGGCAATGACCCGATCAATAGTGCTTATCACTATAGATGTGTTTGTCATAGGTAATTTCATTTTAATCTCCCCAAATTTTTGTACCAATTTTCTTAGTTTTTTGTTCTTTCCAAGACAATTTGAGAGGTAGATTTGAGTCTACCTTCCTCGAGTCTATTTTGTTTGTGTTATATAAATTTTCGCGTCCGTTTTGTTGTAATATTTTTCTTTGGTTTTATTGATAATGGTTTAAATCAAGAGTTTGTAAGGATATCTAAACTGT

mRNA sequence

AAGTATTAATACTTTTTGAGTTCCATTCTCCCATTCTACAATTGCAGCGATTGGTTTCTTATCCTCTCGTTTCCAATGGCGAAAGCTGCGAAACCACTTCTTCTTCTCCTCCTTCTAGCCCTAATTCTCTGCTCTCTCTGCTCAACAATGGCGCTAAAAGGACGATTCTCAACAGAGGACGAACTTTTCGCTAAACCTCTGCCTCAATTCCGTTCCGTACAAACAACAATCGCGCCCGAGATGAGAAATTCAAGAAGGTTGATGATTGGTTCAACAGCACCGATATGTACTTATAATGAATGTAGAGGATGCAAATACAAGTGCAGAGCCGAACAAGTGCCAGTTGAAGGCAATGACCCGATCAATAGTGCTTATCACTATAGATGTGTTTGTCATAGGTAATTTCATTTTAATCTCCCCAAATTTTTGTACCAATTTTCTTAGTTTTTTGTTCTTTCCAAGACAATTTGAGAGGTAGATTTGAGTCTACCTTCCTCGAGTCTATTTTGTTTGTGTTATATAAATTTTCGCGTCCGTTTTGTTGTAATATTTTTCTTTGGTTTTATTGATAATGGTTTAAATCAAGAGTTTGTAAGGATATCTAAACTGT

Coding sequence (CDS)

ATGGCGAAAGCTGCGAAACCACTTCTTCTTCTCCTCCTTCTAGCCCTAATTCTCTGCTCTCTCTGCTCAACAATGGCGCTAAAAGGACGATTCTCAACAGAGGACGAACTTTTCGCTAAACCTCTGCCTCAATTCCGTTCCGTACAAACAACAATCGCGCCCGAGATGAGAAATTCAAGAAGGTTGATGATTGGTTCAACAGCACCGATATGTACTTATAATGAATGTAGAGGATGCAAATACAAGTGCAGAGCCGAACAAGTGCCAGTTGAAGGCAATGACCCGATCAATAGTGCTTATCACTATAGATGTGTTTGTCATAGGTAA

Protein sequence

MAKAAKPLLLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRNSRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR

Homology

[Close]

BLAST of Cp4.1LG17g11350 vs. ExPASy Swiss-Prot
Match: Q9SV72 (EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Arabidopsis thaliana OX=3702 GN=EPFL9 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.0e-24
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 46  RSVQTTIA--PE---MRNSRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAY 105
           RS++ T++  P+   + + RR MIGSTAP CTYNECRGC+YKCRAEQVPVEGNDPINSAY
Sbjct: 35  RSIENTVSLLPQVHLLNSRRRHMIGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAY 94

Query: 106 HYRCVCHR 109
           HYRCVCHR
Sbjct: 95  HYRCVCHR 102

[Close]

BLAST of Cp4.1LG17g11350 vs. NCBI nr
Match: XP_023514879.1 (EPIDERMAL PATTERNING FACTOR-like protein 9 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218 bits (554), Expect = 2.48e-71
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAKAAKPLLLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRNSR 60
           MAKAAKPLLLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRNSR
Sbjct: 1   MAKAAKPLLLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRNSR 60

Query: 61  RLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 108
           RLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  RLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 108

[Close]

BLAST of Cp4.1LG17g11350 vs. NCBI nr
Match: KAG6593029.1 (EPIDERMAL PATTERNING FACTOR-like protein 9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213 bits (542), Expect = 1.73e-69
Identity = 108/109 (99.08%), Postives = 108/109 (99.08%), Query Frame = 0


Query: 1   MAKAAKPLLLLLLL-ALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRNS 60
           MAKAAKPLLLLLLL ALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRNS
Sbjct: 1   MAKAAKPLLLLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRNS 60

Query: 61  RRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 108
           RRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  RRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 109

[Close]

BLAST of Cp4.1LG17g11350 vs. NCBI nr
Match: XP_022959844.1 (EPIDERMAL PATTERNING FACTOR-like protein 9 [Cucurbita moschata])

HSP 1 Score: 213 bits (541), Expect = 2.54e-69
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 1   MAKAAKPLL--LLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRN 60
           MAKAAKPLL  LLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRN
Sbjct: 1   MAKAAKPLLRLLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRN 60

Query: 61  SRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 108
           SRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  SRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 110

[Close]

BLAST of Cp4.1LG17g11350 vs. NCBI nr
Match: XP_023004190.1 (EPIDERMAL PATTERNING FACTOR-like protein 9 [Cucurbita maxima])

HSP 1 Score: 212 bits (540), Expect = 3.39e-69
Identity = 105/108 (97.22%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MAKAAKPLLLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRNSR 60
           MAKAAKPLLLLLLLALILCSLCSTMALKGRFSTED++FAK LPQFRSVQTTIAPEMRNSR
Sbjct: 1   MAKAAKPLLLLLLLALILCSLCSTMALKGRFSTEDDVFAKSLPQFRSVQTTIAPEMRNSR 60

Query: 61  RLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 108
           RLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  RLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 108

[Close]

BLAST of Cp4.1LG17g11350 vs. NCBI nr
Match: XP_038899071.1 (EPIDERMAL PATTERNING FACTOR-like protein 9 [Benincasa hispida])

HSP 1 Score: 148 bits (374), Expect = 6.75e-44
Identity = 85/114 (74.56%), Postives = 91/114 (79.82%), Query Frame = 0


Query: 1   MAKAAKPL-LLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPE---- 60
           MAKAAKP+ +LLLLL LI+  L STMA++G FST         PQF S+Q TIA E    
Sbjct: 1   MAKAAKPVSVLLLLLTLIMTFLFSTMAVQG-FSTRHP------PQFFSLQATIASEGKNE 60

Query: 61  -MRNSRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 108
            MRNSRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  KMRNSRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 107

[Close]

BLAST of Cp4.1LG17g11350 vs. ExPASy TrEMBL
Match: A0A6J1H996 (EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Cucurbita moschata OX=3662 GN=LOC111460784 PE=4 SV=1)

HSP 1 Score: 213 bits (541), Expect = 1.23e-69
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 1   MAKAAKPLL--LLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRN 60
           MAKAAKPLL  LLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRN
Sbjct: 1   MAKAAKPLLRLLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRN 60

Query: 61  SRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 108
           SRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  SRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 110

[Close]

BLAST of Cp4.1LG17g11350 vs. ExPASy TrEMBL
Match: A0A6J1KTW3 (EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Cucurbita maxima OX=3661 GN=LOC111497591 PE=4 SV=1)

HSP 1 Score: 212 bits (540), Expect = 1.64e-69
Identity = 105/108 (97.22%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MAKAAKPLLLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRNSR 60
           MAKAAKPLLLLLLLALILCSLCSTMALKGRFSTED++FAK LPQFRSVQTTIAPEMRNSR
Sbjct: 1   MAKAAKPLLLLLLLALILCSLCSTMALKGRFSTEDDVFAKSLPQFRSVQTTIAPEMRNSR 60

Query: 61  RLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 108
           RLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  RLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 108

[Close]

BLAST of Cp4.1LG17g11350 vs. ExPASy TrEMBL
Match: A0A6J1DR94 (uncharacterized protein LOC111023601 OS=Momordica charantia OX=3673 GN=LOC111023601 PE=4 SV=1)

HSP 1 Score: 130 bits (326), Expect = 8.24e-37
Identity = 80/117 (68.38%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 1   MAKAAKPL-LLLLLLALILCSLCSTMALKGRFSTEDELF-AKPLP-QFRSVQTTIAPE-- 60
           MAKAAKP  +LLLLL LI+      +A++G  + EDEL  AK LP QF SV T       
Sbjct: 1   MAKAAKPASVLLLLLTLII-----VVAVQGFTTGEDELLLAKALPPQFSSVSTMANQGKN 60

Query: 61  --MRNSR--RLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 108
             +RNSR  RLMIGSTAP CTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  KMLRNSRTRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 112

[Close]

BLAST of Cp4.1LG17g11350 vs. ExPASy TrEMBL
Match: A0A0A0KA17 (EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Cucumis sativus OX=3659 GN=Csa_7G368090 PE=4 SV=1)

HSP 1 Score: 129 bits (323), Expect = 9.95e-37
Identity = 64/90 (71.11%), Postives = 71/90 (78.89%), Query Frame = 0


Query: 25  MALKGRFSTEDELFAKPLPQFRSVQTTIAP------EMRNSRRLMIGSTAPICTYNECRG 84
           MA++G FST D    +P+PQF S+Q TI P       +R  RR+MIGSTAP CTYNECRG
Sbjct: 1   MAVQG-FSTRD----RPVPQFSSLQPTILPLEGRKERLRKWRRVMIGSTAPTCTYNECRG 60

Query: 85  CKYKCRAEQVPVEGNDPINSAYHYRCVCHR 108
           CKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  CKYKCRAEQVPVEGNDPINSAYHYRCVCHR 85

[Close]

BLAST of Cp4.1LG17g11350 vs. ExPASy TrEMBL
Match: A0A0B2RBN1 (EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Glycine soja OX=3848 GN=D0Y65_048552 PE=4 SV=1)

HSP 1 Score: 118 bits (296), Expect = 2.32e-32
Identity = 60/91 (65.93%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 24  TMALKGRFS----TEDELFAKPLPQFRSVQTTI--APEMRNSRRLMIGSTAPICTYNECR 83
           T+ L  +F+    TE+ +     PQ  S    +  A +MRNSRRLMIGSTAP CTYNECR
Sbjct: 15  TLILAAKFTQGIRTEELVSQSSHPQRESSLEDVNEAWKMRNSRRLMIGSTAPTCTYNECR 74

Query: 84  GCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 108
           GCKYKCRAEQVPVEGNDPINS YHYRCVCHR
Sbjct: 75  GCKYKCRAEQVPVEGNDPINSPYHYRCVCHR 105

[Close]

BLAST of Cp4.1LG17g11350 vs. TAIR 10
Match: AT4G12970.1 (stomagen )

HSP 1 Score: 112.1 bits (279), Expect = 2.9e-25
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 46  RSVQTTIA--PE---MRNSRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAY 105
           RS++ T++  P+   + + RR MIGSTAP CTYNECRGC+YKCRAEQVPVEGNDPINSAY
Sbjct: 35  RSIENTVSLLPQVHLLNSRRRHMIGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAY 94

Query: 106 HYRCVCHR 109
           HYRCVCHR
Sbjct: 95  HYRCVCHR 102

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g11350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SV72	4.0e-24	73.53	EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]

BLAST of Cp4.1LG17g11350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023514879.1	2.48e-71	100.00	EPIDERMAL PATTERNING FACTOR-like protein 9 [Cucurbita pepo subsp. pepo]	[more]
KAG6593029.1	1.73e-69	99.08	EPIDERMAL PATTERNING FACTOR-like protein 9, partial [Cucurbita argyrosperma subs...	[more]
XP_022959844.1	2.54e-69	98.18	EPIDERMAL PATTERNING FACTOR-like protein 9 [Cucurbita moschata]	[more]
XP_023004190.1	3.39e-69	97.22	EPIDERMAL PATTERNING FACTOR-like protein 9 [Cucurbita maxima]	[more]
XP_038899071.1	6.75e-44	74.56	EPIDERMAL PATTERNING FACTOR-like protein 9 [Benincasa hispida]	[more]

BLAST of Cp4.1LG17g11350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H996	1.23e-69	98.18	EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1KTW3	1.64e-69	97.22	EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1DR94	8.24e-37	68.38	uncharacterized protein LOC111023601 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A0A0KA17	9.95e-37	71.11	EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Cucumis sativus OX=3659 GN=Csa_7G3...	[more]
A0A0B2RBN1	2.32e-32	65.93	EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Glycine soja OX=3848 GN=D0Y65_0485...	[more]

BLAST of Cp4.1LG17g11350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G12970.1	2.9e-25	73.53	stomagen	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038572	Stomagen, C-terminal domain superfamily	GENE3D	2.20.25.390	Stomagen	coord: 64..108 e-value: 5.0E-31 score: 108.3
IPR044858	Stomagen, C-terminal domain	PFAM	PF16851	Stomagen	coord: 58..107 e-value: 1.4E-33 score: 114.6
IPR031753	Stomagen	PANTHER	PTHR37239	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 9	coord: 5..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g11350.1	Cp4.1LG17g11350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:2000123	positive regulation of stomatal complex development