Cp4.1LG17g11000 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g11000
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	spindle and kinetochore-associated protein 1 homolog
Location	Cp4.1LG17: 8398039 .. 8400542 (+)
RNA-Seq Expression	Cp4.1LG17g11000
Synteny	Cp4.1LG17g11000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATATGAAAGGAAGGTTGACAGTTGACAAGGTCAATGCTGCTATTAATGACATGGTAACATATGCTGAAGCAAATGCTCAGCTTATTGTCGTCCCAAAGAAGAAGGTTCGTGTTAAATTCTCTCTCTGACTTAACAAGCATATTGATAACCACCACACCACTTATATGCTGACAATGGGTAATTTTTGTGAAGCTGGCTGAGAACCAATGGGAAAAGGCTCTGGTAAGTTTACTTGCAATCTTTCCACATCCGCATCTCGTCTTCTTCCTTTCGCTTCCTTTCTGCATTGATGCTTGCAAAACTTAAGATGTAGCGATGTAGGTTCTAGGCACACTAAAGATTATTACATAATATATTCATTAATATTAATGCATTATATATTGTGAAAACGTCATGTAGAATCATGTGGGTGTTCTGATTGTGTTCCTAGTAGATGCTACACAGAGAATTATTTTTCTTGCCCATTTTACTTGAGATCTTAGGAACCCCTTTCTATCTAATTGACAAAACTGGATAGAGGAAAAAAATGTGATTTTGGATGGTTGATCGTCTGCTTCCGGTCCCAGTTGTAGGCGAAGTGGCAATGGTGGAGGTAGGCAACGAAGAGCACTGTCAAGAGTTGCTTGTAAAATAATAGAGTTAGACAATAGTATGGTGTTGTCTAATTACTAGATGGTGCTTTGCAAGTGGTTGGATTAGGTGAATACGGTGTAGCTAAGTATCGTGGTAGAGTGGTAGCATGCAAATGGTCACCTCGGGCCATCCCACCTTTATCCCTTCGAGCGTTGTGCTAGATTAAGGATGATCTCATTGCATTGGGTGGCCTCGGGCTTATGTTGGACTAACTTGTGGCTAGGGTACCAATTGGTCAACCCATACAACTTTATGCTCAACCTACTCTATTTTGCTCCTACTAGACCTAGTTGGGCTAGAGTCTACAAATTATTATTTTATTGCAAAATTTACCCAAAGCAATTGCTCTTTGCTAGGAGTGTCGGTGGGTGGCGCATGAGGACGAGAAGAGCCTCTCATCCCTGCAAAAGGTCCTCCAAAAGACTCACCTAATCCTTCGTCCTCATACGCCACCCACCGTCAAATTGGTGATTCTCTGAACAGTGCACGCTTCATTCTTCGTTCTATCTGTTTCCGTAGACTGCTCACAAAAAGCTATCAAACAACTTGACACATTGGCATGTTTCATTCTGTCTCTGGGTAAAGGGTACGAAAGCAGAGGTAAACATACCAAAATTTTGTCAGATTTTAGACTCTGACTGAATAAGAGTGTCGAAGCGTAGAGCTCTTTTACTTTACCAGCAACCCTCTACCAGACTCTCTATAGACCTTCAGCCTTGTCACCTTACCTTTGATCGGATTAATGTGCACGCGATGAACCACTTGTTGTTTGTCCAAAATCATGCAACAGCATCCCTTACCCCACTCCTAATGGCAAAAGAATCCCCAACATTGCCCCCATGCTTGCAAATTCTAGAGCAGGGTGGGGTTTGGGTCTTGTGGGGAATTTGTTCCTAATTTGACGGGGAATTCTCGTGCGGTATCTCCATGGGGACAAATCCCGTTGGAACCCGATGAGTGCCAACAAGTGGTGCAACAAATTGATGAGAGCAAACGATGTTTGATGAGTGCAGATGCACCAATATGTGATGGAAAAAAGGGTAGGTGCAGCGAGTAAGTGACAGTAGTGGTGCTTGGTGAGTTGGCGAGAGCAAACAATGTTTGGAGAGTAAGCAAACTGGCTACGATAGGTGGCAGCTGGTAGTGATAACCTTGTTAGCCCTCAAGGTCCTCCTGGGCAAGGGCAAATGGTGGAACCAAAGCTCAAAAAAGAAAAAAAGAAGTTAGTCAGTGAAGGAGGAGGAGAAGAAAATGATGATGGGGAAGTTGAAACTATCTATAACAAATAAAATTATGAACATGGGCTATAAAAAGTGCCTGAATTAATACAAGTAAAGACTAACATTGATCTTGAACACTGTCAAATTGGTGATTCCGATGGGTAACCACAGGGAGTCAGGGATCTGAACCCATGTTTTGTTTTTATTTTTTTTTAATCTTATCAAGATGTCATGTTTGTATTTCCGGTAAATGCAGGAGCTAAGAGATATTGCAACAACCGAAGCAGTGAAAGGAAAATATTTCTTTCTTGAAACTGACATGAGAGGACCTTCATTGAAACTTGACAACACTGGAAAAGCCATACTAACTGTAAGTTTGTCATATATAATTTGCTCAATCAATAAGCAATCATAGTTATGTTGGGAGAGAATACCATTAAGCAAATAATAGTGTTAAGTTGGGAGATAATACCAAAACTTCATTCATCTAGTCAGTACTTTAGTGTATGTTATCATCAAATTCGAAGCTTTTTTCATACCATAGTTCATATAGTACTGTTGATTGATTCTTGAAAAAACGGTCAAATTTTGTGCACCACAGGTCCTTCGACATCTTGGACGCATAAGCGAGACTCGTATTGGACATCAA

mRNA sequence

ATATATGAAAGGAAGGTTGACAGTTGACAAGGTCAATGCTGCTATTAATGACATGGTAACATATGCTGAAGCAAATGCTCAGCTTATTGTCGTCCCAAAGAAGAAGGAGCTAAGAGATATTGCAACAACCGAAGCAGTGAAAGGAAAATATTTCTTTCTTGAAACTGACATGAGAGGACCTTCATTGAAACTTGACAACACTGGAAAAGCCATACTAACTGTCCTTCGACATCTTGGACGCATAAGCGAGACTCGTATTGGACATCAA

Coding sequence (CDS)

ATGAAAGGAAGGTTGACAGTTGACAAGGTCAATGCTGCTATTAATGACATGGTAACATATGCTGAAGCAAATGCTCAGCTTATTGTCGTCCCAAAGAAGAAGGAGCTAAGAGATATTGCAACAACCGAAGCAGTGAAAGGAAAATATTTCTTTCTTGAAACTGACATGAGAGGACCTTCATTGAAACTTGACAACACTGGAAAAGCCATACTAACTGTCCTTCGACATCTTGGACGCATAAGCGAGACTCGTATTGGACATCAA

Protein sequence

MKGRLTVDKVNAAINDMVTYAEANAQLIVVPKKKELRDIATTEAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQ

Homology

[Close]

BLAST of Cp4.1LG17g11000 vs. ExPASy Swiss-Prot
Match: Q9LZZ7 (Spindle and kinetochore-associated protein 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At3g60660 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.6e-31
Identity = 70/96 (72.92%), Postives = 79/96 (82.29%), Query Frame = 0


Query: 1   MKGRLTVDKVNAAINDMVTYAEANAQLIVVPKKK----------ELRDIATTEAVKGKYF 60
           M+GRLT++KVNAAINDM +YAEANA LI   K+K          +LRDI T +AVKGK+F
Sbjct: 166 MRGRLTLEKVNAAINDMASYAEANAHLIAASKQKLAENLWEKALKLRDIVTEQAVKGKHF 225

Query: 61  FLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIG 87
           FLETDM+GPSLKLDNTGKAILTVLRHLGRISETRIG
Sbjct: 226 FLETDMKGPSLKLDNTGKAILTVLRHLGRISETRIG 261

[Close]

BLAST of Cp4.1LG17g11000 vs. ExPASy Swiss-Prot
Match: Q7XAM0 (Spindle and kinetochore-associated protein 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0484500 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-28
Identity = 62/97 (63.92%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 1   MKGRLTVDKVNAAINDMVTYAEANAQLIVVPKKK----------ELRDIATTEAVKGKYF 60
           M+GRLT++KVN AIN++ +YA+ NA L+  PKKK          ELRDIA  E+VKG++F
Sbjct: 170 MRGRLTLEKVNIAINEVASYADGNAHLVACPKKKLSEDTWEKALELRDIAARESVKGRHF 229

Query: 61  FLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGH 88
           FLETD++GP LKLD TGKAILTVLRHLGR  ETRIGH
Sbjct: 230 FLETDIKGPGLKLDTTGKAILTVLRHLGRFQETRIGH 266

[Close]

BLAST of Cp4.1LG17g11000 vs. ExPASy Swiss-Prot
Match: B8B624 (Spindle and kinetochore-associated protein 1 homolog OS=Oryza sativa subsp. indica OX=39946 GN=OsI_26011 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.4e-28
Identity = 62/97 (63.92%), Postives = 74/97 (76.29%), Query Frame = 0


Query: 1   MKGRLTVDKVNAAINDMVTYAEANAQLIVVPKKK----------ELRDIATTEAVKGKYF 60
           M+GRLT++KVN AIN++ +YA+ NA L+  PKKK           LRDIA  E+VKGK+F
Sbjct: 170 MRGRLTLEKVNIAINEVASYADGNAHLVACPKKKLSEDTWEKALVLRDIAARESVKGKHF 229

Query: 61  FLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGH 88
           FLETD++GP LKLD TGKAILTVLRHLGR  ETRIGH
Sbjct: 230 FLETDIKGPGLKLDTTGKAILTVLRHLGRFQETRIGH 266

[Close]

BLAST of Cp4.1LG17g11000 vs. ExPASy Swiss-Prot
Match: B4FGS2 (Spindle and kinetochore-associated protein 1 homolog OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 8.3e-28
Identity = 62/97 (63.92%), Postives = 74/97 (76.29%), Query Frame = 0


Query: 1   MKGRLTVDKVNAAINDMVTYAEANAQLIVVPKKK----------ELRDIATTEAVKGKYF 60
           M+GRLT++KVN AIN++ +YA+ANA L+  PKKK          ELRDIA + AVKG +F
Sbjct: 167 MRGRLTLEKVNIAINEVASYADANAHLVTCPKKKLSEDTWEKALELRDIAASGAVKGNHF 226

Query: 61  FLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGH 88
           FLE D++GP LKLDNTGKAILTVLRHLGR  E RIGH
Sbjct: 227 FLEADIKGPGLKLDNTGKAILTVLRHLGRFHEVRIGH 263

[Close]

BLAST of Cp4.1LG17g11000 vs. ExPASy Swiss-Prot
Match: Q96BD8 (Spindle and kinetochore-associated protein 1 OS=Homo sapiens OX=9606 GN=SKA1 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.8e-04
Identity = 30/96 (31.25%), Postives = 50/96 (52.08%), Query Frame = 0


Query: 1   MKGRLTVDKVNAAINDMVTYAEANAQLIVVPKK---KELRDI------ATTEAVKGKYFF 60
           MK RLT +++N  I ++     +  +++  PKK      R++        T+  KG+YF 
Sbjct: 152 MKSRLTYNQINDVIKEINKAVISKYKILHQPKKSMNSVTRNLYHRFIDEETKDTKGRYFI 211

Query: 61  LETDMRG-PSLKLDNTGKAILTVLRHLGRISETRIG 87
           +E D++   +LK D     +L +LRH  R+SE R G
Sbjct: 212 VEADIKEFTTLKADKKFHVLLNILRHCRRLSEVRGG 247

[Close]

BLAST of Cp4.1LG17g11000 vs. NCBI nr
Match: XP_023515285.1 (spindle and kinetochore-associated protein 1 homolog [Cucurbita pepo subsp. pepo] >XP_023515286.1 spindle and kinetochore-associated protein 1 homolog [Cucurbita pepo subsp. pepo] >XP_023515287.1 spindle and kinetochore-associated protein 1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 165 bits (417), Expect = 1.08e-48
Identity = 88/98 (89.80%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 1   MKGRLTVDKVNAAINDMVTYAEANAQLIVVPKKK----------ELRDIATTEAVKGKYF 60
           MKGRLTVDKVNAAINDMVTYAEANAQLIVVPKKK          ELRDIATTEAVKGKYF
Sbjct: 162 MKGRLTVDKVNAAINDMVTYAEANAQLIVVPKKKLAENQWEKALELRDIATTEAVKGKYF 221

Query: 61  FLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQ 88
           FLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQ
Sbjct: 222 FLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQ 259

[Close]

BLAST of Cp4.1LG17g11000 vs. NCBI nr
Match: XP_023004833.1 (spindle and kinetochore-associated protein 1 homolog [Cucurbita maxima] >XP_023004834.1 spindle and kinetochore-associated protein 1 homolog [Cucurbita maxima] >XP_023004835.1 spindle and kinetochore-associated protein 1 homolog [Cucurbita maxima] >XP_023004837.1 spindle and kinetochore-associated protein 1 homolog [Cucurbita maxima] >XP_023004838.1 spindle and kinetochore-associated protein 1 homolog [Cucurbita maxima] >XP_023004839.1 spindle and kinetochore-associated protein 1 homolog [Cucurbita maxima])

HSP 1 Score: 163 bits (413), Expect = 4.34e-48
Identity = 87/98 (88.78%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 1   MKGRLTVDKVNAAINDMVTYAEANAQLIVVPKKK----------ELRDIATTEAVKGKYF 60
           MKGRLTVDKVNAAINDM TYAEANAQLIVVPKKK          ELRDIATTEAVKGKYF
Sbjct: 162 MKGRLTVDKVNAAINDMATYAEANAQLIVVPKKKLAENQWEKALELRDIATTEAVKGKYF 221

Query: 61  FLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQ 88
           FLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQ
Sbjct: 222 FLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQ 259

[Close]

BLAST of Cp4.1LG17g11000 vs. NCBI nr
Match: XP_022960263.1 (spindle and kinetochore-associated protein 1 homolog [Cucurbita moschata] >XP_022960264.1 spindle and kinetochore-associated protein 1 homolog [Cucurbita moschata] >XP_022960265.1 spindle and kinetochore-associated protein 1 homolog [Cucurbita moschata] >XP_022960266.1 spindle and kinetochore-associated protein 1 homolog [Cucurbita moschata] >XP_022960267.1 spindle and kinetochore-associated protein 1 homolog [Cucurbita moschata] >XP_022960268.1 spindle and kinetochore-associated protein 1 homolog [Cucurbita moschata])

HSP 1 Score: 163 bits (413), Expect = 4.34e-48
Identity = 87/98 (88.78%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 1   MKGRLTVDKVNAAINDMVTYAEANAQLIVVPKKK----------ELRDIATTEAVKGKYF 60
           MKGRLTVDKVNAAINDM TYAEANAQLIVVPKKK          ELRDIATTEAVKGKYF
Sbjct: 162 MKGRLTVDKVNAAINDMATYAEANAQLIVVPKKKLAENQWEKALELRDIATTEAVKGKYF 221

Query: 61  FLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQ 88
           FLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQ
Sbjct: 222 FLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQ 259

[Close]

BLAST of Cp4.1LG17g11000 vs. NCBI nr
Match: KAG6593001.1 (Spindle and kinetochore-associated protein 1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 163 bits (413), Expect = 1.20e-47
Identity = 87/98 (88.78%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 1   MKGRLTVDKVNAAINDMVTYAEANAQLIVVPKKK----------ELRDIATTEAVKGKYF 60
           MKGRLTVDKVNAAINDM TYAEANAQLIVVPKKK          ELRDIATTEAVKGKYF
Sbjct: 200 MKGRLTVDKVNAAINDMATYAEANAQLIVVPKKKLAENQWEKALELRDIATTEAVKGKYF 259

Query: 61  FLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQ 88
           FLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQ
Sbjct: 260 FLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQ 297

[Close]

BLAST of Cp4.1LG17g11000 vs. NCBI nr
Match: XP_038877293.1 (spindle and kinetochore-associated protein 1 homolog [Benincasa hispida])

HSP 1 Score: 159 bits (401), Expect = 2.89e-46
Identity = 83/98 (84.69%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 1   MKGRLTVDKVNAAINDMVTYAEANAQLIVVPKKK----------ELRDIATTEAVKGKYF 60
           M+GRLTVDKVNAA+NDM TYAEANAQLIVVPKKK          ELRDIA T+AVKGKYF
Sbjct: 163 MRGRLTVDKVNAAVNDMATYAEANAQLIVVPKKKLAENLWEKALELRDIAATDAVKGKYF 222

Query: 61  FLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQ 88
           FLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQ
Sbjct: 223 FLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQ 260

[Close]

BLAST of Cp4.1LG17g11000 vs. ExPASy TrEMBL
Match: A0A6J1KRI3 (spindle and kinetochore-associated protein 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111498018 PE=3 SV=1)

HSP 1 Score: 163 bits (413), Expect = 2.10e-48
Identity = 87/98 (88.78%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 1   MKGRLTVDKVNAAINDMVTYAEANAQLIVVPKKK----------ELRDIATTEAVKGKYF 60
           MKGRLTVDKVNAAINDM TYAEANAQLIVVPKKK          ELRDIATTEAVKGKYF
Sbjct: 162 MKGRLTVDKVNAAINDMATYAEANAQLIVVPKKKLAENQWEKALELRDIATTEAVKGKYF 221

Query: 61  FLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQ 88
           FLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQ
Sbjct: 222 FLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQ 259

[Close]

BLAST of Cp4.1LG17g11000 vs. ExPASy TrEMBL
Match: A0A6J1H8L1 (spindle and kinetochore-associated protein 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111461060 PE=3 SV=1)

HSP 1 Score: 163 bits (413), Expect = 2.10e-48
Identity = 87/98 (88.78%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 1   MKGRLTVDKVNAAINDMVTYAEANAQLIVVPKKK----------ELRDIATTEAVKGKYF 60
           MKGRLTVDKVNAAINDM TYAEANAQLIVVPKKK          ELRDIATTEAVKGKYF
Sbjct: 162 MKGRLTVDKVNAAINDMATYAEANAQLIVVPKKKLAENQWEKALELRDIATTEAVKGKYF 221

Query: 61  FLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQ 88
           FLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQ
Sbjct: 222 FLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQ 259

[Close]

BLAST of Cp4.1LG17g11000 vs. ExPASy TrEMBL
Match: A0A7J9EH11 (Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_007716 PE=3 SV=1)

HSP 1 Score: 157 bits (396), Expect = 5.73e-46
Identity = 76/87 (87.36%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1   MKGRLTVDKVNAAINDMVTYAEANAQLIVVPKKKELRDIATTEAVKGKYFFLETDMRGPS 60
           M+GRLT++KVNAAINDM TYAEANAQLI  PKKKELRDIATTE++KGK+FFLETDM+GPS
Sbjct: 161 MRGRLTLEKVNAAINDMATYAEANAQLIAAPKKKELRDIATTESIKGKHFFLETDMKGPS 220

Query: 61  LKLDNTGKAILTVLRHLGRISETRIGH 87
           LKLDNTGKAILTVLRHLGRISETR+GH
Sbjct: 221 LKLDNTGKAILTVLRHLGRISETRMGH 247

[Close]

BLAST of Cp4.1LG17g11000 vs. ExPASy TrEMBL
Match: A0A7J8UZF7 (Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_008337 PE=3 SV=1)

HSP 1 Score: 157 bits (396), Expect = 5.73e-46
Identity = 76/87 (87.36%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1   MKGRLTVDKVNAAINDMVTYAEANAQLIVVPKKKELRDIATTEAVKGKYFFLETDMRGPS 60
           M+GRLT++KVNAAINDM TYAEANAQLI  PKKKELRDIATTE++KGK+FFLETDM+GPS
Sbjct: 161 MRGRLTLEKVNAAINDMATYAEANAQLIAAPKKKELRDIATTESIKGKHFFLETDMKGPS 220

Query: 61  LKLDNTGKAILTVLRHLGRISETRIGH 87
           LKLDNTGKAILTVLRHLGRISETR+GH
Sbjct: 221 LKLDNTGKAILTVLRHLGRISETRMGH 247

[Close]

BLAST of Cp4.1LG17g11000 vs. ExPASy TrEMBL
Match: A0A7J9H5Q5 (Uncharacterized protein OS=Gossypium harknessii OX=34285 GN=Gohar_004607 PE=3 SV=1)

HSP 1 Score: 157 bits (396), Expect = 5.73e-46
Identity = 76/87 (87.36%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1   MKGRLTVDKVNAAINDMVTYAEANAQLIVVPKKKELRDIATTEAVKGKYFFLETDMRGPS 60
           M+GRLT++KVNAAINDM TYAEANAQLI  PKKKELRDIATTE++KGK+FFLETDM+GPS
Sbjct: 161 MRGRLTLEKVNAAINDMATYAEANAQLIAAPKKKELRDIATTESIKGKHFFLETDMKGPS 220

Query: 61  LKLDNTGKAILTVLRHLGRISETRIGH 87
           LKLDNTGKAILTVLRHLGRISETR+GH
Sbjct: 221 LKLDNTGKAILTVLRHLGRISETRMGH 247

[Close]

BLAST of Cp4.1LG17g11000 vs. TAIR 10
Match: AT3G60660.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1395 (InterPro:IPR009829); Has 131 Blast hits to 131 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 83; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 135.2 bits (339), Expect = 2.6e-32
Identity = 70/96 (72.92%), Postives = 79/96 (82.29%), Query Frame = 0


Query: 1   MKGRLTVDKVNAAINDMVTYAEANAQLIVVPKKK----------ELRDIATTEAVKGKYF 60
           M+GRLT++KVNAAINDM +YAEANA LI   K+K          +LRDI T +AVKGK+F
Sbjct: 166 MRGRLTLEKVNAAINDMASYAEANAHLIAASKQKLAENLWEKALKLRDIVTEQAVKGKHF 225

Query: 61  FLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIG 87
           FLETDM+GPSLKLDNTGKAILTVLRHLGRISETRIG
Sbjct: 226 FLETDMKGPSLKLDNTGKAILTVLRHLGRISETRIG 261

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g11000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZZ7	3.6e-31	72.92	Spindle and kinetochore-associated protein 1 homolog OS=Arabidopsis thaliana OX=...	[more]
Q7XAM0	2.2e-28	63.92	Spindle and kinetochore-associated protein 1 homolog OS=Oryza sativa subsp. japo...	[more]
B8B624	6.4e-28	63.92	Spindle and kinetochore-associated protein 1 homolog OS=Oryza sativa subsp. indi...	[more]
B4FGS2	8.3e-28	63.92	Spindle and kinetochore-associated protein 1 homolog OS=Zea mays OX=4577 PE=2 SV...	[more]
Q96BD8	3.8e-04	31.25	Spindle and kinetochore-associated protein 1 OS=Homo sapiens OX=9606 GN=SKA1 PE=...	[more]

BLAST of Cp4.1LG17g11000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515285.1	1.08e-48	89.80	spindle and kinetochore-associated protein 1 homolog [Cucurbita pepo subsp. pepo...	[more]
XP_023004833.1	4.34e-48	88.78	spindle and kinetochore-associated protein 1 homolog [Cucurbita maxima] >XP_0230...	[more]
XP_022960263.1	4.34e-48	88.78	spindle and kinetochore-associated protein 1 homolog [Cucurbita moschata] >XP_02...	[more]
KAG6593001.1	1.20e-47	88.78	Spindle and kinetochore-associated protein 1-like protein, partial [Cucurbita ar...	[more]
XP_038877293.1	2.89e-46	84.69	spindle and kinetochore-associated protein 1 homolog [Benincasa hispida]	[more]

BLAST of Cp4.1LG17g11000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KRI3	2.10e-48	88.78	spindle and kinetochore-associated protein 1 homolog OS=Cucurbita maxima OX=3661...	[more]
A0A6J1H8L1	2.10e-48	88.78	spindle and kinetochore-associated protein 1 homolog OS=Cucurbita moschata OX=36...	[more]
A0A7J9EH11	5.73e-46	87.36	Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_007716 PE=3 SV=1	[more]
A0A7J8UZF7	5.73e-46	87.36	Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_008337 PE=3...	[more]
A0A7J9H5Q5	5.73e-46	87.36	Uncharacterized protein OS=Gossypium harknessii OX=34285 GN=Gohar_004607 PE=3 SV...	[more]

BLAST of Cp4.1LG17g11000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60660.1	2.6e-32	72.92	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1395...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009829	Spindle and kinetochore-associated protein 1	PFAM	PF07160	SKA1	coord: 1..87 e-value: 2.4E-32 score: 112.8
IPR009829	Spindle and kinetochore-associated protein 1	PANTHER	PTHR28573	SPINDLE AND KINETOCHORE-ASSOCIATED PROTEIN 1	coord: 1..88
IPR042031	SKA1 microtubule binding domain	GENE3D	1.10.10.1890		coord: 1..88 e-value: 6.0E-23 score: 83.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g11000.1	Cp4.1LG17g11000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0007059	chromosome segregation
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0031110	regulation of microtubule polymerization or depolymerization
cellular_component	GO:0072686	mitotic spindle
cellular_component	GO:0000940	outer kinetochore
cellular_component	GO:0005876	spindle microtubule
molecular_function	GO:0008017	microtubule binding