Cp4.1LG17g08050 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g08050
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Nuclear transcription factor Y subunit
Location	Cp4.1LG17: 5519163 .. 5522348 (+)
RNA-Seq Expression	Cp4.1LG17g08050
Synteny	Cp4.1LG17g08050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACTGCGCGCAGAGAGGGGAGAGATAGAGGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAATGGAGCTGAGCTAGAAAACCAGAGCGACTTGCGAAGCTAAAGCTTGTCTAGGGTTCGATCGTCTGTTTCACATCACAGTTGTAAGTGATTTTCCTGCAAATTGCTTTCACTTCTCACTGATTTCGCTCCTTTCAATCGGAATTTTGATCGGAGTTTGGTTTCCTTAAGGCTCCATTTCTCTCGAGAAATTTGTGCTTGTTTTTCATCTACAAGCGACGGAATCATGATATTTACGGAAAACACTAGGAATTTTGAGTTTATGAATGAGTAGAACAGAGAAATACTGTTTGTTTGTTAGTTTTTTTTTTCCCTAATTTTTCTCTTAACTTTTAGTTTATTTGCTGCATGATTTTCGGCAACCAGAGAAATATATCTATAGAGCCTCTGTTTTGGATCTATGGAAATTGCAGAGGTTGAAGTTTGTATAGTCTGTTTTGGATGTATGTCTCTTGATATCTTGAAGCCCTGTAATGTATTGTAGATGAGTTATATGGATCTCTGATGAGTTTCTGTCCACATTGAATGATCATCCGGCATTCTGGAGCTCTTTCAATGATTTTGAGATGCGAGAATTTTGGGTTGCTTAGGGTTATAGAACCCTAAGTGTGAGATCACACATCGGTTGGGGAAGTGAAGGAAACATTGTTTTTAAGGGTGTGTAAACCTCTTAGTAGTAAATGCATTTTATAAACCTTGAAGGGAAGCCCAAACGGGAAATCCAAAGAAGACAATATTTGCTAGCGGTGGGCTTGAGCCGTTACAATAAGATCGTGTCCTCCCTATTGTTCATGCGCTTGAATCTTCAGATGAACAATAATTTAAACCCTCGACGTACTTTGGAGAAGGCTCGGACTTTTTTTAGAGCAGCCCCAAACCATGGAATCCGGTGTGGTATAAGTAGAAGTGATTTATATTGTTTTTGTTTCTAATGTTCTTCCCTTTGGGGTGGCAGAACAAGTTTCAAACAATGCCCTCAAAACCAGGAATTGTAGAACAAGAAGCTGCTGATGGGGCGAAGTATTTGCTGCAATCAACCAAATACTCTGAGCCTTGGTGGCATGGCGTTGGGAACAATACCATCACTGATGAAGATGCTACCAAAACGTCTTCTGCTGAATACCTGAACGTTACTGTTACCAGTGCAGCTATGCTTTCACAAGCAAATGGTATTAGTTAATTTAATATGCTTCCTATGAACACAATTTAAGCAACATATTGAAACTTTTCTTGGATCAGATGAAAATACTGGGCAAGAAGTTCAGCATCTCAAGTACATTCCATTTTCGACATCCCCACCCGTGGGCGAACGCCTAGATCCAAATTCCCAGATGGAACTTGTTGGCCACTCGATTGTAAGAACGAACTGTCTATCTTTCTCTCTGAAATCAATGTATATGAGTAGGTGCCTAAGTTCTTCATTCGTCTGCAATGACTAATGAATATATTTCTTCCCTTGAAGAAATAGATATTTGGGAATTTAGACTTTGTTTCTCTTTACTGGATTTCAAAAGAACTTCAAGGATCTCCATTTGCAGGTTTTGACATCATATCCTTTTTCAGATGCACAATGTTGTCAAATGCTGACTTCATATGGACCACAAACAACGGTATGCTCTGATCTCTGGTACAGTTTCTTTTGCTAATTCATATGATCAGTTGCCTTGCATAGAAACGAAAGGCATCCTACCAGGGTACTCATCTGTGTTTATTATGTATTGTTGAAGTTTATTCGGTATGAACAGACGCGAAATGTTTGTTTCTTGCAATTCTTATGATATATTGTTTAACCCTGAGTTCTACTGAACAAGAATGCATATAAGAATGGGGGATCCTTTTGTATAGATCCTACTTGCTGATTGGCTGTTCAAGGATTATGATTATACTTGATTTCCCTGCAGTTACCTCATTTTTATGGACTTCACCATGCTAGGATGCCATTACCCCTTGAAATGGAAGCAGAGCCTGTTTATGTGAACGCAAAGCAGTATCATGGTATCCTGAGGAGAAGACAGTCGCGTGCCAAAGCTGAGCTTGAGAAGAAAGTGATAAAAAGTAGAAAGGTATAGCAGCTAACTTGTTTCATTCAAGGACTAAGCGGACCAAAAATGAACACTTTTAGTTATTGAAAGAAACTTTTGCTAGAAGTTGTCTTTCTGTTCTTATCGATATTACAATTGATCATAGTTGTATCTCATAATTTCGTTTTCTGGATACTCTTTTCCATTTTGTGCAGCCATATCTTCATGAATCCAGACATCTCCATGCTATGAGACGAGCAAGAGGCAGCGGAGGACGTTTCCTGAATACCAAAAAGCCGAACAGTGTTATTTCCAACAAAACTATGGAGGAAGACATCAATTCTAGTATCAACCATGTATCAGAACCTGTCAGTGAGGGTAGATCAAATTACATGGTGGCTAATGAAAATGGAATGAAGGATACACTTGATGATCAACAAAAGGAGGACAAAGAGTTCATGCCTCAAAATATGCAGATAACACACGCTTTCTTCAATGGTGGAAAGTCGAATGGCCATGGTTTATCCACATACAATTCAAAACTTGCTGATGAAAGCATACAGGTGAATGCGGCTCCACAGAGGGCCATCCCCATCAAGTGAAAGTTTCTTGATGGGAATGGGGCTTCCTTCTCCAACGCTGTTTAACCAGTTTCACTGCAAAAAACTCGAGATTCGGTAAGATCGTTGAAGATCGTTGATTCTTTTAAGGCTGTGTTTCTGGTTGCACAAGTTGGTGGATTTACCCCCCTTCTCTGCTGGGAAGAACACCGCTTTTGGTGGTGTTTCTCAGGCAATTCATTCTTGGCTTTGGTTGAAGGAGGATGATGAAATGCAGTGCACCAAAAATGTGGTACTTTCGCTCTGCTATTTCCTTTCTCTTTACCTTTTCTATTTCCTATGTAATTCTAATTCTGAATTGTGTCTCTGAAACACAAAGATTTGATGTGTGCAGACTTGTAATTTATTTTAGACGCAGTTATGTGCTGTGTACCTATTCAACTTTGTGTGCTTGTTTTCAGATGATATTCATTTTCAAGTGTGTGCATACATTAAATTATACATAACAAAGAA

mRNA sequence

CCACTGCGCGCAGAGAGGGGAGAGATAGAGGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAATGGAGCTGAGCTAGAAAACCAGAGCGACTTGCGAAGCTAAAGCTTGTCTAGGGTTCGATCGTCTGTTTCACATCACAGTTGTAAGTGATTTTCCTGCAAATTGCTTTCACTTCTCACTGATTTCGCTCCTTTCAATCGGAATTTTGATCGGAGTTTGGTTTCCTTAAGGCTCCATTTCTCTCGAGAAATTTGTGCTTGTTTTTCATCTACAAGCGACGGAATCATGATATTTACGGAAAACACTAGGAATTTTGAGTTTATGAATGAGTAGAACAGAGAAATACTGTTTGTTTGTTAGTTTTTTTTTTCCCTAATTTTTCTCTTAACTTTTAGTTTATTTGCTGCATGATTTTCGGCAACCAGAGAAATATATCTATAGAGCCTCTGTTTTGGATCTATGGAAATTGCAGAGGTTGAAGTTTGTATAGTCTGTTTTGGATGTATGTCTCTTGATATCTTGAAGCCCTGTAATGTATTGTAGATGAGTTATATGGATCTCTGATGAGTTTCTGTCCACATTGAATGATCATCCGGCATTCTGGAGCTCTTTCAATGATTTTGAGATGCGAGAATTTTGGGTTGCTTAGGGTTATAGAACCCTAAGTGTGAGATCACACATCGGTTGGGGAAGTGAAGGAAACATTGTTTTTAAGGGTGTGTAAACCTCTTAGTAGTAAATGCATTTTATAAACCTTGAAGGGAAGCCCAAACGGGAAATCCAAAGAAGACAATATTTGCTAGCGGTGGGCTTGAGCCGTTACAATAAGATCGTGTCCTCCCTATTGTTCATGCGCTTGAATCTTCAGATGAACAATAATTTAAACCCTCGACGTACTTTGGAGAAGGCTCGGACTTTTTTTAGAGCAGCCCCAAACCATGGAATCCGGTGTGGTATAAGTAGAAGTGATTTATATTGTTTTTGTTTCTAATGTTCTTCCCTTTGGGGTGGCAGAACAAGTTTCAAACAATGCCCTCAAAACCAGGAATTGTAGAACAAGAAGCTGCTGATGGGGCGAAGTATTTGCTGCAATCAACCAAATACTCTGAGCCTTGGTGGCATGGCGTTGGGAACAATACCATCACTGATGAAGATGCTACCAAAACGTCTTCTGCTGAATACCTGAACGTTACTGTTACCAGTGCAGCTATGCTTTCACAAGCAAATGATGAAAATACTGGGCAAGAAGTTCAGCATCTCAAGTACATTCCATTTTCGACATCCCCACCCGTGGGCGAACGCCTAGATCCAAATTCCCAGATGGAACTTGTTGGCCACTCGATTGTTTTGACATCATATCCTTTTTCAGATGCACAATGTTGTCAAATGCTGACTTCATATGGACCACAAACAACGTTACCTCATTTTTATGGACTTCACCATGCTAGGATGCCATTACCCCTTGAAATGGAAGCAGAGCCTGTTTATGTGAACGCAAAGCAGTATCATGGTATCCTGAGGAGAAGACAGTCGCGTGCCAAAGCTGAGCTTGAGAAGAAAGTGATAAAAAGTAGAAAGCCATATCTTCATGAATCCAGACATCTCCATGCTATGAGACGAGCAAGAGGCAGCGGAGGACGTTTCCTGAATACCAAAAAGCCGAACAGTGTTATTTCCAACAAAACTATGGAGGAAGACATCAATTCTAGTATCAACCATGTATCAGAACCTGTCAGTGAGGGTAGATCAAATTACATGGTGGCTAATGAAAATGGAATGAAGGATACACTTGATGATCAACAAAAGGAGGACAAAGAGTTCATGCCTCAAAATATGCAGATAACACACGCTTTCTTCAATGGTGGAAAGTCGAATGGCCATGGTTTATCCACATACAATTCAAAACTTGCTGATGAAAGCATACAGGTGAATGCGGCTCCACAGAGGGCCATCCCCATCAAGTGAAAGTTTCTTGATGGGAATGGGGCTTCCTTCTCCAACGCTGTTTAACCAGTTTCACTGCAAAAAACTCGAGATTCGGTAAGATCGTTGAAGATCGTTGATTCTTTTAAGGCTGTGTTTCTGGTTGCACAAGTTGGTGGATTTACCCCCCTTCTCTGCTGGGAAGAACACCGCTTTTGGTGGTGTTTCTCAGGCAATTCATTCTTGGCTTTGGTTGAAGGAGGATGATGAAATGCAGTGCACCAAAAATGTGGTACTTTCGCTCTGCTATTTCCTTTCTCTTTACCTTTTCTATTTCCTATGTAATTCTAATTCTGAATTGTGTCTCTGAAACACAAAGATTTGATGTGTGCAGACTTGTAATTTATTTTAGACGCAGTTATGTGCTGTGTACCTATTCAACTTTGTGTGCTTGTTTTCAGATGATATTCATTTTCAAGTGTGTGCATACATTAAATTATACATAACAAAGAA

Coding sequence (CDS)

ATGTTCTTCCCTTTGGGGTGGCAGAACAAGTTTCAAACAATGCCCTCAAAACCAGGAATTGTAGAACAAGAAGCTGCTGATGGGGCGAAGTATTTGCTGCAATCAACCAAATACTCTGAGCCTTGGTGGCATGGCGTTGGGAACAATACCATCACTGATGAAGATGCTACCAAAACGTCTTCTGCTGAATACCTGAACGTTACTGTTACCAGTGCAGCTATGCTTTCACAAGCAAATGATGAAAATACTGGGCAAGAAGTTCAGCATCTCAAGTACATTCCATTTTCGACATCCCCACCCGTGGGCGAACGCCTAGATCCAAATTCCCAGATGGAACTTGTTGGCCACTCGATTGTTTTGACATCATATCCTTTTTCAGATGCACAATGTTGTCAAATGCTGACTTCATATGGACCACAAACAACGTTACCTCATTTTTATGGACTTCACCATGCTAGGATGCCATTACCCCTTGAAATGGAAGCAGAGCCTGTTTATGTGAACGCAAAGCAGTATCATGGTATCCTGAGGAGAAGACAGTCGCGTGCCAAAGCTGAGCTTGAGAAGAAAGTGATAAAAAGTAGAAAGCCATATCTTCATGAATCCAGACATCTCCATGCTATGAGACGAGCAAGAGGCAGCGGAGGACGTTTCCTGAATACCAAAAAGCCGAACAGTGTTATTTCCAACAAAACTATGGAGGAAGACATCAATTCTAGTATCAACCATGTATCAGAACCTGTCAGTGAGGGTAGATCAAATTACATGGTGGCTAATGAAAATGGAATGAAGGATACACTTGATGATCAACAAAAGGAGGACAAAGAGTTCATGCCTCAAAATATGCAGATAACACACGCTTTCTTCAATGGTGGAAAGTCGAATGGCCATGGTTTATCCACATACAATTCAAAACTTGCTGATGAAAGCATACAGGTGAATGCGGCTCCACAGAGGGCCATCCCCATCAAGTGA

Protein sequence

MFFPLGWQNKFQTMPSKPGIVEQEAADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTSSAEYLNVTVTSAAMLSQANDENTGQEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVLTSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSSINHVSEPVSEGRSNYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLSTYNSKLADESIQVNAAPQRAIPIK

Homology

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BLAST of Cp4.1LG17g08050 vs. ExPASy Swiss-Prot
Match: Q945M9 (Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana OX=3702 GN=NFYA9 PE=1 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 6.6e-30
Identity = 93/230 (40.43%), Postives = 126/230 (54.78%), Query Frame = 0


Query: 41  PWWHGVGNNTITDEDATKTSSAEYLNVTVTSAAMLSQANDENTGQEVQHLKYIPFSTSP- 100
           PW                  S++ + + + S    S +N +NT  +   +     +TSP 
Sbjct: 34  PWHRAAAACNANSSVEAGDKSSKSIALALESNGSKSPSNRDNTVNKESQV-----TTSPQ 93

Query: 101 PVGERLDPNSQM------------ELVGHSI-VLTSYPFSDAQCCQMLTSYG--PQTTLP 160
             G+  D N +             +LVGH++   +S P+ D     ++ +YG  P   +P
Sbjct: 94  SAGDYSDKNQESLHHGITQPPPHPQLVGHTVGWASSNPYQDPYYAGVMGAYGHHPLGFVP 153

Query: 161 HFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRH 220
            + G+ H+RMPLP EM  EPV+VNAKQY  ILRRRQ+RAKAELEKK+IKSRKPYLHESRH
Sbjct: 154 -YGGMPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKSRKPYLHESRH 213

Query: 221 LHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSSINHVSEPVSEGRSN 255
            HAMRR RG+GGRF   KK N+  S +  EE  N    HV++  S   S+
Sbjct: 214 QHAMRRPRGTGGRF--AKKTNTEASKRKAEEKSN---GHVTQSPSSSNSD 252

[Close]

BLAST of Cp4.1LG17g08050 vs. ExPASy Swiss-Prot
Match: Q9LXV5 (Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana OX=3702 GN=NFYA1 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.3e-29
Identity = 93/227 (40.97%), Postives = 115/227 (50.66%), Query Frame = 0


Query: 14  MPSKPGIVEQEAADGAKYLLQSTKYSEPWW----HGVGNNTITDEDATKTSSAEYLNVT- 73
           M SKPG   +E  +    + Q   Y+EPWW     GV          + +SS +  N + 
Sbjct: 1   MQSKPGRENEEEVNNHHAVQQPMMYAEPWWKNNSFGVVPQARPSGIPSNSSSLDCPNGSE 60

Query: 74  ---VTSAAMLSQANDENTGQEVQHLKYIPFSTSPPVG-ERLDPNSQM------------E 133
              V SA+     N EN G            +    G E  DP   +            E
Sbjct: 61  SNDVHSASEDGALNGENDGTWKDSQAATSSRSVDNHGMEGNDPALSIRNMHDQPLVQPPE 120

Query: 134 LVGHSIVLTSYPFSDAQCCQMLTSYG-PQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQ 193
           LVGH I     P+ D     ++ +YG  Q     + G+   R  LPL+M  EPVYVNAKQ
Sbjct: 121 LVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVNAKQ 180

Query: 194 YHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRF 219
           Y GILRRR++RAKAELE+KVI+ RKPYLHESRH HAMRRAR SGGRF
Sbjct: 181 YEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRF 227

[Close]

BLAST of Cp4.1LG17g08050 vs. ExPASy Swiss-Prot
Match: Q8VY64 (Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana OX=3702 GN=NFYA4 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 6.4e-25
Identity = 81/202 (40.10%), Postives = 106/202 (52.48%), Query Frame = 0


Query: 70  TSAAMLSQANDENTGQEVQHLKYIPFSTSPPVGERLDPNS-QMELVGHSIVLTSYPFSDA 129
           +S   LS  N+ +  +E    +  P   S    E +D NS   E + H +    YP+ D 
Sbjct: 3   SSVHELSDNNESHAKKERPDSQTRPQVPSGRSSESIDTNSVYSEPMAHGL----YPYPDP 62

Query: 130 QCCQMLTSYGPQTTLPHFY--------GLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQ 189
                 + +  Q  LPH Y        G+    +PL  +   EPV+VNAKQYHGILRRRQ
Sbjct: 63  ---YYRSVFAQQAYLPHPYPGVQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQ 122

Query: 190 SRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSS 249
           SRAK E   + IK++KPY+HESRHLHA+RR RG GGRFLN KK N        EE+  +S
Sbjct: 123 SRAKLEARNRAIKAKKPYMHESRHLHAIRRPRGCGGRFLNAKKEN----GDHKEEEEATS 182

Query: 250 INHVSEPVSEGRSNYMVANENG 263
             + SE  S  RS  +    +G
Sbjct: 183 DENTSEASSSLRSEKLAMATSG 193

[Close]

BLAST of Cp4.1LG17g08050 vs. ExPASy Swiss-Prot
Match: Q8LFU0 (Nuclear transcription factor Y subunit A-10 OS=Arabidopsis thaliana OX=3702 GN=NFYA10 PE=2 SV=2)

HSP 1 Score: 116.3 bits (290), Expect = 6.4e-25
Identity = 83/237 (35.02%), Postives = 119/237 (50.21%), Query Frame = 0


Query: 41  PWWHGVGNNTITDEDATKTSSAEYLNVTVTSAAMLSQANDENTGQEVQHLKYIPFSTSPP 100
           PWW+  G+  +T E  +  +S  +  V   +        D+ T   +         T  P
Sbjct: 13  PWWNAFGSQPLTTESLSGEASDSFTGVKAVTTEAEQGVVDKQTSTTL--------FTFSP 72

Query: 101 VGERLDPNSQMELVGHSIVLTSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHA-------- 160
            GE+   +     V  ++    + F  AQ       Y     +  +YG+  A        
Sbjct: 73  GGEKSSRDVPKPHVAFAMQSACFEFGFAQPMM----YTKHPHVEQYYGVVSAYGSQRSSG 132

Query: 161 RMPLPLEMEAE---PVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMR 220
           R+ +PL+ME E    +YVN+KQYHGI+RRRQSRAKAE   K+ + RKPY+H SRHLHAMR
Sbjct: 133 RVMIPLKMETEEDGTIYVNSKQYHGIIRRRQSRAKAE---KLSRCRKPYMHHSRHLHAMR 192

Query: 221 RARGSGGRFLNTKKPNSVISNKTMEEDINSSINHVSEPVSEGRSNYMVANENGMKDT 267
           R RGSGGRFLNTK  ++   +K      NS  + V  P +E  ++   ANE+ + D+
Sbjct: 193 RPRGSGGRFLNTKTADAAKQSKPS----NSQSSEVFHPENETINSSREANESNLSDS 230

[Close]

BLAST of Cp4.1LG17g08050 vs. ExPASy Swiss-Prot
Match: Q84JP1 (Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana OX=3702 GN=NFYA7 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.4e-24
Identity = 62/106 (58.49%), Postives = 73/106 (68.87%), Query Frame = 0


Query: 148 GLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHA 207
           G+    +PLP +   EPV+VNAKQYHGILRRRQSRA+ E + KVIKSRKPYLHESRHLHA
Sbjct: 85  GVQQQGVPLPSDAVEEPVFVNAKQYHGILRRRQSRARLESQNKVIKSRKPYLHESRHLHA 144

Query: 208 MRRARGSGGRFLNTKKPNSVISNKTMEEDINSSINHVSEPVSEGRS 254
           +RR RG GGRFLN KK +    + + EE  N S    +   S G S
Sbjct: 145 IRRPRGCGGRFLNAKKEDEHHEDSSHEEKSNLSAGKSAMAASSGTS 190

[Close]

BLAST of Cp4.1LG17g08050 vs. NCBI nr
Match: XP_023515220.1 (nuclear transcription factor Y subunit A-4-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 652 bits (1682), Expect = 3.68e-236
Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 0


Query: 1   MFFPLGWQNKFQTMPSKPGIVEQEAADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTS 60
           MFFPLGWQNKFQTMPSKPGIVEQEAADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTS
Sbjct: 1   MFFPLGWQNKFQTMPSKPGIVEQEAADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTS 60

Query: 61  SAEYLNVTVTSAAMLSQANDENTGQEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVL 120
           SAEYLNVTVTSAAMLSQANDENTGQEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVL
Sbjct: 61  SAEYLNVTVTSAAMLSQANDENTGQEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVL 120

Query: 121 TSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQ 180
           TSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQ
Sbjct: 121 TSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQ 180

Query: 181 SRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSS 240
           SRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSS
Sbjct: 181 SRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSS 240

Query: 241 INHVSEPVSEGRSNYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLS 300
           INHVSEPVSEGRSNYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLS
Sbjct: 241 INHVSEPVSEGRSNYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLS 300

Query: 301 TYNSKLADESIQVNAAPQRAIPIK 324
           TYNSKLADESIQVNAAPQRAIPIK
Sbjct: 301 TYNSKLADESIQVNAAPQRAIPIK 324

[Close]

BLAST of Cp4.1LG17g08050 vs. NCBI nr
Match: KAG7025650.1 (Nuclear transcription factor Y subunit A-9 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 640 bits (1650), Expect = 2.78e-231
Identity = 318/324 (98.15%), Postives = 320/324 (98.77%), Query Frame = 0


Query: 1   MFFPLGWQNKFQTMPSKPGIVEQEAADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTS 60
           MFF LGWQNKFQTMPSKPGIVEQE ADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTS
Sbjct: 1   MFFLLGWQNKFQTMPSKPGIVEQEVADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTS 60

Query: 61  SAEYLNVTVTSAAMLSQANDENTGQEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVL 120
           SAEYLNVTVTSAAMLSQANDENTG+EVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVL
Sbjct: 61  SAEYLNVTVTSAAMLSQANDENTGKEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVL 120

Query: 121 TSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQ 180
           TSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQ
Sbjct: 121 TSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQ 180

Query: 181 SRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSS 240
           SRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINS 
Sbjct: 181 SRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSG 240

Query: 241 INHVSEPVSEGRSNYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLS 300
           INHVSEPVSEG SNYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLS
Sbjct: 241 INHVSEPVSEGGSNYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLS 300

Query: 301 TYNSKLADESIQVNAAPQRAIPIK 324
           TYNSKLADES+QVNAAPQRAIPIK
Sbjct: 301 TYNSKLADESMQVNAAPQRAIPIK 324

[Close]

BLAST of Cp4.1LG17g08050 vs. NCBI nr
Match: XP_022960498.1 (nuclear transcription factor Y subunit A-1-like isoform X1 [Cucurbita moschata] >XP_022960499.1 nuclear transcription factor Y subunit A-1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 631 bits (1628), Expect = 6.28e-228
Identity = 315/324 (97.22%), Postives = 318/324 (98.15%), Query Frame = 0


Query: 1   MFFPLGWQNKFQTMPSKPGIVEQEAADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTS 60
           MFF LGWQNKFQTMPSKPGIVEQE ADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTS
Sbjct: 1   MFFLLGWQNKFQTMPSKPGIVEQEVADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTS 60

Query: 61  SAEYLNVTVTSAAMLSQANDENTGQEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVL 120
           SAEYLNVTVTSAAMLSQANDENTG+EVQHLKYIPFSTSP VGERLDPNSQMELVGHSIVL
Sbjct: 61  SAEYLNVTVTSAAMLSQANDENTGKEVQHLKYIPFSTSPSVGERLDPNSQMELVGHSIVL 120

Query: 121 TSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQ 180
           TSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQ
Sbjct: 121 TSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQ 180

Query: 181 SRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSS 240
           SRAKAELEKKVI+SRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINS 
Sbjct: 181 SRAKAELEKKVIRSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSG 240

Query: 241 INHVSEPVSEGRSNYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLS 300
           INHVSEPVSEG SNYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNG GLS
Sbjct: 241 INHVSEPVSEGGSNYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGLGLS 300

Query: 301 TYNSKLADESIQVNAAPQRAIPIK 324
           TYNSKLADES+QVNAAPQRAIPIK
Sbjct: 301 TYNSKLADESMQVNAAPQRAIPIK 324

[Close]

BLAST of Cp4.1LG17g08050 vs. NCBI nr
Match: XP_023515221.1 (nuclear transcription factor Y subunit A-4-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 622 bits (1604), Expect = 1.76e-224
Identity = 311/311 (100.00%), Postives = 311/311 (100.00%), Query Frame = 0


Query: 14  MPSKPGIVEQEAADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTSSAEYLNVTVTSAA 73
           MPSKPGIVEQEAADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTSSAEYLNVTVTSAA
Sbjct: 1   MPSKPGIVEQEAADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTSSAEYLNVTVTSAA 60

Query: 74  MLSQANDENTGQEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVLTSYPFSDAQCCQM 133
           MLSQANDENTGQEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVLTSYPFSDAQCCQM
Sbjct: 61  MLSQANDENTGQEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVLTSYPFSDAQCCQM 120

Query: 134 LTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELEKKVIK 193
           LTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELEKKVIK
Sbjct: 121 LTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELEKKVIK 180

Query: 194 SRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSSINHVSEPVSEGRS 253
           SRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSSINHVSEPVSEGRS
Sbjct: 181 SRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSSINHVSEPVSEGRS 240

Query: 254 NYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLSTYNSKLADESIQV 313
           NYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLSTYNSKLADESIQV
Sbjct: 241 NYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLSTYNSKLADESIQV 300

Query: 314 NAAPQRAIPIK 324
           NAAPQRAIPIK
Sbjct: 301 NAAPQRAIPIK 311

[Close]

BLAST of Cp4.1LG17g08050 vs. NCBI nr
Match: KAG6593299.1 (Nuclear transcription factor Y subunit A-9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 624 bits (1610), Expect = 2.51e-223
Identity = 311/316 (98.42%), Postives = 313/316 (99.05%), Query Frame = 0


Query: 9   NKFQTMPSKPGIVEQEAADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTSSAEYLNVT 68
           NKFQTMPSKPGIVEQE ADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTSSAEYLNVT
Sbjct: 125 NKFQTMPSKPGIVEQEVADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTSSAEYLNVT 184

Query: 69  VTSAAMLSQANDENTGQEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVLTSYPFSDA 128
           VTSAAMLSQANDENTG+EVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVLTSYPFSDA
Sbjct: 185 VTSAAMLSQANDENTGKEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVLTSYPFSDA 244

Query: 129 QCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELE 188
           QCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELE
Sbjct: 245 QCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELE 304

Query: 189 KKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSSINHVSEPV 248
           KKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINS INHVSEPV
Sbjct: 305 KKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSGINHVSEPV 364

Query: 249 SEGRSNYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLSTYNSKLAD 308
           SEG SNYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLSTYNSKLAD
Sbjct: 365 SEGGSNYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLSTYNSKLAD 424

Query: 309 ESIQVNAAPQRAIPIK 324
           ES+QVNAAPQRAIPIK
Sbjct: 425 ESMQVNAAPQRAIPIK 440

[Close]

BLAST of Cp4.1LG17g08050 vs. ExPASy TrEMBL
Match: A0A6J1HB71 (Nuclear transcription factor Y subunit OS=Cucurbita moschata OX=3662 GN=LOC111461216 PE=3 SV=1)

HSP 1 Score: 631 bits (1628), Expect = 3.04e-228
Identity = 315/324 (97.22%), Postives = 318/324 (98.15%), Query Frame = 0


Query: 1   MFFPLGWQNKFQTMPSKPGIVEQEAADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTS 60
           MFF LGWQNKFQTMPSKPGIVEQE ADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTS
Sbjct: 1   MFFLLGWQNKFQTMPSKPGIVEQEVADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTS 60

Query: 61  SAEYLNVTVTSAAMLSQANDENTGQEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVL 120
           SAEYLNVTVTSAAMLSQANDENTG+EVQHLKYIPFSTSP VGERLDPNSQMELVGHSIVL
Sbjct: 61  SAEYLNVTVTSAAMLSQANDENTGKEVQHLKYIPFSTSPSVGERLDPNSQMELVGHSIVL 120

Query: 121 TSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQ 180
           TSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQ
Sbjct: 121 TSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQ 180

Query: 181 SRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSS 240
           SRAKAELEKKVI+SRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINS 
Sbjct: 181 SRAKAELEKKVIRSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSG 240

Query: 241 INHVSEPVSEGRSNYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLS 300
           INHVSEPVSEG SNYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNG GLS
Sbjct: 241 INHVSEPVSEGGSNYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGLGLS 300

Query: 301 TYNSKLADESIQVNAAPQRAIPIK 324
           TYNSKLADES+QVNAAPQRAIPIK
Sbjct: 301 TYNSKLADESMQVNAAPQRAIPIK 324

[Close]

BLAST of Cp4.1LG17g08050 vs. ExPASy TrEMBL
Match: A0A6J1H7S4 (Nuclear transcription factor Y subunit OS=Cucurbita moschata OX=3662 GN=LOC111461216 PE=3 SV=1)

HSP 1 Score: 605 bits (1560), Expect = 4.34e-218
Identity = 303/311 (97.43%), Postives = 306/311 (98.39%), Query Frame = 0


Query: 14  MPSKPGIVEQEAADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTSSAEYLNVTVTSAA 73
           MPSKPGIVEQE ADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTSSAEYLNVTVTSAA
Sbjct: 1   MPSKPGIVEQEVADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTSSAEYLNVTVTSAA 60

Query: 74  MLSQANDENTGQEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVLTSYPFSDAQCCQM 133
           MLSQANDENTG+EVQHLKYIPFSTSP VGERLDPNSQMELVGHSIVLTSYPFSDAQCCQM
Sbjct: 61  MLSQANDENTGKEVQHLKYIPFSTSPSVGERLDPNSQMELVGHSIVLTSYPFSDAQCCQM 120

Query: 134 LTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELEKKVIK 193
           LTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELEKKVI+
Sbjct: 121 LTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELEKKVIR 180

Query: 194 SRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSSINHVSEPVSEGRS 253
           SRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINS INHVSEPVSEG S
Sbjct: 181 SRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSGINHVSEPVSEGGS 240

Query: 254 NYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLSTYNSKLADESIQV 313
           NYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNG GLSTYNSKLADES+QV
Sbjct: 241 NYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGLGLSTYNSKLADESMQV 300

Query: 314 NAAPQRAIPIK 324
           NAAPQRAIPIK
Sbjct: 301 NAAPQRAIPIK 311

[Close]

BLAST of Cp4.1LG17g08050 vs. ExPASy TrEMBL
Match: A0A6J1L019 (Nuclear transcription factor Y subunit OS=Cucurbita maxima OX=3661 GN=LOC111497856 PE=3 SV=1)

HSP 1 Score: 577 bits (1487), Expect = 6.02e-207
Identity = 286/296 (96.62%), Postives = 289/296 (97.64%), Query Frame = 0


Query: 1   MFFPLGWQNKFQTMPSKPGIVEQEAADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTS 60
           MFF LGWQNKFQTMPSKPGIVEQE  DGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTS
Sbjct: 1   MFFLLGWQNKFQTMPSKPGIVEQEVVDGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTS 60

Query: 61  SAEYLNVTVTSAAMLSQANDENTGQEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVL 120
           SAEYL+VTVTSAAMLSQANDENTG+EVQHLKYIPFSTSPPVGERLDPNSQMEL+GHSIVL
Sbjct: 61  SAEYLDVTVTSAAMLSQANDENTGKEVQHLKYIPFSTSPPVGERLDPNSQMELIGHSIVL 120

Query: 121 TSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQ 180
           TSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQ
Sbjct: 121 TSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQ 180

Query: 181 SRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSS 240
           SRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINS 
Sbjct: 181 SRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSG 240

Query: 241 INHVSEPVSEGRSNYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNG 296
           INHVSEPVSE  SNYMVANENGMKDTLD QQKEDKEFMPQNMQITHAFFNGGKSNG
Sbjct: 241 INHVSEPVSESGSNYMVANENGMKDTLDGQQKEDKEFMPQNMQITHAFFNGGKSNG 296

[Close]

BLAST of Cp4.1LG17g08050 vs. ExPASy TrEMBL
Match: A0A6J1KWS3 (Nuclear transcription factor Y subunit OS=Cucurbita maxima OX=3661 GN=LOC111497856 PE=3 SV=1)

HSP 1 Score: 551 bits (1419), Expect = 8.56e-197
Identity = 274/283 (96.82%), Postives = 277/283 (97.88%), Query Frame = 0


Query: 14  MPSKPGIVEQEAADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTSSAEYLNVTVTSAA 73
           MPSKPGIVEQE  DGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTSSAEYL+VTVTSAA
Sbjct: 1   MPSKPGIVEQEVVDGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTSSAEYLDVTVTSAA 60

Query: 74  MLSQANDENTGQEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVLTSYPFSDAQCCQM 133
           MLSQANDENTG+EVQHLKYIPFSTSPPVGERLDPNSQMEL+GHSIVLTSYPFSDAQCCQM
Sbjct: 61  MLSQANDENTGKEVQHLKYIPFSTSPPVGERLDPNSQMELIGHSIVLTSYPFSDAQCCQM 120

Query: 134 LTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELEKKVIK 193
           LTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELEKKVIK
Sbjct: 121 LTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELEKKVIK 180

Query: 194 SRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSSINHVSEPVSEGRS 253
           SRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINS INHVSEPVSE  S
Sbjct: 181 SRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSGINHVSEPVSESGS 240

Query: 254 NYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNG 296
           NYMVANENGMKDTLD QQKEDKEFMPQNMQITHAFFNGGKSNG
Sbjct: 241 NYMVANENGMKDTLDGQQKEDKEFMPQNMQITHAFFNGGKSNG 283

[Close]

BLAST of Cp4.1LG17g08050 vs. ExPASy TrEMBL
Match: A0A0A0K612 (Nuclear transcription factor Y subunit OS=Cucumis sativus OX=3659 GN=Csa_7G428130 PE=3 SV=1)

HSP 1 Score: 489 bits (1260), Expect = 2.82e-172
Identity = 255/321 (79.44%), Postives = 272/321 (84.74%), Query Frame = 0


Query: 14  MPSKPGIVEQEAADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTSSAEYLNVTVTSAA 73
           MPS+P  V+Q+ ADGAKYLLQSTK+SEPWWHGVGNNTI  EDA KTSSAEYLNVTV S A
Sbjct: 2   MPSEPENVDQQVADGAKYLLQSTKFSEPWWHGVGNNTIAGEDAAKTSSAEYLNVTVASGA 61

Query: 74  MLSQANDENTGQEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVLTSYPFSDAQCCQM 133
              QANDEN G+EVQHLKYIPFSTSPPVGE LD NSQMELVGHSIVLTSYPFSDAQ CQM
Sbjct: 62  TQPQANDENIGKEVQHLKYIPFSTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQM 121

Query: 134 LTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELEKKVIK 193
           LTSYGPQ TLP  YGLHHARMPLPLEME EPVYVNAKQYHGILRRRQSRAKAELEKKVIK
Sbjct: 122 LTSYGPQATLPRIYGLHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIK 181

Query: 194 SRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSSINHVSEPVSEGRS 253
           SRKPYLHESRHLHAMRRARGSGGRFLNTKKPN+V+SN   EEDI+S  NH ++PVSE  S
Sbjct: 182 SRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVMSNTNREEDIDSVANHSTKPVSEAVS 241

Query: 254 NYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLSTYNSKLAD----- 313
            YMV NE G+K+TLD+Q +E   FM QNMQITHAFFNG KSN HGLSTY+S+L D     
Sbjct: 242 KYMVTNEKGIKNTLDEQSRE---FMTQNMQITHAFFNG-KSNVHGLSTYSSQLGDVEGGH 301

Query: 314 -----ESIQVNAAPQRAIPIK 324
                ES+QVN APQRAIPIK
Sbjct: 302 LDQPHESMQVNGAPQRAIPIK 318

[Close]

BLAST of Cp4.1LG17g08050 vs. TAIR 10
Match: AT3G20910.1 (nuclear factor Y, subunit A9 )

HSP 1 Score: 132.9 bits (333), Expect = 4.7e-31
Identity = 93/230 (40.43%), Postives = 126/230 (54.78%), Query Frame = 0


Query: 41  PWWHGVGNNTITDEDATKTSSAEYLNVTVTSAAMLSQANDENTGQEVQHLKYIPFSTSP- 100
           PW                  S++ + + + S    S +N +NT  +   +     +TSP 
Sbjct: 34  PWHRAAAACNANSSVEAGDKSSKSIALALESNGSKSPSNRDNTVNKESQV-----TTSPQ 93

Query: 101 PVGERLDPNSQM------------ELVGHSI-VLTSYPFSDAQCCQMLTSYG--PQTTLP 160
             G+  D N +             +LVGH++   +S P+ D     ++ +YG  P   +P
Sbjct: 94  SAGDYSDKNQESLHHGITQPPPHPQLVGHTVGWASSNPYQDPYYAGVMGAYGHHPLGFVP 153

Query: 161 HFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRH 220
            + G+ H+RMPLP EM  EPV+VNAKQY  ILRRRQ+RAKAELEKK+IKSRKPYLHESRH
Sbjct: 154 -YGGMPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKSRKPYLHESRH 213

Query: 221 LHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSSINHVSEPVSEGRSN 255
            HAMRR RG+GGRF   KK N+  S +  EE  N    HV++  S   S+
Sbjct: 214 QHAMRRPRGTGGRF--AKKTNTEASKRKAEEKSN---GHVTQSPSSSNSD 252

[Close]

BLAST of Cp4.1LG17g08050 vs. TAIR 10
Match: AT5G12840.2 (nuclear factor Y, subunit A1 )

HSP 1 Score: 132.1 bits (331), Expect = 8.0e-31
Identity = 92/226 (40.71%), Postives = 114/226 (50.44%), Query Frame = 0


Query: 14  MPSKPGIVEQEAADGAKYLLQSTKYSEPWW----HGVGNNTITDEDATKTSSAEYLNVT- 73
           M SKPG   +E  +    + Q   Y+EPWW     GV          + +SS +  N + 
Sbjct: 1   MQSKPGRENEEEVNNHHAVQQPMMYAEPWWKNNSFGVVPQARPSGIPSNSSSLDCPNGSE 60

Query: 74  ---VTSAAMLSQANDENTGQEVQHLKYIPFSTSPPVGERLDPNSQM------------EL 133
              V SA+     N EN G            +     E  DP   +            EL
Sbjct: 61  SNDVHSASEDGALNGENDGTWKDSQAATSSRSDNHGMEGNDPALSIRNMHDQPLVQPPEL 120

Query: 134 VGHSIVLTSYPFSDAQCCQMLTSYG-PQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQY 193
           VGH I     P+ D     ++ +YG  Q     + G+   R  LPL+M  EPVYVNAKQY
Sbjct: 121 VGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVNAKQY 180

Query: 194 HGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRF 219
            GILRRR++RAKAELE+KVI+ RKPYLHESRH HAMRRAR SGGRF
Sbjct: 181 EGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRF 226

[Close]

BLAST of Cp4.1LG17g08050 vs. TAIR 10
Match: AT5G12840.4 (nuclear factor Y, subunit A1 )

HSP 1 Score: 132.1 bits (331), Expect = 8.0e-31
Identity = 92/226 (40.71%), Postives = 114/226 (50.44%), Query Frame = 0


Query: 14  MPSKPGIVEQEAADGAKYLLQSTKYSEPWW----HGVGNNTITDEDATKTSSAEYLNVT- 73
           M SKPG   +E  +    + Q   Y+EPWW     GV          + +SS +  N + 
Sbjct: 1   MQSKPGRENEEEVNNHHAVQQPMMYAEPWWKNNSFGVVPQARPSGIPSNSSSLDCPNGSE 60

Query: 74  ---VTSAAMLSQANDENTGQEVQHLKYIPFSTSPPVGERLDPNSQM------------EL 133
              V SA+     N EN G            +     E  DP   +            EL
Sbjct: 61  SNDVHSASEDGALNGENDGTWKDSQAATSSRSDNHGMEGNDPALSIRNMHDQPLVQPPEL 120

Query: 134 VGHSIVLTSYPFSDAQCCQMLTSYG-PQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQY 193
           VGH I     P+ D     ++ +YG  Q     + G+   R  LPL+M  EPVYVNAKQY
Sbjct: 121 VGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVNAKQY 180

Query: 194 HGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRF 219
            GILRRR++RAKAELE+KVI+ RKPYLHESRH HAMRRAR SGGRF
Sbjct: 181 EGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRF 226

[Close]

BLAST of Cp4.1LG17g08050 vs. TAIR 10
Match: AT5G12840.1 (nuclear factor Y, subunit A1 )

HSP 1 Score: 130.6 bits (327), Expect = 2.3e-30
Identity = 93/227 (40.97%), Postives = 115/227 (50.66%), Query Frame = 0


Query: 14  MPSKPGIVEQEAADGAKYLLQSTKYSEPWW----HGVGNNTITDEDATKTSSAEYLNVT- 73
           M SKPG   +E  +    + Q   Y+EPWW     GV          + +SS +  N + 
Sbjct: 1   MQSKPGRENEEEVNNHHAVQQPMMYAEPWWKNNSFGVVPQARPSGIPSNSSSLDCPNGSE 60

Query: 74  ---VTSAAMLSQANDENTGQEVQHLKYIPFSTSPPVG-ERLDPNSQM------------E 133
              V SA+     N EN G            +    G E  DP   +            E
Sbjct: 61  SNDVHSASEDGALNGENDGTWKDSQAATSSRSVDNHGMEGNDPALSIRNMHDQPLVQPPE 120

Query: 134 LVGHSIVLTSYPFSDAQCCQMLTSYG-PQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQ 193
           LVGH I     P+ D     ++ +YG  Q     + G+   R  LPL+M  EPVYVNAKQ
Sbjct: 121 LVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVNAKQ 180

Query: 194 YHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRF 219
           Y GILRRR++RAKAELE+KVI+ RKPYLHESRH HAMRRAR SGGRF
Sbjct: 181 YEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRF 227

[Close]

BLAST of Cp4.1LG17g08050 vs. TAIR 10
Match: AT5G12840.3 (nuclear factor Y, subunit A1 )

HSP 1 Score: 130.6 bits (327), Expect = 2.3e-30
Identity = 93/227 (40.97%), Postives = 115/227 (50.66%), Query Frame = 0


Query: 14  MPSKPGIVEQEAADGAKYLLQSTKYSEPWW----HGVGNNTITDEDATKTSSAEYLNVT- 73
           M SKPG   +E  +    + Q   Y+EPWW     GV          + +SS +  N + 
Sbjct: 1   MQSKPGRENEEEVNNHHAVQQPMMYAEPWWKNNSFGVVPQARPSGIPSNSSSLDCPNGSE 60

Query: 74  ---VTSAAMLSQANDENTGQEVQHLKYIPFSTSPPVG-ERLDPNSQM------------E 133
              V SA+     N EN G            +    G E  DP   +            E
Sbjct: 61  SNDVHSASEDGALNGENDGTWKDSQAATSSRSVDNHGMEGNDPALSIRNMHDQPLVQPPE 120

Query: 134 LVGHSIVLTSYPFSDAQCCQMLTSYG-PQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQ 193
           LVGH I     P+ D     ++ +YG  Q     + G+   R  LPL+M  EPVYVNAKQ
Sbjct: 121 LVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVNAKQ 180

Query: 194 YHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRF 219
           Y GILRRR++RAKAELE+KVI+ RKPYLHESRH HAMRRAR SGGRF
Sbjct: 181 YEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRF 227

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g08050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q945M9	6.6e-30	40.43	Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9LXV5	3.3e-29	40.97	Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q8VY64	6.4e-25	40.10	Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q8LFU0	6.4e-25	35.02	Nuclear transcription factor Y subunit A-10 OS=Arabidopsis thaliana OX=3702 GN=N...	[more]
Q84JP1	1.4e-24	58.49	Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of Cp4.1LG17g08050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515220.1	3.68e-236	100.00	nuclear transcription factor Y subunit A-4-like isoform X1 [Cucurbita pepo subsp...	[more]
KAG7025650.1	2.78e-231	98.15	Nuclear transcription factor Y subunit A-9 [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022960498.1	6.28e-228	97.22	nuclear transcription factor Y subunit A-1-like isoform X1 [Cucurbita moschata] ...	[more]
XP_023515221.1	1.76e-224	100.00	nuclear transcription factor Y subunit A-4-like isoform X2 [Cucurbita pepo subsp...	[more]
KAG6593299.1	2.51e-223	98.42	Nuclear transcription factor Y subunit A-9, partial [Cucurbita argyrosperma subs...	[more]

BLAST of Cp4.1LG17g08050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HB71	3.04e-228	97.22	Nuclear transcription factor Y subunit OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1H7S4	4.34e-218	97.43	Nuclear transcription factor Y subunit OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1L019	6.02e-207	96.62	Nuclear transcription factor Y subunit OS=Cucurbita maxima OX=3661 GN=LOC1114978...	[more]
A0A6J1KWS3	8.56e-197	96.82	Nuclear transcription factor Y subunit OS=Cucurbita maxima OX=3661 GN=LOC1114978...	[more]
A0A0A0K612	2.82e-172	79.44	Nuclear transcription factor Y subunit OS=Cucumis sativus OX=3659 GN=Csa_7G42813...	[more]

BLAST of Cp4.1LG17g08050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20910.1	4.7e-31	40.43	nuclear factor Y, subunit A9	[more]
AT5G12840.2	8.0e-31	40.71	nuclear factor Y, subunit A1	[more]
AT5G12840.4	8.0e-31	40.71	nuclear factor Y, subunit A1	[more]
AT5G12840.1	2.3e-30	40.97	nuclear factor Y, subunit A1	[more]
AT5G12840.3	2.3e-30	40.97	nuclear factor Y, subunit A1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001289	Nuclear transcription factor Y subunit A	PRINTS	PR00616	CCAATSUBUNTB	coord: 164..186 score: 77.29 coord: 195..218 score: 81.71
IPR001289	Nuclear transcription factor Y subunit A	SMART	SM00521	cbf3	coord: 160..221 e-value: 5.4E-37 score: 138.9
IPR001289	Nuclear transcription factor Y subunit A	PFAM	PF02045	CBFB_NFYA	coord: 163..218 e-value: 1.2E-26 score: 93.1
IPR001289	Nuclear transcription factor Y subunit A	PANTHER	PTHR12632	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	coord: 68..306
IPR001289	Nuclear transcription factor Y subunit A	PROSITE	PS51152	NFYA_HAP2_2	coord: 161..221 score: 38.397755
None	No IPR available	GENE3D	6.10.250.2430		coord: 162..222 e-value: 2.5E-31 score: 109.8
None	No IPR available	PANTHER	PTHR12632:SF57	TRANSCRIPTION FACTOR Y SUBUNIT A-1, PUTATIVE-RELATED	coord: 68..306
IPR018362	CCAAT-binding factor, conserved site	PROSITE	PS00686	NFYA_HAP2_1	coord: 166..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g08050.1	Cp4.1LG17g08050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity