Cp4.1LG17g07960 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g07960
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein BPS1, chloroplastic-like
Location	Cp4.1LG17: 5660583 .. 5663607 (+)
RNA-Seq Expression	Cp4.1LG17g07960
Synteny	Cp4.1LG17g07960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCTTTTGCTTCAATCCTTCAACAAGCACTGTTCCAAGTTCTACAATCATCACCATAGCCGCCATGGAAACAGAGCTTCGTTCTCTGTTTCTTGTCTTCAGGCCTTCGATGCTGAGGTATCGTCTTGTCTGAATCAACTCCTGTTGTCGAGCTCTGATTCGACAACGTTGTCTTTTCATTGGCTTCTTCAGCTTCTTCAAGCTCTGCCTGTTCTCCATCGGGCGTTTGCCAAATTGGTTGTCGATTTAGACTGCCCTGTTGCGAAATGGGGCGCCGATTTGGTTGATGGGTATTTGAATTATAGTTTAAATTTGCTTGATCTTCTTAATTCCGTCAGTTTTTCTTTATCCCAATTGGGGAATTCGCGGCTTTCCCTTGCTTATGCTCTGAGTTTGGTTCGGAGCTCGCCGTTAATGGCGGTTGCCCGTCTGAACCCCATTGTTATGAAGAGGAATTTTATGGGATTGGAAAACAGAGGAATTGTGGTTGATCGGAAGAAGGGTTACTCCGGCGAGGAATGGGCGATTGAGAGAGCTTTGGCGACAATGATGGGAATTGGGTATTGGGTCTGTGGGGTTGTGATTTCTGGTTGCGAGGGAGACTCGACAGCGTATTTGGAGATGAGAAGATTAGCCGCCGGCGTGGTGGTTCCGGCGTTTAAAGAGTTGGATTCGGTAGTTTCCAAGATGGGGAGTGTGCCGGAGGAGGTGAAGGAGGTGAACTGTGCGGCGAAGGAGGTCGTTGGCAGCGGTGGCGGCGATGGAGAGGCGGCGGAGGAGATGAGGAGGAGATTAGAGAGATTGGAGAAGGCGGTGGAGAGATTGGTGAAGGAGGTGGATGGAAGATTCTCGGAGGTTCTCGACGGAAGAAGCCGATTGCTTGATGCTTTCAGACAACCCAAACATTAAATCGAGGATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCTCTTCTGTTTGATGTTTGGTTGAAATTGTAAAATATTATACAGAGATAAAAAATGTTTGTACCAATAAATCCCAAAATTGGTGAACTCAAAGTAAATAAATAAACTTGGTATACTCAAATTCAATAGTTATATTAAGTTCGTTATGTTCTTATGTTCGAGATTTGATGAATGTAAATAGCATGTAATATCATACTAAGTTCTGTGGTAATGGCTCGTTTATTTTCATGAGGCACTATGGCGAGCGAGATTCAATCACACTATAACGACTTAGATCCACCACTACTTGATATTGTCCTCTTTGGACTTTCCCTTTCGGGCTTTCCCTCAAGACTTTAAAATGCGTTTGCTACGAGAAGGTTCTCACACCCTTATAAATGGTGGTTTGTTCTCCTCCCCAACCAATGTGGGACATCACAATCCACCCTCCTTCGGAGCCCAGCGTCTTCGCTGGCACTCTTTCCTTCCTCCAATCGATGTGGGACCGCCCCCAAATCCACCCTACCACACCACCTCGTGTCTACCCCCCTTTGGGGAACAACGAGAAGGTTGGCACATCGTCCGATGTCTGGCTCTGATACCATTTGTAACGACCCAGATCCACCGCTAGCAGATATTGTCATCTTTGGGCTTTCCCTTTCGAGCTTCCCCTAAAGGCTTTATAACGCGTCTTCTAGGGGAAGGTTTCCCCATCCTTATCAATGGTGGTTTGTTCTCCTCCCAGCCAATGTGGGACATCACACCCACCGACTAGATATAAATTATCACGAAGTAAAAAATCTTTAAGACGAAAGGCTTAGTAAAGTCAAATTGGTTGGAGAGAAATCATAGACGAAAACAAGGAATCCCATCAAGGAGAAATCATTCCCAGTTCTCGTGATCGAACACTAGCAAGTATTAAGTGAATATTTCGTACTTGAAATGATCTAACATTAATGCCCGAGTTTCCTTACAACATGCAATTAAACATTTTGAAATACCAAGACCATGGTCTATCTAGTTATCACGGAAAACAGAATGATTTATAATTACATTATTTTGGGATAAACTATTTATTTAACCTCGTCCTATCTCGTAATTTTTCTAACGTAAAAAACAAGATTACAAGCTCATATGGTGAAAAAGACTATTCTCTTTTCATTTCCAGCTACCTTCCAAACACAAAATTTGAATAAAATCCTCATCAAACAAACAAAGGTAAGCACTTCAAAATCAAACTTTGAAGTTTCCTATTCAAATAAGAGAAGGGAAAGGAAAAATGATAATGAACAAGAGCCTCAAACATTCCATCCAACAACCGTCCCGACCATTAAATGCTCAATATCTTGTACGTGTGGCTCAAGTTTACGTGTACGTGAAGCTCAAACTTTTAAGGTAAACAAGAAAAAAACAGCACAAAACATGGCCAAAGACAGTGATCTCATCTGTTTTCTGTGTATCAAACAAGCTTTTCTCCGCCTAGACTCAATTATGTGTTAATTTCCACATCTTTTATGTCCTTTACAAGTAATAACATTATTTTACAACAATAATGCATGATCAAGCTTGTAAAATAGGATGGATGCAGCAATGCAAATGATACAAGAAGGTATGTAAGGTACCTTCTTTGTTTCTATAACACGTTTGTGTTCAACGGGTATGGGGCTGCGTTATTAAGATTCGGGTCGTCCATCTTTTGACACACGTATATGAAGTGAGAATCCGGGTCTTCCATGATGAAGCTCGGTGATAGCAAGCCCTTGTCGGTTAGGGGCACTGGTTCTAGATATGATTTCTCTGGTGTGCTGCACCCTTCCGGCCTTTCAAATCCTGGCCTTGCTGTAGAAAGTAATGGATGA

mRNA sequence

ATGCTGCTTTTGCTTCAATCCTTCAACAAGCACTGTTCCAAGTTCTACAATCATCACCATAGCCGCCATGGAAACAGAGCTTCGTTCTCTGTTTCTTGTCTTCAGGCCTTCGATGCTGAGGTATCGTCTTGTCTGAATCAACTCCTGTTGTCGAGCTCTGATTCGACAACGTTGTCTTTTCATTGGCTTCTTCAGCTTCTTCAAGCTCTGCCTGTTCTCCATCGGGCGTTTGCCAAATTGGTTGTCGATTTAGACTGCCCTGTTGCGAAATGGGGCGCCGATTTGGTTGATGGGTATTTGAATTATAGTTTAAATTTGCTTGATCTTCTTAATTCCGTCAGTTTTTCTTTATCCCAATTGGGGAATTCGCGGCTTTCCCTTGCTTATGCTCTGAGTTTGGTTCGGAGCTCGCCGTTAATGGCGGTTGCCCGTCTGAACCCCATTGTTATGAAGAGGAATTTTATGGGATTGGAAAACAGAGGAATTGTGGTTGATCGGAAGAAGGGTTACTCCGGCGAGGAATGGGCGATTGAGAGAGCTTTGGCGACAATGATGGGAATTGGGTATTGGGTCTGTGGGGTTGTGATTTCTGGTTGCGAGGGAGACTCGACAGCGTATTTGGAGATGAGAAGATTAGCCGCCGGCGTGGTGGTTCCGGCGTTTAAAGAGTTGGATTCGGTAGTTTCCAAGATGGGGAGTGTGCCGGAGGAGGTGAAGGAGGTGAACTGTGCGGCGAAGGAGGTCGTTGGCAGCGGTGGCGGCGATGGAGAGGCGGCGGAGGAGATGAGGAGGAGATTAGAGAGATTGGAGAAGGCGGTGGAGAGATTGCTCGGTGATAGCAAGCCCTTGTCGGTTAGGGGCACTGGTTCTAGATATGATTTCTCTGGTGTGCTGCACCCTTCCGGCCTTTCAAATCCTGGCCTTGCTGTAGAAAGTAATGGATGA

Coding sequence (CDS)

ATGCTGCTTTTGCTTCAATCCTTCAACAAGCACTGTTCCAAGTTCTACAATCATCACCATAGCCGCCATGGAAACAGAGCTTCGTTCTCTGTTTCTTGTCTTCAGGCCTTCGATGCTGAGGTATCGTCTTGTCTGAATCAACTCCTGTTGTCGAGCTCTGATTCGACAACGTTGTCTTTTCATTGGCTTCTTCAGCTTCTTCAAGCTCTGCCTGTTCTCCATCGGGCGTTTGCCAAATTGGTTGTCGATTTAGACTGCCCTGTTGCGAAATGGGGCGCCGATTTGGTTGATGGGTATTTGAATTATAGTTTAAATTTGCTTGATCTTCTTAATTCCGTCAGTTTTTCTTTATCCCAATTGGGGAATTCGCGGCTTTCCCTTGCTTATGCTCTGAGTTTGGTTCGGAGCTCGCCGTTAATGGCGGTTGCCCGTCTGAACCCCATTGTTATGAAGAGGAATTTTATGGGATTGGAAAACAGAGGAATTGTGGTTGATCGGAAGAAGGGTTACTCCGGCGAGGAATGGGCGATTGAGAGAGCTTTGGCGACAATGATGGGAATTGGGTATTGGGTCTGTGGGGTTGTGATTTCTGGTTGCGAGGGAGACTCGACAGCGTATTTGGAGATGAGAAGATTAGCCGCCGGCGTGGTGGTTCCGGCGTTTAAAGAGTTGGATTCGGTAGTTTCCAAGATGGGGAGTGTGCCGGAGGAGGTGAAGGAGGTGAACTGTGCGGCGAAGGAGGTCGTTGGCAGCGGTGGCGGCGATGGAGAGGCGGCGGAGGAGATGAGGAGGAGATTAGAGAGATTGGAGAAGGCGGTGGAGAGATTGCTCGGTGATAGCAAGCCCTTGTCGGTTAGGGGCACTGGTTCTAGATATGATTTCTCTGGTGTGCTGCACCCTTCCGGCCTTTCAAATCCTGGCCTTGCTGTAGAAAGTAATGGATGA

Protein sequence

MLLLLQSFNKHCSKFYNHHHSRHGNRASFSVSCLQAFDAEVSSCLNQLLLSSSDSTTLSFHWLLQLLQALPVLHRAFAKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQLGNSRLSLAYALSLVRSSPLMAVARLNPIVMKRNFMGLENRGIVVDRKKGYSGEEWAIERALATMMGIGYWVCGVVISGCEGDSTAYLEMRRLAAGVVVPAFKELDSVVSKMGSVPEEVKEVNCAAKEVVGSGGGDGEAAEEMRRRLERLEKAVERLLGDSKPLSVRGTGSRYDFSGVLHPSGLSNPGLAVESNG

Homology

[Close]

BLAST of Cp4.1LG17g07960 vs. ExPASy Swiss-Prot
Match: Q9LMM6 (Protein BPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BPS1 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.8e-07
Identity = 38/119 (31.93%), Postives = 65/119 (54.62%), Query Frame = 0


Query: 21  SRHGNRASFSVSCLQAFDAEVSSCLNQLLLSSSDSTTLSFHWLLQLLQALPVLHRAFAKL 80
           S++   +S  +  L  F+  ++S +++ L+    S  L+  W+ Q +++L   H     L
Sbjct: 23  SKNSVLSSKLLPLLNNFETNLASSISK-LVPKEKSDILTVSWMKQAMESLCETHNGIKTL 82

Query: 81  VVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQLGNSRLSLAYAL-SLVRSSP 139
           + DL+ PV+ W    VD YL+ S+ LLDL N+ S  L++L    L L +AL +L  +SP
Sbjct: 83  ITDLELPVSDWEDKWVDVYLDISVKLLDLCNAFSSELTRLNQGHLLLQFALHNLEANSP 140

[Close]

BLAST of Cp4.1LG17g07960 vs. ExPASy Swiss-Prot
Match: A2Z9A6 (UPF0496 protein 4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_033149 PE=3 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 9.9e-07
Identity = 35/86 (40.70%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 51  SSSDSTTLSFHWLLQLLQALPVLHRAFAKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLL 110
           ++SD  TLS  W+   +  L  LH   A L+ DL+ PV+ W    VD YLN S+ LLD+ 
Sbjct: 54  AASDVLTLS--WMRLAVDCLSELHTNIANLITDLELPVSDWDDKWVDIYLNSSVKLLDIC 113

Query: 111 NSVSFSLSQLGNSRLSLAYALSLVRS 137
            ++S  LS+L   +L L YAL ++ S
Sbjct: 114 IALSSELSRLDQGQLLLQYALHVLGS 137

[Close]

BLAST of Cp4.1LG17g07960 vs. ExPASy Swiss-Prot
Match: Q337C0 (UPF0496 protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0513300 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 9.9e-07
Identity = 35/86 (40.70%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 51  SSSDSTTLSFHWLLQLLQALPVLHRAFAKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLL 110
           ++SD  TLS  W+   +  L  LH   A L+ DL+ PV+ W    VD YLN S+ LLD+ 
Sbjct: 54  AASDVLTLS--WMRLAVDCLSELHTNIANLITDLELPVSDWDDKWVDIYLNSSVKLLDIC 113

Query: 111 NSVSFSLSQLGNSRLSLAYALSLVRS 137
            ++S  LS+L   +L L YAL ++ S
Sbjct: 114 IALSSELSRLDQGQLLLQYALHVLGS 137

[Close]

BLAST of Cp4.1LG17g07960 vs. NCBI nr
Match: XP_023514538.1 (protein BPS1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 533 bits (1373), Expect = 1.40e-189
Identity = 276/277 (99.64%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MLLLLQSFNKHCSKFYNHHHSRHGNRASFSVSCLQAFDAEVSSCLNQLLLSSSDSTTLSF 60
           MLLLLQSFNKHCSKFYNHHHSRHGNRASFSVSCLQAFDAEVSSCLNQLLLSSSDSTTLSF
Sbjct: 1   MLLLLQSFNKHCSKFYNHHHSRHGNRASFSVSCLQAFDAEVSSCLNQLLLSSSDSTTLSF 60

Query: 61  HWLLQLLQALPVLHRAFAKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQL 120
           HWLLQLLQALPVLHRAFAKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQL
Sbjct: 61  HWLLQLLQALPVLHRAFAKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQL 120

Query: 121 GNSRLSLAYALSLVRSSPLMAVARLNPIVMKRNFMGLENRGIVVDRKKGYSGEEWAIERA 180
           GNSRLSLAYALSLVRSSPLMAVARLNPIVMKRNFMGLENRGIVVDRKKGYSGEEWAIERA
Sbjct: 121 GNSRLSLAYALSLVRSSPLMAVARLNPIVMKRNFMGLENRGIVVDRKKGYSGEEWAIERA 180

Query: 181 LATMMGIGYWVCGVVISGCEGDSTAYLEMRRLAAGVVVPAFKELDSVVSKMGSVPEEVKE 240
           LATMMGIGYWVCGVVISGCEGDSTAYLEMRRLAAGVVVPAFKELDSVVSKMGSVPEEVKE
Sbjct: 181 LATMMGIGYWVCGVVISGCEGDSTAYLEMRRLAAGVVVPAFKELDSVVSKMGSVPEEVKE 240

Query: 241 VNCAAKEVVGSGGGDGEAAEEMRRRLERLEKAVERLL 277
           VNCAAKEVVGSGGGDGEAAEEMRRRLERLEKAVERL+
Sbjct: 241 VNCAAKEVVGSGGGDGEAAEEMRRRLERLEKAVERLV 277

[Close]

BLAST of Cp4.1LG17g07960 vs. NCBI nr
Match: KAG6593278.1 (Protein BPS1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 522 bits (1345), Expect = 2.59e-185
Identity = 269/277 (97.11%), Postives = 273/277 (98.56%), Query Frame = 0


Query: 1   MLLLLQSFNKHCSKFYNHHHSRHGNRASFSVSCLQAFDAEVSSCLNQLLLSSSDSTTLSF 60
           MLLLLQSFNKHCSKFYNHHHSRHGNRASFSVSCLQAFDAEVSSCLNQLLLSSSDSTTLSF
Sbjct: 1   MLLLLQSFNKHCSKFYNHHHSRHGNRASFSVSCLQAFDAEVSSCLNQLLLSSSDSTTLSF 60

Query: 61  HWLLQLLQALPVLHRAFAKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQL 120
           HWLLQLLQALPVLH+AFAKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQL
Sbjct: 61  HWLLQLLQALPVLHQAFAKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQL 120

Query: 121 GNSRLSLAYALSLVRSSPLMAVARLNPIVMKRNFMGLENRGIVVDRKKGYSGEEWAIERA 180
           GNSRLSLAYALSLVRSSPLMAVARL PIVMKRNFMGLENRGIVVDRKKGYSGEEWAIERA
Sbjct: 121 GNSRLSLAYALSLVRSSPLMAVARLKPIVMKRNFMGLENRGIVVDRKKGYSGEEWAIERA 180

Query: 181 LATMMGIGYWVCGVVISGCEGDSTAYLEMRRLAAGVVVPAFKELDSVVSKMGSVPEEVKE 240
           LATMMGIGYWVCGVVISGCEGDSTAY EMRRLAAGV VPAFKELDSVVSK G+VPEEVKE
Sbjct: 181 LATMMGIGYWVCGVVISGCEGDSTAYFEMRRLAAGVTVPAFKELDSVVSKKGNVPEEVKE 240

Query: 241 VNCAAKEVVGSGGGDGEAAEEMRRRLERLEKAVERLL 277
           VNCAAKEV+GSGGGDGEAAEEMRRRLERLEKAVERL+
Sbjct: 241 VNCAAKEVIGSGGGDGEAAEEMRRRLERLEKAVERLV 277

[Close]

BLAST of Cp4.1LG17g07960 vs. NCBI nr
Match: XP_022960422.1 (protein BPS1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 520 bits (1339), Expect = 2.12e-184
Identity = 268/277 (96.75%), Postives = 272/277 (98.19%), Query Frame = 0


Query: 1   MLLLLQSFNKHCSKFYNHHHSRHGNRASFSVSCLQAFDAEVSSCLNQLLLSSSDSTTLSF 60
           MLLLLQSFNKHCSKFYNHHHSRHGNRASFSVSCLQAFDAEVSSCLNQLLLSSSDSTTLSF
Sbjct: 1   MLLLLQSFNKHCSKFYNHHHSRHGNRASFSVSCLQAFDAEVSSCLNQLLLSSSDSTTLSF 60

Query: 61  HWLLQLLQALPVLHRAFAKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQL 120
           HWLLQLLQALPVLH+AFAKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQL
Sbjct: 61  HWLLQLLQALPVLHQAFAKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQL 120

Query: 121 GNSRLSLAYALSLVRSSPLMAVARLNPIVMKRNFMGLENRGIVVDRKKGYSGEEWAIERA 180
           GNSRLSLAYALSLVRSSPLMAVARL PIVMKRNFMGLENRGIV DRKKGYS EEWAIERA
Sbjct: 121 GNSRLSLAYALSLVRSSPLMAVARLKPIVMKRNFMGLENRGIVADRKKGYSSEEWAIERA 180

Query: 181 LATMMGIGYWVCGVVISGCEGDSTAYLEMRRLAAGVVVPAFKELDSVVSKMGSVPEEVKE 240
           LATMMGIGYWVCGVVISGCEGDSTAYLEMRRLAAGV VPAFKELDSVVSK G+VPEEVKE
Sbjct: 181 LATMMGIGYWVCGVVISGCEGDSTAYLEMRRLAAGVAVPAFKELDSVVSKKGNVPEEVKE 240

Query: 241 VNCAAKEVVGSGGGDGEAAEEMRRRLERLEKAVERLL 277
           VNCAAKEV+GSGGGDGEAAEEMRRRLERLEKAVERL+
Sbjct: 241 VNCAAKEVIGSGGGDGEAAEEMRRRLERLEKAVERLV 277

[Close]

BLAST of Cp4.1LG17g07960 vs. NCBI nr
Match: KAG7025628.1 (Protein BPS1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 515 bits (1326), Expect = 2.03e-182
Identity = 265/277 (95.67%), Postives = 271/277 (97.83%), Query Frame = 0


Query: 1   MLLLLQSFNKHCSKFYNHHHSRHGNRASFSVSCLQAFDAEVSSCLNQLLLSSSDSTTLSF 60
           MLLLLQSFNKHCSKFYNHHHSRHGNRASFSVSCLQAFDAEVSSCLNQLLLSSSDS TLSF
Sbjct: 1   MLLLLQSFNKHCSKFYNHHHSRHGNRASFSVSCLQAFDAEVSSCLNQLLLSSSDSRTLSF 60

Query: 61  HWLLQLLQALPVLHRAFAKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQL 120
           HWLLQLLQALPVLH+AFAKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQL
Sbjct: 61  HWLLQLLQALPVLHQAFAKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQL 120

Query: 121 GNSRLSLAYALSLVRSSPLMAVARLNPIVMKRNFMGLENRGIVVDRKKGYSGEEWAIERA 180
           GNSRLSLAYALSLVRSSPLMAVA L PIVMKRNFMG+ENRGIVVDRKKGYSGEEWAIERA
Sbjct: 121 GNSRLSLAYALSLVRSSPLMAVAHLKPIVMKRNFMGVENRGIVVDRKKGYSGEEWAIERA 180

Query: 181 LATMMGIGYWVCGVVISGCEGDSTAYLEMRRLAAGVVVPAFKELDSVVSKMGSVPEEVKE 240
           LATMMGIGYWVCGVVISGCEGDSTAYLEM RLAAGV VPAFK+LDSVVSK G+VPEEVKE
Sbjct: 181 LATMMGIGYWVCGVVISGCEGDSTAYLEMSRLAAGVTVPAFKQLDSVVSKKGNVPEEVKE 240

Query: 241 VNCAAKEVVGSGGGDGEAAEEMRRRLERLEKAVERLL 277
           VNCAAKEV+GSGGGDGEAAEEMRRRLERLEKAVERL+
Sbjct: 241 VNCAAKEVIGSGGGDGEAAEEMRRRLERLEKAVERLV 277

[Close]

BLAST of Cp4.1LG17g07960 vs. NCBI nr
Match: XP_023004871.1 (protein BPS1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 501 bits (1290), Expect = 6.39e-177
Identity = 262/278 (94.24%), Postives = 268/278 (96.40%), Query Frame = 0


Query: 1   MLLLLQSFNKHCSKFYNHHHSRHGNRASFSVSCLQAFDAEVSSCLNQLLLSSSDSTTLSF 60
           MLLLLQ+FNKHCSKFYNHHHSRHGNRASFSVS LQAFDAEVSSCLNQLLL SSDSTTLSF
Sbjct: 1   MLLLLQTFNKHCSKFYNHHHSRHGNRASFSVSLLQAFDAEVSSCLNQLLLLSSDSTTLSF 60

Query: 61  HWLLQLLQALPVLHRAFAKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQL 120
           HWLLQLLQALPVLHRAF+KLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQL
Sbjct: 61  HWLLQLLQALPVLHRAFSKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQL 120

Query: 121 GNSRLSLAYALSLVRSSPLMAVARLNPIVMKRNFMGLENRGIVVDRKKGYSGEEWAIERA 180
           GNSRLSLAYALSLVRSSPLMAVARL PIVMKRNF+GLENRGIVVDRKK  SGEEWAIE A
Sbjct: 121 GNSRLSLAYALSLVRSSPLMAVARLKPIVMKRNFVGLENRGIVVDRKKSCSGEEWAIESA 180

Query: 181 LATMMGIGYWVCGVVISGCEGDSTAYLEMRRLAAGVVVPAFKELDSVVSKMGSVPEEVKE 240
           L TMMGIGYWVCG+VISGCEGDSTAYLEMRRLAAGV VPAFKELDSVVSK G+VPEEVKE
Sbjct: 181 LVTMMGIGYWVCGIVISGCEGDSTAYLEMRRLAAGVTVPAFKELDSVVSKKGNVPEEVKE 240

Query: 241 VNCAAKEVVGSGGG-DGEAAEEMRRRLERLEKAVERLL 277
           VNCAAKEVVGSGGG DGEAAEEMRRRLERLEKAVERL+
Sbjct: 241 VNCAAKEVVGSGGGGDGEAAEEMRRRLERLEKAVERLV 278

[Close]

BLAST of Cp4.1LG17g07960 vs. ExPASy TrEMBL
Match: A0A6J1H7D5 (protein BPS1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111461156 PE=4 SV=1)

HSP 1 Score: 520 bits (1339), Expect = 1.03e-184
Identity = 268/277 (96.75%), Postives = 272/277 (98.19%), Query Frame = 0


Query: 1   MLLLLQSFNKHCSKFYNHHHSRHGNRASFSVSCLQAFDAEVSSCLNQLLLSSSDSTTLSF 60
           MLLLLQSFNKHCSKFYNHHHSRHGNRASFSVSCLQAFDAEVSSCLNQLLLSSSDSTTLSF
Sbjct: 1   MLLLLQSFNKHCSKFYNHHHSRHGNRASFSVSCLQAFDAEVSSCLNQLLLSSSDSTTLSF 60

Query: 61  HWLLQLLQALPVLHRAFAKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQL 120
           HWLLQLLQALPVLH+AFAKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQL
Sbjct: 61  HWLLQLLQALPVLHQAFAKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQL 120

Query: 121 GNSRLSLAYALSLVRSSPLMAVARLNPIVMKRNFMGLENRGIVVDRKKGYSGEEWAIERA 180
           GNSRLSLAYALSLVRSSPLMAVARL PIVMKRNFMGLENRGIV DRKKGYS EEWAIERA
Sbjct: 121 GNSRLSLAYALSLVRSSPLMAVARLKPIVMKRNFMGLENRGIVADRKKGYSSEEWAIERA 180

Query: 181 LATMMGIGYWVCGVVISGCEGDSTAYLEMRRLAAGVVVPAFKELDSVVSKMGSVPEEVKE 240
           LATMMGIGYWVCGVVISGCEGDSTAYLEMRRLAAGV VPAFKELDSVVSK G+VPEEVKE
Sbjct: 181 LATMMGIGYWVCGVVISGCEGDSTAYLEMRRLAAGVAVPAFKELDSVVSKKGNVPEEVKE 240

Query: 241 VNCAAKEVVGSGGGDGEAAEEMRRRLERLEKAVERLL 277
           VNCAAKEV+GSGGGDGEAAEEMRRRLERLEKAVERL+
Sbjct: 241 VNCAAKEVIGSGGGDGEAAEEMRRRLERLEKAVERLV 277

[Close]

BLAST of Cp4.1LG17g07960 vs. ExPASy TrEMBL
Match: A0A6J1KTC2 (protein BPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111498050 PE=4 SV=1)

HSP 1 Score: 501 bits (1290), Expect = 3.10e-177
Identity = 262/278 (94.24%), Postives = 268/278 (96.40%), Query Frame = 0


Query: 1   MLLLLQSFNKHCSKFYNHHHSRHGNRASFSVSCLQAFDAEVSSCLNQLLLSSSDSTTLSF 60
           MLLLLQ+FNKHCSKFYNHHHSRHGNRASFSVS LQAFDAEVSSCLNQLLL SSDSTTLSF
Sbjct: 1   MLLLLQTFNKHCSKFYNHHHSRHGNRASFSVSLLQAFDAEVSSCLNQLLLLSSDSTTLSF 60

Query: 61  HWLLQLLQALPVLHRAFAKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQL 120
           HWLLQLLQALPVLHRAF+KLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQL
Sbjct: 61  HWLLQLLQALPVLHRAFSKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQL 120

Query: 121 GNSRLSLAYALSLVRSSPLMAVARLNPIVMKRNFMGLENRGIVVDRKKGYSGEEWAIERA 180
           GNSRLSLAYALSLVRSSPLMAVARL PIVMKRNF+GLENRGIVVDRKK  SGEEWAIE A
Sbjct: 121 GNSRLSLAYALSLVRSSPLMAVARLKPIVMKRNFVGLENRGIVVDRKKSCSGEEWAIESA 180

Query: 181 LATMMGIGYWVCGVVISGCEGDSTAYLEMRRLAAGVVVPAFKELDSVVSKMGSVPEEVKE 240
           L TMMGIGYWVCG+VISGCEGDSTAYLEMRRLAAGV VPAFKELDSVVSK G+VPEEVKE
Sbjct: 181 LVTMMGIGYWVCGIVISGCEGDSTAYLEMRRLAAGVTVPAFKELDSVVSKKGNVPEEVKE 240

Query: 241 VNCAAKEVVGSGGG-DGEAAEEMRRRLERLEKAVERLL 277
           VNCAAKEVVGSGGG DGEAAEEMRRRLERLEKAVERL+
Sbjct: 241 VNCAAKEVVGSGGGGDGEAAEEMRRRLERLEKAVERLV 278

[Close]

BLAST of Cp4.1LG17g07960 vs. ExPASy TrEMBL
Match: A0A5D3CEU0 (UPF0496 protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00250 PE=4 SV=1)

HSP 1 Score: 352 bits (904), Expect = 1.58e-118
Identity = 193/280 (68.93%), Postives = 230/280 (82.14%), Query Frame = 0


Query: 1   MLLLLQSFNKHCSKFYNHHHSRHGNR-ASFSVSCLQAFDAEVSSCLNQLLLSSSDSTTLS 60
           M LLLQ+FNK CSK  N H +RHG++ ASFS+S L AF+ +VS+CLN LLLS+S S  LS
Sbjct: 1   MPLLLQTFNKFCSKLDNRHPNRHGSKLASFSLSRLHAFEDDVSACLNHLLLSTSASKPLS 60

Query: 61  FHWLLQLLQAL-PVLHRAFAKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLS 120
           FH+LLQLLQ L P +H++FAKLVVDL+ PV +W ADLVDGYLNYSLNLLDLLNS+SFSL+
Sbjct: 61  FHYLLQLLQGLLPTIHQSFAKLVVDLEYPVGRWRADLVDGYLNYSLNLLDLLNSISFSLT 120

Query: 121 QLGNSRLSLAYALSLVRSSPLMAVARLNPIVMKRNFMGLENRGIVVDRKKGYSGEEWAIE 180
           QLGNSR+SL+YALSL++SSP MAV+RL PI +KR   GLE RG V D KKG SGEE AIE
Sbjct: 121 QLGNSRVSLSYALSLIQSSPAMAVSRLKPIALKRYSEGLEIRGNVKDLKKGCSGEERAIE 180

Query: 181 RALATMMGIGYWVCGVVISGCEGDSTAYLEMRRLAAGVVVPAFKELDSVVSKM----GSV 240
           +ALATM GIGYW+CG+V+SGCEGD+TAYLEMRRLA+GV VPAFK LDSV+S +    GSV
Sbjct: 181 KALATMEGIGYWICGIVLSGCEGDATAYLEMRRLASGVTVPAFKALDSVISAVVAGKGSV 240

Query: 241 PEEVKEVNCAAKEVVGSGGGDGEAAEEMRRRLERLEKAVE 274
           PEEV+EVN A + ++   GG GEA EEMR+R+ RLEK VE
Sbjct: 241 PEEVEEVNVAVEMII---GGSGEAVEEMRKRMGRLEKTVE 277

[Close]

BLAST of Cp4.1LG17g07960 vs. ExPASy TrEMBL
Match: A0A1S4E356 (UPF0496 protein 4-like OS=Cucumis melo OX=3656 GN=LOC107991802 PE=4 SV=1)

HSP 1 Score: 352 bits (904), Expect = 1.58e-118
Identity = 193/280 (68.93%), Postives = 230/280 (82.14%), Query Frame = 0


Query: 1   MLLLLQSFNKHCSKFYNHHHSRHGNR-ASFSVSCLQAFDAEVSSCLNQLLLSSSDSTTLS 60
           M LLLQ+FNK CSK  N H +RHG++ ASFS+S L AF+ +VS+CLN LLLS+S S  LS
Sbjct: 1   MPLLLQTFNKFCSKLDNRHPNRHGSKLASFSLSRLHAFEDDVSACLNHLLLSTSASKPLS 60

Query: 61  FHWLLQLLQAL-PVLHRAFAKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLS 120
           FH+LLQLLQ L P +H++FAKLVVDL+ PV +W ADLVDGYLNYSLNLLDLLNS+SFSL+
Sbjct: 61  FHYLLQLLQGLLPTIHQSFAKLVVDLEYPVGRWRADLVDGYLNYSLNLLDLLNSISFSLT 120

Query: 121 QLGNSRLSLAYALSLVRSSPLMAVARLNPIVMKRNFMGLENRGIVVDRKKGYSGEEWAIE 180
           QLGNSR+SL+YALSL++SSP MAV+RL PI +KR   GLE RG V D KKG SGEE AIE
Sbjct: 121 QLGNSRVSLSYALSLIQSSPAMAVSRLKPIALKRYSEGLEIRGNVKDLKKGCSGEERAIE 180

Query: 181 RALATMMGIGYWVCGVVISGCEGDSTAYLEMRRLAAGVVVPAFKELDSVVSKM----GSV 240
           +ALATM GIGYW+CG+V+SGCEGD+TAYLEMRRLA+GV VPAFK LDSV+S +    GSV
Sbjct: 181 KALATMEGIGYWICGIVLSGCEGDATAYLEMRRLASGVTVPAFKALDSVISAVVAGKGSV 240

Query: 241 PEEVKEVNCAAKEVVGSGGGDGEAAEEMRRRLERLEKAVE 274
           PEEV+EVN A + ++   GG GEA EEMR+R+ RLEK VE
Sbjct: 241 PEEVEEVNVAVEMII---GGSGEAVEEMRKRMGRLEKTVE 277

[Close]

BLAST of Cp4.1LG17g07960 vs. ExPASy TrEMBL
Match: A0A0A0K882 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G420820 PE=4 SV=1)

HSP 1 Score: 340 bits (871), Expect = 1.73e-113
Identity = 190/282 (67.38%), Postives = 225/282 (79.79%), Query Frame = 0


Query: 1   MLLLLQSFNKHCSKFYNHHHSRHGNR-ASFSVSCLQAFDAEVSSCLNQLLLSSSDSTTLS 60
           M L+LQ+FNK CSK  N H +RHG++ ASFS+S L AF+ +VSSC N LLLS+S S  LS
Sbjct: 1   MPLVLQTFNKFCSKLDNRHPNRHGSKLASFSLSRLHAFEEDVSSCFNHLLLSTSASKPLS 60

Query: 61  FHWLLQLLQAL-PVLHRAFAKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLS 120
           FH+ LQLLQ L PV+H++FAKLVVDL+ PV +W ADLVDGY+NY+LNLLDLLNS+SFSL+
Sbjct: 61  FHYFLQLLQGLLPVIHKSFAKLVVDLEYPVGRWRADLVDGYINYTLNLLDLLNSISFSLT 120

Query: 121 QLGNSRLSLAYALSLVRSSPLMAVARLNPIVMKRNFMGLENRGIVVDRKKGYSGEEWAIE 180
           QLGNSR+ L+YALSL+ SSP MAV+RL PIV+KR   GLE +  V D KKG SGEE AI+
Sbjct: 121 QLGNSRVLLSYALSLIESSPAMAVSRLKPIVLKRYSEGLEIKANVKDLKKGCSGEERAIQ 180

Query: 181 RALATMMGIGYWVCGVVISGCEGDSTAYLEMRRLAAGVVVPAFKELDS----VVSKMGSV 240
           +ALATM GIGYWVCG+V+SGCEGDSTAYLEMR+LA+GV VPAFK LDS    VVS  GSV
Sbjct: 181 KALATMEGIGYWVCGIVLSGCEGDSTAYLEMRKLASGVTVPAFKALDSMILAVVSGKGSV 240

Query: 241 PEEVKEVNCAAKEVVGSGGGDGEAAEEMRRRLERLEKAVERL 276
           P+EV+EVN A   VV    G GEA EEMR+R+ RLEK VE L
Sbjct: 241 PDEVEEVNVAVAMVV---DGGGEAVEEMRKRMGRLEKTVEGL 279

[Close]

BLAST of Cp4.1LG17g07960 vs. TAIR 10
Match: AT1G01550.1 (Protein of unknown function (DUF793) )

HSP 1 Score: 56.6 bits (135), Expect = 4.1e-08
Identity = 38/119 (31.93%), Postives = 65/119 (54.62%), Query Frame = 0


Query: 21  SRHGNRASFSVSCLQAFDAEVSSCLNQLLLSSSDSTTLSFHWLLQLLQALPVLHRAFAKL 80
           S++   +S  +  L  F+  ++S +++ L+    S  L+  W+ Q +++L   H     L
Sbjct: 23  SKNSVLSSKLLPLLNNFETNLASSISK-LVPKEKSDILTVSWMKQAMESLCETHNGIKTL 82

Query: 81  VVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQLGNSRLSLAYAL-SLVRSSP 139
           + DL+ PV+ W    VD YL+ S+ LLDL N+ S  L++L    L L +AL +L  +SP
Sbjct: 83  ITDLELPVSDWEDKWVDVYLDISVKLLDLCNAFSSELTRLNQGHLLLQFALHNLEANSP 140

[Close]

BLAST of Cp4.1LG17g07960 vs. TAIR 10
Match: AT1G01550.2 (Protein of unknown function (DUF793) )

HSP 1 Score: 56.6 bits (135), Expect = 4.1e-08
Identity = 38/119 (31.93%), Postives = 65/119 (54.62%), Query Frame = 0


Query: 21  SRHGNRASFSVSCLQAFDAEVSSCLNQLLLSSSDSTTLSFHWLLQLLQALPVLHRAFAKL 80
           S++   +S  +  L  F+  ++S +++ L+    S  L+  W+ Q +++L   H     L
Sbjct: 23  SKNSVLSSKLLPLLNNFETNLASSISK-LVPKEKSDILTVSWMKQAMESLCETHNGIKTL 82

Query: 81  VVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQLGNSRLSLAYAL-SLVRSSP 139
           + DL+ PV+ W    VD YL+ S+ LLDL N+ S  L++L    L L +AL +L  +SP
Sbjct: 83  ITDLELPVSDWEDKWVDVYLDISVKLLDLCNAFSSELTRLNQGHLLLQFALHNLEANSP 140

[Close]

BLAST of Cp4.1LG17g07960 vs. TAIR 10
Match: AT2G46080.1 (CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT1G01550.2); Has 153 Blast hits to 139 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 7.8e-07
Identity = 35/116 (30.17%), Postives = 59/116 (50.86%), Query Frame = 0


Query: 21  SRHGNRASFSVSCLQAFDAEVSSCLNQLLLSSSDSTTLSFHWLLQLLQALPVLHRAFAKL 80
           S+  + + + +S L  F+  +   L +L+  + D   L+  W+   +++L   H+    L
Sbjct: 23  SKGSDLSPWLLSLLNGFELRLEERLKKLMPKNKDD-ILTLSWMKLAMESLCETHKNINTL 82

Query: 81  VVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQLGNSRLSLAYALSLVRS 137
           + DL  PV+ W    VD YLN S+ LLDL N+ S  L++L    L L   L  ++S
Sbjct: 83  ITDLQLPVSDWEEKWVDVYLNISVRLLDLCNAFSSELTRLNQGDLFLKCVLHNLQS 137

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g07960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LMM6	5.8e-07	31.93	Protein BPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BPS1 PE=2 SV=1	[more]
A2Z9A6	9.9e-07	40.70	UPF0496 protein 4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_033149 PE=3 SV=2	[more]
Q337C0	9.9e-07	40.70	UPF0496 protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0513300 PE=2 ...	[more]

BLAST of Cp4.1LG17g07960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023514538.1	1.40e-189	99.64	protein BPS1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
KAG6593278.1	2.59e-185	97.11	Protein BPS1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022960422.1	2.12e-184	96.75	protein BPS1, chloroplastic-like [Cucurbita moschata]	[more]
KAG7025628.1	2.03e-182	95.67	Protein BPS1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_023004871.1	6.39e-177	94.24	protein BPS1, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG17g07960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H7D5	1.03e-184	96.75	protein BPS1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111461156 P...	[more]
A0A6J1KTC2	3.10e-177	94.24	protein BPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111498050 PE=...	[more]
A0A5D3CEU0	1.58e-118	68.93	UPF0496 protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4...	[more]
A0A1S4E356	1.58e-118	68.93	UPF0496 protein 4-like OS=Cucumis melo OX=3656 GN=LOC107991802 PE=4 SV=1	[more]
A0A0A0K882	1.73e-113	67.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G420820 PE=4 SV=1	[more]

BLAST of Cp4.1LG17g07960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01550.1	4.1e-08	31.93	Protein of unknown function (DUF793)	[more]
AT1G01550.2	4.1e-08	31.93	Protein of unknown function (DUF793)	[more]
AT2G46080.1	7.8e-07	30.17	CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Ar...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 259..279
None	No IPR available	PANTHER	PTHR31509:SF13	PROTEIN BPS1, CHLOROPLASTIC-LIKE	coord: 1..276
None	No IPR available	PANTHER	PTHR31509	BPS1-LIKE PROTEIN	coord: 1..276

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g07960.1	Cp4.1LG17g07960.1	mRNA