Cp4.1LG17g07870 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g07870
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Ribosomal protein
Location	Cp4.1LG17: 5636834 .. 5642359 (-)
RNA-Seq Expression	Cp4.1LG17g07870
Synteny	Cp4.1LG17g07870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCAGTAAGCATCCATTACAATACATTTCATTTCACTCCCACCATTGCCAGAAACCTCTCTTATCCCTTCCATTTCTTTTATATTCATAGCCTGCCAGAGAAACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCGACTGAGCTTTCTCCCCCGCCATGGCAATGGCCACTTGTTGTCCCACTGTGCACTCCTCCCTTACGATGGCCCACACTTGTTCTGTTTACCCTCAAGACCTTCCTTCCCTTCTCTCCTTCCGACCCATTGCCGCCCCTTCCACCGCCAAGATTTTCCACCCCTTAATTGTCCGTAGCAGGGGAAGGAAGCCAATCAATTGGGTTGACCTTAATTTTAGGAGAGAATCTAGGGATCATTTGGTTGTGCCTGCTTTGGCTGCTTTGGCTGCGGAAATTGAGGTGCCTGAGGCTGTGGAAGAGAATGGAGAAGAGGCAAATACAGCTACTTTAATTGTGCCCAAGATTAAGAAGGGCAAGGCTGCATTGCCTCTTAAAAGGGACAGGGTAAGCTTGAGTTTAATCTCTCTTCTATTTGCCTGTTTTTAACCTTGTTGAATGGCTTTTTGGATGTGGTTTTAGCGTTTGATTAGTGGGTTTTGCTTCATTTTAGGTTTCTTTTTACTTTTGTCACTGNATTGTGAGATCCCAGGGAATGAAGCATTTCTTACAAGGGTGTGGAAACATTTCCCTAGTGGACGCGTTTTAAAACTGTGAGGCTGACGACGATATAATATCTACCAGCAGTGGACTTGGGCTGTTACAAATGGTATCAGAGCCAAACATCAGGCAGTGTGCCAACGTCCTTGCTGCCCCCAAGAGGGTGGATTGTGAGATCCCGCATCGGTCGGAGAAGGGAACGAAGCATTCCTTACAAGGGTGTGGAAACCTTTCCCATGTTCTAAAACCGTGAAGCTGACGACGATACGTAACGGGCCAAAGCAAATAATATCTACTAGCAGTAAGCTTAGACTATTACAAGTTCGTATCATATCTATTTTGATCACGCCTTCATTAGTTGATCAAGAACCATTTGAGGTCGAGTTCTATTTCTTTGTTTTTCTCCTTTGTAGCATCAGCCTTTGCAGCTAGTTATTATCCATATTTTCTTCTTTATCTTCTTTTCTTCAAACTTCTACTNTTTGTAATTTTGGAAACTGTTGCCTGTTAATGGAGCTGGAATTTGTCTTACGACTTTTTTGCTTGTTTTCCTGGCTACTTTCATTGGCTGTCTTCCACAAAATTAGACTGCTTCTCTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNGGTAGACTTAGGCCGTTACAAATGGTATCAAAGCCAAACACCGGGTGGTGTGCCAACGAGGATGCTGGGCCCCAAGGGGGTGGATTGTGAGATCCCAGGGAATGAAGCATTTCTTACAAGGGTGTGGAAACATTTCCCTAGTGGACGCGTTTTAAAACTGTGAGGCTGACGACGATATAATATCTACCAGCAGTGGACTTGGGCTGTTACAAATGGTATCAGAGCCAAACATCAGGCAGTGTGCCAACGTCCTTGCTGCCCCCAAGAGGGTGGATTGTGAGATCCCGCATCGGTCGGAGAAGGGAACGAAGCATTCCTTACAAGGGTGTGGAAACCTTTCCCATGTTCTAAAACCGTGAAGCTGACGACGATACGTAACGGGCCAAAGCAAATAATATCTACTAGCAGTAAGCTTAGACTATTACAAGTTCGTATCATATCTATTTTGATCACGCCTTCATTAGTTGATCAAGAACCATTTGAGGTCGAGTTCTATTTCTTTGTTTTTCTCCTTTGTAGCATCAGCCTTTGCAGCTAGTTATTATCCATATTTTCTTCTTTATCTTCTTTTCTTCAAACTTCTACTTTGAGCTAAACCATAGATTTAAAGAGAGGTCCATAAACAATATATGGATTACTCTTAGTTCATACTGTTAGCCATGTTCTTAAAATATGCATTTTTCACCTTTGTTCATCACTGCTGCATCAGCTCTTACATGAAATTGTGTTCTTTAAACCTGCAGACCAGATCAAAGAGGTTCCTTGAGATTCAAAAACTGAGGGAAAGCAAAAAAGAGTATGACCTGAAAACAGCAATATCTTTGTTGAAACAAATGTGTAGCACGAAATTTGTGGAAACCGCCGAAGCCCATTTTCGATTAAACATCGATCCGAAATATAACGATCAACAGCTGAGAGCAACAGTAAGTTTAAGTCCAACCCACTACTTGATTCTACTATATCTATGTCCTTCATCATCAATGCTCACTTTTCTTACAGGTTAATCTGCCCAAGGGAACTGGGCAGACAGTCAAGGTAGCTGTTCTTACTCAAGGTAAGTACTAAATTTAACTCGAGCGATATCTTTGTTGGTTAGGATATAACATTCGATGTTAGAAGTAACGTGAGTTTTTTATGAGCTTTGGTTCGATTTCTTTCACTTTTGAAGAACCATTATTTCGTTATCGTGAGACCACTGGGGAAAGGATATTTACATTTGATACAACTAGTTATATGAACCTTAATGGATATTATTGTCTGCATAGTGTTGTTAGGATCGCACAACGACACGCACTCGATCTAGATGAACACAAAAAATAGGAGAGGAAATATAAGGAGTGATACTGGCTAGAGGTTTATATTAATGACTTCAAGTATGTAACGCAAGAGAGACTACAGTACCTTTCTAAAGAACTGACTAAGGGTATATATATATATATATATATATAGCTTTACCCGATATAGCCATCTTAGCTATCTATAGCTAAAGTACTGACTAAGGATATATATATATATATATATATATATATATATATGGTTCAGTTCAATATATATAGCTTTATCCGGTATAACCATCTATAGCTAATACTATTGCTTAAAGGCTACAAATTCAAAAAAAAGTGAAAGATAAGTGAAGTGAAATATCAAGAAGCCCCGACCCGTAACAAATGATAAACTTAGAAACTTAACGAAGAACTAATACATCAAATTGAATCAAGAGAATTGACGTCGAATGTCCATTGAAATTGGAATGGACTTCCAAAAACTCCATCAAATATTGGTATTAAATGCGACATCCTGCATCGTTCATATGCAACTCTTGATCATTAGTTTCGGTTTTCCGTGAATCTTAAAAAATCGAGTTTTCTGACCCAACTAGGAGTTATCTCATTGTTTTTCGGGGTGTTTCTTTTCTTCTTTATGTTTCGTTTTCTTTTTATCACTTGGAATTATCTGATTGCTTTCCGAATTATATAGGCGAAAAATTCGACGAAGCGAAAAATGCAGGAGCAGATTTGGTAGGTGGTGAGGATTTGATAGAACAGATTAAAGGAGGGTTTATGGAATTTGATAAGTTAATTGCCTCACCAGATATGATGCCAAAGGTATGGTTCTTACATCTTGTTCCTATCATACACTAAGCTGGCTTTCCAACACTATACATAATTCTAACAACATTCAGTAGGATTGAAGTATCTGTTCCAGTTTAATTTGAAATTAAGTGCTCATCGGTTGGAGAGGGGAACGAAACATTTCTTATACGGGTGTGAAAATCTCTCCTTAGTAGACGCGTTTAAAAACCTTGAAGGGAAACCCGAAAAGGAAAGCCCAAAGAGGACAATATATGCTAGTGCTTGACTTAGGCGGTTAGAAATGGTATTAGAGCTAGATACCGGGCGGTGTGCCAGTGAGGATACTGGGTCCCCAAGGAGGGTGGATTGTGAGATCCCACATCAGTTGGGAGGGGTATGAACCCTTCCTTATAAGGGTGTGGAAACCTCTCTCTAGCGGACACGTTTTAAAAACCTTGAGGGGAGACCCGAAAAGGAAAGCCCAAAAAGGATAGTCTGCTAATAGTGGGTTTAGTGTTACAAATGGTATCAGAACCAGATATCGGGCGGTGTGCCAACGAGGACGCTAAGCTCCCAAAGGGGGTGGATTGTGAGATCCCACATTGGTTAGAGAGGGGAACGAAGCATTCCTTATATAAGAGTGTAGAAACCTCTCCCTAGCAAACGTCGTTTTAAAAACTTTGAGGGGAAGCCCGAAAAGGAAAGTCCAAAGAAGACAATATCTGCTAGCGGTGAACGTACATTTCTACCTTTCTCATATGCAACTAATAACTATTTAGGCTCCCAAAGGGGGTGGATTGTGAGATCCCCCATCGGTTAGAGGGGAACGAAGTATTCCTTATAAGGGTGTAGAAACCTCTCCCTAGCCGACGTCGTTTTAAAAAACTTCGAGGGGAAGCCCGAAAAGGAAAGTTCAAAGAAGACAATATCTGCTAGCGGTGAACGTACATTTCTACCTTTCTCATATGCAACTAATAACTATTTCTTCAATACCTGTATGGATAATATTCTTGGCGACCTCTTGTACTATCTATGACTTGACTTCTAAGCTAAGATACGTTGCGTTGCGTGCATTCATGTCAAAGATTTGTCAAAGATTAAAAGAAAATGAATAGAATTGATTCTCTCTTGGCCTCGTGCTGATAGCCAACTGATACGTTTACGAACGATTTTGGTGTTCACTTCAGAATTGGTGCGGATTTTGAGATATTTTAGTCAGCTCGAGCAACTTTAAATGAACCATTGATTTGATATAGTCCTATCCTTTCTGTTTGTTTTAGGTTGCTAGTCTAGGGAAGCTTCTAGGACCTCGAGGACTGATGCCAAATCCGAAAGCTGGCACGGTCACAACCAATATACCTCAGGTACGTGTTCGATCTATCTACATTAGTATACCTTACAAATCGACAATGAAATCGTACTGTGTGCGTTCATCCACGAGATATTGAATGATGTAGCCTTGTCCTGTTCCAGGCTATAGCGGAATTCAAGCAGGGAAAAGTCGAATACAGAGCGGATAAAACCGGGATTGTTCACTTACCTTTTGGAAAGGCAGACTTTTCCGAAGACGACCTCCTCGTGAACTTGCTTGCTGCAATAGTATGTTCTTTCCTCATCTCGAGTTCTCAAGAACTTCATTTATTTCTAAAACTCGATTTTCTTCGCCTTATTGATACGGTTTGCTTTAATCTATAATAGAAATCAGTAGAAGTAAACAAGCCAACAGGTGCTAAAGGAGTATACTGGAAGAGCGCACACATATGCTCGTCGATGGGGCCTTCGATTCGGTTGAACACAAGGGAAATGCTCGATTACAAGATTCCGTCATCAAATGCTTGAAGAATTTTACTCTTACACCTGTAAATGTGTTCATCAATTTGTTTAATCCCGACCCTCTCGGATGCGACTTTCGGTCGTCTTCAGTGGCTGAACATTGTTGAGATGGTAAGAAAGTTGGTATGGCGTTCTGAAGAAAGAAGAGAGGTTGTATGATTCATGTTGGGTTGAAGAGTTAACTTGGAAACTGCATACTCATTTTGTTTATGAACTGATACAAAGTAGCCCACTTTTGTTGTGATTATCAGTATCAATCTTTTCATGTCATCTGATGATTATTGTTTATTTCAAG

mRNA sequence

TGCAGTAAGCATCCATTACAATACATTTCATTTCACTCCCACCATTGCCAGAAACCTCTCTTATCCCTTCCATTTCTTTTATATTCATAGCCTGCCAGAGAAACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCGACTGAGCTTTCTCCCCCGCCATGGCAATGGCCACTTGTTGTCCCACTGTGCACTCCTCCCTTACGATGGCCCACACTTGTTCTGTTTACCCTCAAGACCTTCCTTCCCTTCTCTCCTTCCGACCCATTGCCGCCCCTTCCACCGCCAAGATTTTCCACCCCTTAATTGTCCGTAGCAGGGGAAGGAAGCCAATCAATTGGGTTGACCTTAATTTTAGGAGAGAATCTAGGGATCATTTGGTTGTGCCTGCTTTGGCTGCTTTGGCTGCGGAAATTGAGGTGCCTGAGGCTGTGGAAGAGAATGGAGAAGAGGCAAATACAGCTACTTTAATTGTGCCCAAGATTAAGAAGGGCAAGGCTGCATTGCCTCTTAAAAGGGACAGGACCAGATCAAAGAGGTTCCTTGAGATTCAAAAACTGAGGGAAAGCAAAAAAGAGTATGACCTGAAAACAGCAATATCTTTGTTGAAACAAATGTGTAGCACGAAATTTGTGGAAACCGCCGAAGCCCATTTTCGATTAAACATCGATCCGAAATATAACGATCAACAGCTGAGAGCAACAGTTAATCTGCCCAAGGGAACTGGGCAGACAGTCAAGGTAGCTGTTCTTACTCAAGGCGAAAAATTCGACGAAGCGAAAAATGCAGGAGCAGATTTGGTAGGTGGTGAGGATTTGATAGAACAGATTAAAGGAGGGTTTATGGAATTTGATAAGTTAATTGCCTCACCAGATATGATGCCAAAGGTTGCTAGTCTAGGGAAGCTTCTAGGACCTCGAGGACTGATGCCAAATCCGAAAGCTGGCACGGTCACAACCAATATACCTCAGGCTATAGCGGAATTCAAGCAGGGAAAAGTCGAATACAGAGCGGATAAAACCGGGATTGTTCACTTACCTTTTGGAAAGGCAGACTTTTCCGAAGACGACCTCCTCGTGAACTTGCTTGCTGCAATAAAATCAGTAGAAGTAAACAAGCCAACAGGTGCTAAAGGAGTATACTGGAAGAGCGCACACATATGCTCGTCGATGGGGCCTTCGATTCGGTTGAACACAAGGGAAATGCTCGATTACAAGATTCCGTCATCAAATGCTTGAAGAATTTTACTCTTACACCTGTAAATGTGTTCATCAATTTGTTTAATCCCGACCCTCTCGGATGCGACTTTCGGTCGTCTTCAGTGGCTGAACATTGTTGAGATGGTAAGAAAGTTGGTATGGCGTTCTGAAGAAAGAAGAGAGGTTGTATGATTCATGTTGGGTTGAAGAGTTAACTTGGAAACTGCATACTCATTTTGTTTATGAACTGATACAAAGTAGCCCACTTTTGTTGTGATTATCAGTATCAATCTTTTCATGTCATCTGATGATTATTGTTTATTTCAAG

Coding sequence (CDS)

ATGGCAATGGCCACTTGTTGTCCCACTGTGCACTCCTCCCTTACGATGGCCCACACTTGTTCTGTTTACCCTCAAGACCTTCCTTCCCTTCTCTCCTTCCGACCCATTGCCGCCCCTTCCACCGCCAAGATTTTCCACCCCTTAATTGTCCGTAGCAGGGGAAGGAAGCCAATCAATTGGGTTGACCTTAATTTTAGGAGAGAATCTAGGGATCATTTGGTTGTGCCTGCTTTGGCTGCTTTGGCTGCGGAAATTGAGGTGCCTGAGGCTGTGGAAGAGAATGGAGAAGAGGCAAATACAGCTACTTTAATTGTGCCCAAGATTAAGAAGGGCAAGGCTGCATTGCCTCTTAAAAGGGACAGGACCAGATCAAAGAGGTTCCTTGAGATTCAAAAACTGAGGGAAAGCAAAAAAGAGTATGACCTGAAAACAGCAATATCTTTGTTGAAACAAATGTGTAGCACGAAATTTGTGGAAACCGCCGAAGCCCATTTTCGATTAAACATCGATCCGAAATATAACGATCAACAGCTGAGAGCAACAGTTAATCTGCCCAAGGGAACTGGGCAGACAGTCAAGGTAGCTGTTCTTACTCAAGGCGAAAAATTCGACGAAGCGAAAAATGCAGGAGCAGATTTGGTAGGTGGTGAGGATTTGATAGAACAGATTAAAGGAGGGTTTATGGAATTTGATAAGTTAATTGCCTCACCAGATATGATGCCAAAGGTTGCTAGTCTAGGGAAGCTTCTAGGACCTCGAGGACTGATGCCAAATCCGAAAGCTGGCACGGTCACAACCAATATACCTCAGGCTATAGCGGAATTCAAGCAGGGAAAAGTCGAATACAGAGCGGATAAAACCGGGATTGTTCACTTACCTTTTGGAAAGGCAGACTTTTCCGAAGACGACCTCCTCGTGAACTTGCTTGCTGCAATAAAATCAGTAGAAGTAAACAAGCCAACAGGTGCTAAAGGAGTATACTGGAAGAGCGCACACATATGCTCGTCGATGGGGCCTTCGATTCGGTTGAACACAAGGGAAATGCTCGATTACAAGATTCCGTCATCAAATGCTTGA

Protein sequence

MAMATCCPTVHSSLTMAHTCSVYPQDLPSLLSFRPIAAPSTAKIFHPLIVRSRGRKPINWVDLNFRRESRDHLVVPALAALAAEIEVPEAVEENGEEANTATLIVPKIKKGKAALPLKRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA

Homology

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BLAST of Cp4.1LG17g07870 vs. ExPASy Swiss-Prot
Match: Q9LE95 (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 1.2e-125
Identity = 242/355 (68.17%), Postives = 276/355 (77.75%), Query Frame = 0


Query: 3   MATCCPTVHSSLTMAHTCSVYPQDLPSLLSFRPIAAPSTAKIFHPLIVRSRGRKPINWVD 62
           MAT  P    SL  A +   Y QD      F+P+   S+      L +  R R  + WVD
Sbjct: 1   MATAAPP-SLSLCYASSSFQYQQDPSFQTHFKPLLLNSS---LCRLTLNQRERSCLKWVD 60

Query: 63  LNFRRESRDHLVVPALAALAAEIEVPEAVEENGEEANTATLIVP-KIKKGKAALPLKRDR 122
              +++S   +    LAA+AAE EV +  EE GE    ATL  P K KKGKAALPLK DR
Sbjct: 61  FTSQKQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDR 120

Query: 123 TRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQLRAT 182
           TRSKRFLEIQKLRE K+EYDLKTA+SL+KQM STKFVETAEAHFRLNIDPKYNDQQLRAT
Sbjct: 121 TRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRAT 180

Query: 183 VNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMP 242
           V+LPKGTG+TVK+AVL QG+K DEAK AGAD+VGGE+LIEQIKGGFM+FDKLIA+ DMM 
Sbjct: 181 VSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMA 240

Query: 243 KVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSE 302
           KVASLG++LGPRGLMP PKAGTVT N+ QA+ EFK+GKVE+R DKTGIVH+PFGK +F E
Sbjct: 241 KVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEE 300

Query: 303 DDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSS 357
           +DLL+NL A IKSVE NKPTGAKGVYWKSAHI SSMGPSIRLN REMLDYK PS+
Sbjct: 301 EDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSN 351

[Close]

BLAST of Cp4.1LG17g07870 vs. ExPASy Swiss-Prot
Match: Q9LY66 (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 2.8e-122
Identity = 244/360 (67.78%), Postives = 279/360 (77.50%), Query Frame = 0


Query: 3   MATCCPTVHSSLTMAH-TCSVYPQDL---PSLLSFRPIAAPSTAKIFHPLIVRSRGR-KP 62
           MA C    HSSL +A+   S   QDL   PSL SF   A+     +  PL++    R + 
Sbjct: 1   MAAC--ATHSSLMLAYAAASTRSQDLTPTPSLFSF---ASSRPNHLSFPLLLLGGSRDRR 60

Query: 63  INWVDLNFRRESRDHLVVPALAALAAEIEVPEAVEENGEEANTATLIVPKIKKGKAALPL 122
              +D    R S    +V A+AA     E     EE+ E+  TA L  PK KKGKAAL L
Sbjct: 61  CAAID----RASNHKFIVSAVAA-----EADLDTEEDLEQTATAVLDPPKPKKGKAALVL 120

Query: 123 KRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQ 182
           KRDRTRSKRFLEIQKLRE+KKEYD+ TAISLLKQ  +T+FVE+ EAHFRLNIDPKYNDQQ
Sbjct: 121 KRDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQ 180

Query: 183 LRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASP 242
           LRATV+LPKGTGQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFMEFDKLIASP
Sbjct: 181 LRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASP 240

Query: 243 DMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKA 302
           DMM KVA LGK+LGPRGLMPNPKAGTVT NIPQAI EFK+GKVE+RADKTGIVH+PFGK 
Sbjct: 241 DMMVKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKV 300

Query: 303 DFSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSN 358
           +F+E+DLL+N LAA+KSVE NKP GAKGVYWKSAHICSSMGPSI+LN REM+D+K P++N
Sbjct: 301 NFTEEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPTAN 346

[Close]

BLAST of Cp4.1LG17g07870 vs. ExPASy Swiss-Prot
Match: P49208 (50S ribosomal protein L1, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=RPL1 PE=2 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 6.7e-76
Identity = 145/168 (86.31%), Postives = 155/168 (92.26%), Query Frame = 0


Query: 108 IKKGKAALPLKRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRL 167
           +++GK    LK DR RSKRFLEIQKLRE KKEYDLKTAISL+K+   TKFVET EAHFRL
Sbjct: 41  LRQGKLHWRLKSDRVRSKRFLEIQKLRELKKEYDLKTAISLVKETAKTKFVETVEAHFRL 100

Query: 168 NIDPKYNDQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGF 227
           NIDPKYNDQQLRATV+LPKGTG+ +KVAVLTQGE+FDEAKNAGADLVGGEDLIEQIKGGF
Sbjct: 101 NIDPKYNDQQLRATVSLPKGTGKPIKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGF 160

Query: 228 MEFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEF 276
           MEFDKLIASPDMMPKVASLGK+LGPRGLMPNPKAGTVT NIPQAIAEF
Sbjct: 161 MEFDKLIASPDMMPKVASLGKILGPRGLMPNPKAGTVTANIPQAIAEF 208

[Close]

BLAST of Cp4.1LG17g07870 vs. ExPASy Swiss-Prot
Match: B0JNQ5 (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rplA PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 4.4e-75
Identity = 140/230 (60.87%), Postives = 183/230 (79.57%), Query Frame = 0


Query: 124 SKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQLRATVN 183
           S+R  + Q   E+ K Y+   A++LLK++ + KF ETAEAH RL IDPKY DQQLR TV+
Sbjct: 6   SRRLRDAQAKVEN-KAYEPLEALTLLKELATAKFDETAEAHIRLGIDPKYTDQQLRTTVS 65

Query: 184 LPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKV 243
           LPKGTG+TV+VAV+T+GEK  EA NAGAD+VG E+LIE+I  G M+F+ LIA+PDMMPKV
Sbjct: 66  LPKGTGRTVRVAVITRGEKVQEANNAGADIVGSEELIEEIAKGMMDFEVLIATPDMMPKV 125

Query: 244 ASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDD 303
           A LG+ LGPRGLMP+PK GTVTT++  AIAEFK GK+E+RAD+TGIVH+ FGKA FS +D
Sbjct: 126 AKLGRQLGPRGLMPSPKGGTVTTDLTGAIAEFKAGKLEFRADRTGIVHVQFGKASFSAED 185

Query: 304 LLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKI 354
           LLVNL A  ++V+ N+P+GAKG YW++ ++ SSMGPSI+++   + D K+
Sbjct: 186 LLVNLKALQETVDRNRPSGAKGRYWRTVYVSSSMGPSIQVDISALRDLKL 234

[Close]

BLAST of Cp4.1LG17g07870 vs. ExPASy Swiss-Prot
Match: Q3MA18 (50S ribosomal protein L1 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rplA PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 3.7e-74
Identity = 138/230 (60.00%), Postives = 180/230 (78.26%), Query Frame = 0


Query: 124 SKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQLRATVN 183
           S+R  E+Q   E  +EY    A+SLLK+  + KF E AEAH RL IDPKY DQQLR TV 
Sbjct: 6   SRRLRELQAKVED-REYGPLDALSLLKETATAKFAEAAEAHIRLGIDPKYTDQQLRTTVA 65

Query: 184 LPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMPKV 243
           LPKGTGQ V+VAV+ +GEK  EA NAGAD+ G E+LI++I+ G M+FDKLIA+PD+MP+V
Sbjct: 66  LPKGTGQIVRVAVIARGEKVTEASNAGADVFGSEELIDEIQKGRMDFDKLIATPDVMPQV 125

Query: 244 ASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDD 303
           A LGK+LGPRGLMP+PK GTVT +I  AIAEFK GK+E+RAD+TGIVH+ FGKA FS +D
Sbjct: 126 AKLGKMLGPRGLMPSPKGGTVTFDIASAIAEFKAGKLEFRADRTGIVHVMFGKASFSPED 185

Query: 304 LLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKI 354
           LLVNL A  ++++ N+P+GAKG YW++ ++ ++MGPSIR++   + DYK+
Sbjct: 186 LLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKL 234

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BLAST of Cp4.1LG17g07870 vs. NCBI nr
Match: XP_023515181.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 700 bits (1806), Expect = 6.53e-254
Identity = 358/358 (100.00%), Postives = 358/358 (100.00%), Query Frame = 0


Query: 1   MAMATCCPTVHSSLTMAHTCSVYPQDLPSLLSFRPIAAPSTAKIFHPLIVRSRGRKPINW 60
           MAMATCCPTVHSSLTMAHTCSVYPQDLPSLLSFRPIAAPSTAKIFHPLIVRSRGRKPINW
Sbjct: 1   MAMATCCPTVHSSLTMAHTCSVYPQDLPSLLSFRPIAAPSTAKIFHPLIVRSRGRKPINW 60

Query: 61  VDLNFRRESRDHLVVPALAALAAEIEVPEAVEENGEEANTATLIVPKIKKGKAALPLKRD 120
           VDLNFRRESRDHLVVPALAALAAEIEVPEAVEENGEEANTATLIVPKIKKGKAALPLKRD
Sbjct: 61  VDLNFRRESRDHLVVPALAALAAEIEVPEAVEENGEEANTATLIVPKIKKGKAALPLKRD 120

Query: 121 RTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQLRA 180
           RTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM 240
           TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA 358
           EDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA
Sbjct: 301 EDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA 358

[Close]

BLAST of Cp4.1LG17g07870 vs. NCBI nr
Match: XP_022960486.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita moschata] >KAG7025633.1 50S ribosomal protein L1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 684 bits (1764), Expect = 1.47e-247
Identity = 352/358 (98.32%), Postives = 353/358 (98.60%), Query Frame = 0


Query: 1   MAMATCCPTVHSSLTMAHTCSVYPQDLPSLLSFRPIAAPSTAKIFHPLIVRSRGRKPINW 60
           MAMATCCPTVHSSLTMAHTCSV+PQDLPSLLSFRPIAAPSTAKIFHPLIVRSRGRKPINW
Sbjct: 1   MAMATCCPTVHSSLTMAHTCSVHPQDLPSLLSFRPIAAPSTAKIFHPLIVRSRGRKPINW 60

Query: 61  VDLNFRRESRDHLVVPALAALAAEIEVPEAVEENGEEANTATLIVPKIKKGKAALPLKRD 120
           VD NFRRESRDHLVV   AALAAEIEVPEAVEENGEE NTATLIVPKIKKGKAALPLKRD
Sbjct: 61  VDFNFRRESRDHLVV---AALAAEIEVPEAVEENGEEGNTATLIVPKIKKGKAALPLKRD 120

Query: 121 RTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQLRA 180
           RTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM 240
           TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA 358
           EDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA
Sbjct: 301 EDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA 355

[Close]

BLAST of Cp4.1LG17g07870 vs. NCBI nr
Match: KAG6593282.1 (50S ribosomal protein L1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 681 bits (1758), Expect = 1.21e-246
Identity = 351/358 (98.04%), Postives = 352/358 (98.32%), Query Frame = 0


Query: 1   MAMATCCPTVHSSLTMAHTCSVYPQDLPSLLSFRPIAAPSTAKIFHPLIVRSRGRKPINW 60
           MAMATCCPTVHSSL MAHTCSV+PQDLPSLLSFRPIAAPSTAKIFHPLIVRSRGRKPINW
Sbjct: 1   MAMATCCPTVHSSLMMAHTCSVHPQDLPSLLSFRPIAAPSTAKIFHPLIVRSRGRKPINW 60

Query: 61  VDLNFRRESRDHLVVPALAALAAEIEVPEAVEENGEEANTATLIVPKIKKGKAALPLKRD 120
           VD NFRRESRDHLVV   AALAAEIEVPEAVEENGEE NTATLIVPKIKKGKAALPLKRD
Sbjct: 61  VDFNFRRESRDHLVV---AALAAEIEVPEAVEENGEEGNTATLIVPKIKKGKAALPLKRD 120

Query: 121 RTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQLRA 180
           RTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM 240
           TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA 358
           EDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA
Sbjct: 301 EDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA 355

[Close]

BLAST of Cp4.1LG17g07870 vs. NCBI nr
Match: XP_023004585.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 659 bits (1699), Expect = 1.33e-237
Identity = 344/361 (95.29%), Postives = 347/361 (96.12%), Query Frame = 0


Query: 1   MAMATCCPTVHSSLTMAHTCSVYPQDLPSLLSFRPIAAPSTAKIF---HPLIVRSRGRKP 60
           MAMATCCP VHSSLTMAHT SV+P DLPSLLSFRPIAA STAKI    HP I+RSRG KP
Sbjct: 1   MAMATCCPAVHSSLTMAHTSSVHPLDLPSLLSFRPIAASSTAKILSLSHPFILRSRGGKP 60

Query: 61  INWVDLNFRRESRDHLVVPALAALAAEIEVPEAVEENGEEANTATLIVPKIKKGKAALPL 120
           INWVD NFRRESRDHLVV   AALAAEIEVPEAVEENGEEA+TATLIVPKIKKGKAALPL
Sbjct: 61  INWVDFNFRRESRDHLVV---AALAAEIEVPEAVEENGEEASTATLIVPKIKKGKAALPL 120

Query: 121 KRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQ 180
           KRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQ
Sbjct: 121 KRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQ 180

Query: 181 LRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASP 240
           LRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASP
Sbjct: 181 LRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASP 240

Query: 241 DMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKA 300
           DMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKA
Sbjct: 241 DMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKA 300

Query: 301 DFSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSN 358
           DFSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSN
Sbjct: 301 DFSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSN 358

[Close]

BLAST of Cp4.1LG17g07870 vs. NCBI nr
Match: XP_022152504.1 (50S ribosomal protein L1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 624 bits (1609), Expect = 7.38e-224
Identity = 329/363 (90.63%), Postives = 338/363 (93.11%), Query Frame = 0


Query: 1   MAMATCCPTVHSSLTMAHTCSVYPQDLPSLLSFRPIAAPSTAKIF---HPLIVRSRGRKP 60
           MAMATC PT  SSLTMAHT SV+PQD+PSLLSFRP+AA STA IF   HPL V+ RG + 
Sbjct: 1   MAMATCSPTARSSLTMAHTSSVHPQDIPSLLSFRPMAASSTATIFSLCHPLTVQRRGGRS 60

Query: 61  INWVDLNFRRESRDHLVVPALAALAAEIEVPEAVEENGEE--ANTATLIVPKIKKGKAAL 120
           INWVDLNFRRESRDHLVV   AALAAEIEV E VEENGEE  A  AT +VPK+K+GKAAL
Sbjct: 61  INWVDLNFRRESRDHLVV---AALAAEIEVAEVVEENGEEGVAGLATSVVPKLKRGKAAL 120

Query: 121 PLKRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYND 180
           PLKRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQM STKFVETAEAHFRLNIDPKYND
Sbjct: 121 PLKRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYND 180

Query: 181 QQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIA 240
           QQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIA
Sbjct: 181 QQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIA 240

Query: 241 SPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFG 300
           SPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFG
Sbjct: 241 SPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFG 300

Query: 301 KADFSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPS 358
           KADFSEDDLLVNLLAA+KSVEVNKPTGAKGVYWKSAHICSSMGPSIRLN REMLDYKIPS
Sbjct: 301 KADFSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPS 360

[Close]

BLAST of Cp4.1LG17g07870 vs. ExPASy TrEMBL
Match: A0A6J1H7Q8 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111461210 PE=3 SV=1)

HSP 1 Score: 684 bits (1764), Expect = 7.13e-248
Identity = 352/358 (98.32%), Postives = 353/358 (98.60%), Query Frame = 0


Query: 1   MAMATCCPTVHSSLTMAHTCSVYPQDLPSLLSFRPIAAPSTAKIFHPLIVRSRGRKPINW 60
           MAMATCCPTVHSSLTMAHTCSV+PQDLPSLLSFRPIAAPSTAKIFHPLIVRSRGRKPINW
Sbjct: 1   MAMATCCPTVHSSLTMAHTCSVHPQDLPSLLSFRPIAAPSTAKIFHPLIVRSRGRKPINW 60

Query: 61  VDLNFRRESRDHLVVPALAALAAEIEVPEAVEENGEEANTATLIVPKIKKGKAALPLKRD 120
           VD NFRRESRDHLVV   AALAAEIEVPEAVEENGEE NTATLIVPKIKKGKAALPLKRD
Sbjct: 61  VDFNFRRESRDHLVV---AALAAEIEVPEAVEENGEEGNTATLIVPKIKKGKAALPLKRD 120

Query: 121 RTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQLRA 180
           RTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM 240
           TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA 358
           EDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA
Sbjct: 301 EDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSNA 355

[Close]

BLAST of Cp4.1LG17g07870 vs. ExPASy TrEMBL
Match: A0A6J1KV03 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111497839 PE=3 SV=1)

HSP 1 Score: 659 bits (1699), Expect = 6.43e-238
Identity = 344/361 (95.29%), Postives = 347/361 (96.12%), Query Frame = 0


Query: 1   MAMATCCPTVHSSLTMAHTCSVYPQDLPSLLSFRPIAAPSTAKIF---HPLIVRSRGRKP 60
           MAMATCCP VHSSLTMAHT SV+P DLPSLLSFRPIAA STAKI    HP I+RSRG KP
Sbjct: 1   MAMATCCPAVHSSLTMAHTSSVHPLDLPSLLSFRPIAASSTAKILSLSHPFILRSRGGKP 60

Query: 61  INWVDLNFRRESRDHLVVPALAALAAEIEVPEAVEENGEEANTATLIVPKIKKGKAALPL 120
           INWVD NFRRESRDHLVV   AALAAEIEVPEAVEENGEEA+TATLIVPKIKKGKAALPL
Sbjct: 61  INWVDFNFRRESRDHLVV---AALAAEIEVPEAVEENGEEASTATLIVPKIKKGKAALPL 120

Query: 121 KRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQ 180
           KRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQ
Sbjct: 121 KRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQ 180

Query: 181 LRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASP 240
           LRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASP
Sbjct: 181 LRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASP 240

Query: 241 DMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKA 300
           DMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKA
Sbjct: 241 DMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKA 300

Query: 301 DFSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSN 358
           DFSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSN
Sbjct: 301 DFSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSN 358

[Close]

BLAST of Cp4.1LG17g07870 vs. ExPASy TrEMBL
Match: A0A6J1DG73 (Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111020212 PE=3 SV=1)

HSP 1 Score: 624 bits (1609), Expect = 3.57e-224
Identity = 329/363 (90.63%), Postives = 338/363 (93.11%), Query Frame = 0


Query: 1   MAMATCCPTVHSSLTMAHTCSVYPQDLPSLLSFRPIAAPSTAKIF---HPLIVRSRGRKP 60
           MAMATC PT  SSLTMAHT SV+PQD+PSLLSFRP+AA STA IF   HPL V+ RG + 
Sbjct: 1   MAMATCSPTARSSLTMAHTSSVHPQDIPSLLSFRPMAASSTATIFSLCHPLTVQRRGGRS 60

Query: 61  INWVDLNFRRESRDHLVVPALAALAAEIEVPEAVEENGEE--ANTATLIVPKIKKGKAAL 120
           INWVDLNFRRESRDHLVV   AALAAEIEV E VEENGEE  A  AT +VPK+K+GKAAL
Sbjct: 61  INWVDLNFRRESRDHLVV---AALAAEIEVAEVVEENGEEGVAGLATSVVPKLKRGKAAL 120

Query: 121 PLKRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYND 180
           PLKRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQM STKFVETAEAHFRLNIDPKYND
Sbjct: 121 PLKRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMSSTKFVETAEAHFRLNIDPKYND 180

Query: 181 QQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIA 240
           QQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIA
Sbjct: 181 QQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIA 240

Query: 241 SPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFG 300
           SPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFG
Sbjct: 241 SPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFG 300

Query: 301 KADFSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPS 358
           KADFSEDDLLVNLLAA+KSVEVNKPTGAKGVYWKSAHICSSMGPSIRLN REMLDYKIPS
Sbjct: 301 KADFSEDDLLVNLLAAVKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPS 360

[Close]

BLAST of Cp4.1LG17g07870 vs. ExPASy TrEMBL
Match: A0A0A0K886 (Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_7G420870 PE=3 SV=1)

HSP 1 Score: 612 bits (1578), Expect = 1.89e-219
Identity = 325/363 (89.53%), Postives = 335/363 (92.29%), Query Frame = 0


Query: 1   MAMATCCPTVHSSLTMAHTCSVYPQDLPSLLSFRPIAAPSTAKIF---HPLIVRSRGRKP 60
           MAMATC PT+HSSLTMAHT SV+PQD  SLLSFRPIAA STA IF   HPLI++ RG + 
Sbjct: 1   MAMATCNPTLHSSLTMAHTSSVHPQDPSSLLSFRPIAASSTANIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRESRDHLVVPALAALAAEIEVPEAVEENGEEAN--TATLIVPKIKKGKAAL 120
           INWVDL F RE RDHLVV   AALAAEIEV E VEENGEE N  TAT ++PKIKKGKAAL
Sbjct: 61  INWVDLKFGRECRDHLVV---AALAAEIEVDEDVEENGEEGNGGTATSVLPKIKKGKAAL 120

Query: 121 PLKRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYND 180
           PLKRDRTRSKRFLEIQKLRE+K EYDLKTAISLLKQ  STKFVETAEAHFRLNIDPKYND
Sbjct: 121 PLKRDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDPKYND 180

Query: 181 QQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIA 240
           QQLRATVNLPKGTGQTVKVAVLTQGEK DEAKNAGADLVGG+DLIEQIKGGFMEFDKLIA
Sbjct: 181 QQLRATVNLPKGTGQTVKVAVLTQGEKLDEAKNAGADLVGGKDLIEQIKGGFMEFDKLIA 240

Query: 241 SPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFG 300
           SPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFG
Sbjct: 241 SPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFG 300

Query: 301 KADFSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPS 358
           KADFSEDDLLVNLL+AIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPS
Sbjct: 301 KADFSEDDLLVNLLSAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPS 360

[Close]

BLAST of Cp4.1LG17g07870 vs. ExPASy TrEMBL
Match: A0A5D3CGN7 (Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00300 PE=3 SV=1)

HSP 1 Score: 607 bits (1566), Expect = 1.27e-217
Identity = 323/363 (88.98%), Postives = 330/363 (90.91%), Query Frame = 0


Query: 1   MAMATCCPTVHSSLTMAHTCSVYPQDLPSLLSFRPIAAPSTAKIF---HPLIVRSRGRKP 60
           MAMATC PTVHSS TMAHT SV+PQD  SLLSFRPIAA STA IF   HPLI++ RG + 
Sbjct: 1   MAMATCNPTVHSSFTMAHTSSVHPQDPSSLLSFRPIAASSTANIFSLCHPLILQRRGGRS 60

Query: 61  INWVDLNFRRESRDHLVVPALAALAAEIEVPEAVEENGEEAN--TATLIVPKIKKGKAAL 120
            NWVDL F RE RDHLVV   AALAAEIEV E VEENGEE N  TAT  +PKIKKGKAAL
Sbjct: 61  TNWVDLKFGRECRDHLVV---AALAAEIEVAEVVEENGEEGNGGTATSALPKIKKGKAAL 120

Query: 121 PLKRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYND 180
           PLKRDRTRSKRFLEIQKLRE+K EYDLKTAISLLKQ  STKF ETAEAHFRLNIDPKYND
Sbjct: 121 PLKRDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFAETAEAHFRLNIDPKYND 180

Query: 181 QQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIA 240
           QQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIA
Sbjct: 181 QQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIA 240

Query: 241 SPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFG 300
           SPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFG
Sbjct: 241 SPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFG 300

Query: 301 KADFSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPS 358
           KADFSEDDLLVNLL+AIKSVE NKPTGAKGVYWKSAHICSSMGPSIRLN REMLDYKIPS
Sbjct: 301 KADFSEDDLLVNLLSAIKSVEANKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDYKIPS 360

[Close]

BLAST of Cp4.1LG17g07870 vs. TAIR 10
Match: AT3G63490.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 439.9 bits (1130), Expect = 2.0e-123
Identity = 244/360 (67.78%), Postives = 279/360 (77.50%), Query Frame = 0


Query: 3   MATCCPTVHSSLTMAH-TCSVYPQDL---PSLLSFRPIAAPSTAKIFHPLIVRSRGR-KP 62
           MA C    HSSL +A+   S   QDL   PSL SF   A+     +  PL++    R + 
Sbjct: 1   MAAC--ATHSSLMLAYAAASTRSQDLTPTPSLFSF---ASSRPNHLSFPLLLLGGSRDRR 60

Query: 63  INWVDLNFRRESRDHLVVPALAALAAEIEVPEAVEENGEEANTATLIVPKIKKGKAALPL 122
              +D    R S    +V A+AA     E     EE+ E+  TA L  PK KKGKAAL L
Sbjct: 61  CAAID----RASNHKFIVSAVAA-----EADLDTEEDLEQTATAVLDPPKPKKGKAALVL 120

Query: 123 KRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQ 182
           KRDRTRSKRFLEIQKLRE+KKEYD+ TAISLLKQ  +T+FVE+ EAHFRLNIDPKYNDQQ
Sbjct: 121 KRDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQ 180

Query: 183 LRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASP 242
           LRATV+LPKGTGQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFMEFDKLIASP
Sbjct: 181 LRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASP 240

Query: 243 DMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGKA 302
           DMM KVA LGK+LGPRGLMPNPKAGTVT NIPQAI EFK+GKVE+RADKTGIVH+PFGK 
Sbjct: 241 DMMVKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKV 300

Query: 303 DFSEDDLLVNLLAAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDYKIPSSN 358
           +F+E+DLL+N LAA+KSVE NKP GAKGVYWKSAHICSSMGPSI+LN REM+D+K P++N
Sbjct: 301 NFTEEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPTAN 346

[Close]

BLAST of Cp4.1LG17g07870 vs. TAIR 10
Match: AT3G63490.2 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 299.7 bits (766), Expect = 3.2e-81
Identity = 183/299 (61.20%), Postives = 210/299 (70.23%), Query Frame = 0


Query: 3   MATCCPTVHSSLTMAH-TCSVYPQDL---PSLLSFRPIAAPSTAKIFHPLIVRSRGR-KP 62
           MA C    HSSL +A+   S   QDL   PSL SF   A+     +  PL++    R + 
Sbjct: 1   MAAC--ATHSSLMLAYAAASTRSQDLTPTPSLFSF---ASSRPNHLSFPLLLLGGSRDRR 60

Query: 63  INWVDLNFRRESRDHLVVPALAALAAEIEVPEAVEENGEEANTATLIVPKIKKGKAALPL 122
              +D    R S    +V A+AA     E     EE+ E+  TA L  PK KKGKAAL L
Sbjct: 61  CAAID----RASNHKFIVSAVAA-----EADLDTEEDLEQTATAVLDPPKPKKGKAALVL 120

Query: 123 KRDRTRSKRFLEIQKLRESKKEYDLKTAISLLKQMCSTKFVETAEAHFRLNIDPKYNDQQ 182
           KRDRTRSKRFLEIQKLRE+KKEYD+ TAISLLKQ  +T+FVE+ EAHFRLNIDPKYNDQQ
Sbjct: 121 KRDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQ 180

Query: 183 LRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASP 242
           LRATV+LPKGTGQTV VAVL QGEK DEAK+AGAD+VG +DLIEQIKGGFMEFDKLIASP
Sbjct: 181 LRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASP 240

Query: 243 DMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVHLPFGK 297
           DMM KVA LGK+LGPRGLMPNPKAGTVT NIPQ+    ++GK+     K G+     GK
Sbjct: 241 DMMVKVAGLGKILGPRGLMPNPKAGTVTANIPQS---SRRGKLNSEQTKLGLFTFHLGK 282

[Close]

BLAST of Cp4.1LG17g07870 vs. TAIR 10
Match: AT2G42710.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 164.9 bits (416), Expect = 1.2e-40
Identity = 97/255 (38.04%), Postives = 143/255 (56.08%), Query Frame = 0


Query: 90  AVEENGEEANTATLIVPKIKKGKAALPLKRDRTRSKRFLEIQKLRESKKEYDLKTAISLL 149
           AVEE+       TL+ P++K GK                        K  +DL  AI  +
Sbjct: 162 AVEEDTSSLPLPTLLKPELKHGK------------------------KPIFDLMEAIREI 221

Query: 150 KQMCSTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNA 209
           K     KF ET EAH RL I+   ++  +R T+ LP    + VKVA   +G   ++AK A
Sbjct: 222 KGNAKAKFDETLEAHVRLGIEKGRSELIVRGTLALPHSVKKDVKVAFFAEGADAEDAKAA 281

Query: 210 GADLVGGEDLIEQI-KGGFMEFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNI 269
           GAD+VGG +LIE+I K G ++FD+ +A+P MMP+V  + ++L   GLMPNPK G+VT ++
Sbjct: 282 GADVVGGLELIEEILKSGKIDFDRCLATPKMMPRVYKISRILNNHGLMPNPKQGSVTKDV 341

Query: 270 PQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEDDLLVNLLAAIKSVEVNKPTGAKGV-- 329
            +A+ + K G  ++R DKT I+H+P GK  FSE+ L  N+ A + ++ + KP G K    
Sbjct: 342 TKAVKDAKAGHTKFRMDKTSILHVPLGKMSFSEEALRENVGAFMNALLLAKPAGLKKTSK 392

Query: 330 ---YWKSAHICSSMG 339
              Y  + H+CS+MG
Sbjct: 402 YAGYVNAFHLCSTMG 392

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g07870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LE95	1.2e-125	68.17	50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=...	[more]
Q9LY66	2.8e-122	67.78	50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 ...	[more]
P49208	6.7e-76	86.31	50S ribosomal protein L1, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=R...	[more]
B0JNQ5	4.4e-75	60.87	50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 G...	[more]
Q3MA18	3.7e-74	60.00	50S ribosomal protein L1 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937)...	[more]

BLAST of Cp4.1LG17g07870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515181.1	6.53e-254	100.00	50S ribosomal protein L1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022960486.1	1.47e-247	98.32	50S ribosomal protein L1, chloroplastic-like [Cucurbita moschata] >KAG7025633.1 ...	[more]
KAG6593282.1	1.21e-246	98.04	50S ribosomal protein L1, chloroplastic, partial [Cucurbita argyrosperma subsp. ...	[more]
XP_023004585.1	1.33e-237	95.29	50S ribosomal protein L1, chloroplastic-like [Cucurbita maxima]	[more]
XP_022152504.1	7.38e-224	90.63	50S ribosomal protein L1, chloroplastic-like [Momordica charantia]	[more]

BLAST of Cp4.1LG17g07870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H7Q8	7.13e-248	98.32	Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111461210 PE=3 SV=1	[more]
A0A6J1KV03	6.43e-238	95.29	Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111497839 PE=3 SV=1	[more]
A0A6J1DG73	3.57e-224	90.63	Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111020212 PE=3 SV=1	[more]
A0A0A0K886	1.89e-219	89.53	Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_7G420870 PE=3 SV=1	[more]
A0A5D3CGN7	1.27e-217	88.98	Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00...	[more]

BLAST of Cp4.1LG17g07870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63490.1	2.0e-123	67.78	Ribosomal protein L1p/L10e family	[more]
AT3G63490.2	3.2e-81	61.20	Ribosomal protein L1p/L10e family	[more]
AT2G42710.1	1.2e-40	38.04	Ribosomal protein L1p/L10e family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016095	Ribosomal protein L1, 3-layer alpha/beta-sandwich	GENE3D	3.40.50.790		coord: 187..278 e-value: 2.0E-82 score: 277.7
IPR005878	Ribosomal protein L1, bacterial-type	TIGRFAM	TIGR01169	TIGR01169	coord: 123..347 e-value: 9.6E-94 score: 311.0
IPR005878	Ribosomal protein L1, bacterial-type	HAMAP	MF_01318_B	Ribosomal_L1_B	coord: 118..348 score: 39.367043
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	PFAM	PF00687	Ribosomal_L1	coord: 149..339 e-value: 1.2E-47 score: 162.3
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	CDD	cd00403	Ribosomal_L1	coord: 142..343 e-value: 3.9774E-72 score: 221.289
None	No IPR available	GENE3D	3.30.190.20		coord: 140..343 e-value: 2.0E-82 score: 277.7
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 137..350
None	No IPR available	PANTHER	PTHR23105:SF110	MITOCHONDRIAL RIBOSOMAL PROTEIN, LARGE	coord: 137..350
IPR023673	Ribosomal protein L1, conserved site	PROSITE	PS01199	RIBOSOMAL_L1	coord: 240..258
IPR023674	Ribosomal protein L1-like	SUPERFAMILY	56808	Ribosomal protein L1	coord: 126..344

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g07870.1	Cp4.1LG17g07870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding