Cp4.1LG17g03320 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ACATTCTGTCCCGAACCCTTCTTTCTGCCCTCTTCCCCAATGGCCACGCTTTTTCTCTACCACTCCTTCCTCCTCCTTCTCATCGGAACCACCACCACCACCTCCGCCGTTTCCAGCGAGTATTGGTGCGTGGCTCGCAGCGACGTCAGCGACGAGGCGCTACAGACGGCGCTGAACTATGCCTGCGCCACCGGCGCCGATTGCACTCCTATTCTGCCGAACGGCCTATGCTTCCTCCCCAACACCATCCAGGCCCACGCCTCCTACGCCTTCAACAGCTTCTTCCAGCGCAAGGCCATGGCTCCTGGCTCCTGTAACTTCGCCGGCTCCGCCACCATCGCCCACTCCAACCCCANTTTTTTTTTTATGGAAATTAGATTTTTTTTTAATTCTAACAAAAAAAAAATATATATATATATATATATATATATAAAATAATGTTTATTTTGATTAATTTAAGGTTAAACTTTAGGTTTAATTATGTGACATTGTTTGTTTTGTGCAGGTTATGGATCTTGTGTTTATCCATCTTCAATCAGGTAATGCTAATTTTTTTTTCAATTTTTAAAATGAAATATTAGGTTTTATTTATTTATTTATATTATTATAATTTATTTAAAATATGCATTACAAAAACTACCCTTTATTTTATTCTAATTATTGCTGGAGATTTCTTCATGTTCAAGTAAATGGGTTTGGAGAATATTTTATTTTCTTTATTTTTAAATTTTAAACATTTCTTTAAAATATAATTAAAAAATAAAATTATAATGGAGGGTTTCATTATAAAAATCTTGAACTTAAATTAAAATTTTAGTGCCCCTAAATTTTAAAAAATGTATAATAATTCTTTTAATTTTTATAAATTTTAATATTGTTTAAATGATAAATGAAATTATAATTTTGAGTTTAATATTTTTTTTTTTTTTTACATAAAAAGTAGAATCCTAAAAAGAATATTAAATGGGGTCGAACATTTAATTTTTATTTAGATATAAAATTTAAAATTCAAAATTTTAAAATATATTAGATATTTTTTTAAAAACTAAATTAAAACGAATTCTTAATAATTTAAATAGGGTGATATATATATATATATAATATTTTAAAAATCGAATATTTTATTTCTTGTCCAAAGTATTTTTAGTGGGCCTCATCTTAATTAGAGACGGTTGGATCAGTCACGCTGGGGCCCAGGTGGCGGTGAGATCCAACGGTTAGAATAGCATGGATTTACTTTTATAATTTTAAATTAGCTTTTTGACTAAAACGCTGCGTTTTGAGAATCTAGAAGGCTGGTCAAGAATAGTATTGACTTAAATTAAACTTGTCGGAGCAAAGTCTGAAAATAATTAAATAGAAAAAAAATATATTTAAATTACAATTTTAGTTTTTTTTTATCATTAAAAAAATATCTATTAATTTTTTAAAATTTTAATTTCACGTAAAATAAAAGTTAGACCGTTTTTAATTTTATATTTAATTAATATTTATTTTATATTCGATCTAAAATTAAAAATTTAGAGTTTAATTAGACATTAATTTATGTAATAAATATTCGATTTTTTAAATATTATTTTTTATTAAAAAAAAGGAATAAGAATGATAGATGGAGTGATGTTGGGTTGTCCCTAAAGAATCAATTCTTTGATATCATCTTGTCGTAAGAACTTGTCCGACATTTCTTTTCAAATTTGTCTTATTCAAAGAAAACGTTCATCGAGAATAAGAATGAATCGATGTATTGAGTTGTTCTAAAGATCATTTATGATGATTTTTCAGTACTGCAGGAGGAGCAATCACACCGAGCCCTCCAGGAAACACTAGCCCGACAATAACAACACCAACCACAACCACCACCACGCCAAGCTTCAACAACGGTGGTACCGATGACACGAATGGACTAAACCCAGTATACAACCCGACATCTACCAACTCGAAAGCCTCTTCGAGTCTTACGACCTCTAAACTCTTGATCTTGATATGGTTGTCGATTGCTATCTCACTCGCTTCGTAA ACATTCTGTCCCGAACCCTTCTTTCTGCCCTCTTCCCCAATGGCCACGCTTTTTCTCTACCACTCCTTCCTCCTCCTTCTCATCGGAACCACCACCACCACCTCCGCCGTTTCCAGCGAGTATTGGTGCGTGGCTCGCAGCGACGTCAGCGACGAGGCGCTACAGACGGCGCTGAACTATGCCTGCGCCACCGGCGCCGATTGCACTCCTATTCTGCCGAACGGCCTATGCTTCCTCCCCAACACCATCCAGGCCCACGCCTCCTACGCCTTCAACAGCTTCTTCCAGCGCAAGGCCATGGCTCCTGGCTCCTGTTATGGATCTTGTGTTTATCCATCTTCAATCAGTACTGCAGGAGGAGCAATCACACCGAGCCCTCCAGGAAACACTAGCCCGACAATAACAACACCAACCACAACCACCACCACGCCAAGCTTCAACAACGGTGGTACCGATGACACGAATGGACTAAACCCAGTATACAACCCGACATCTACCAACTCGAAAGCCTCTTCGAGTCTTACGACCTCTAAACTCTTGATCTTGATATGGTTGTCGATTGCTATCTCACTCGCTTCGTAA ACATTCTGTCCCGAACCCTTCTTTCTGCCCTCTTCCCCAATGGCCACGCTTTTTCTCTACCACTCCTTCCTCCTCCTTCTCATCGGAACCACCACCACCACCTCCGCCGTTTCCAGCGAGTATTGGTGCGTGGCTCGCAGCGACGTCAGCGACGAGGCGCTACAGACGGCGCTGAACTATGCCTGCGCCACCGGCGCCGATTGCACTCCTATTCTGCCGAACGGCCTATGCTTCCTCCCCAACACCATCCAGGCCCACGCCTCCTACGCCTTCAACAGCTTCTTCCAGCGCAAGGCCATGGCTCCTGGCTCCTGTTATGGATCTTGTGTTTATCCATCTTCAATCAGTACTGCAGGAGGAGCAATCACACCGAGCCCTCCAGGAAACACTAGCCCGACAATAACAACACCAACCACAACCACCACCACGCCAAGCTTCAACAACGGTGGTACCGATGACACGAATGGACTAAACCCAGTATACAACCCGACATCTACCAACTCGAAAGCCTCTTCGAGTCTTACGACCTCTAAACTCTTGATCTTGATATGGTTGTCGATTGCTATCTCACTCGCTTCGTAA TFCPEPFFLPSSPMATLFLYHSFLLLLIGTTTTTSAVSSEYWCVARSDVSDEALQTALNYACATGADCTPILPNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCYGSCVYPSSISTAGGAITPSPPGNTSPTITTPTTTTTTPSFNNGGTDDTNGLNPVYNPTSTNSKASSSLTTSKLLILIWLSIAISLAS Homology
BLAST of Cp4.1LG17g03320 vs. ExPASy Swiss-Prot
Match: Q9FNQ2 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1 OS=Arabidopsis thaliana OX=3702 GN=PDCB1 PE=1 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 1.5e-18 Identity = 68/178 (38.20%), Postives = 93/178 (52.25%), Query Frame = 0
BLAST of Cp4.1LG17g03320 vs. ExPASy Swiss-Prot
Match: Q9FZ86 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana OX=3702 GN=PDCB3 PE=1 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 1.3e-17 Identity = 60/153 (39.22%), Postives = 79/153 (51.63%), Query Frame = 0
BLAST of Cp4.1LG17g03320 vs. ExPASy Swiss-Prot
Match: Q9SD84 (PLASMODESMATA CALLOSE-BINDING PROTEIN 2 OS=Arabidopsis thaliana OX=3702 GN=PDCB2 PE=1 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 8.0e-15 Identity = 77/205 (37.56%), Postives = 100/205 (48.78%), Query Frame = 0
BLAST of Cp4.1LG17g03320 vs. ExPASy Swiss-Prot
Match: Q94G86 (Glucan endo-1,3-beta-D-glucosidase OS=Olea europaea OX=4146 GN=OLE9 PE=1 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 9.7e-13 Identity = 37/97 (38.14%), Postives = 51/97 (52.58%), Query Frame = 0
BLAST of Cp4.1LG17g03320 vs. ExPASy Swiss-Prot
Match: Q84V39 (Major pollen allergen Ole e 10 OS=Olea europaea OX=4146 PE=1 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 8.2e-12 Identity = 40/91 (43.96%), Postives = 53/91 (58.24%), Query Frame = 0
BLAST of Cp4.1LG17g03320 vs. NCBI nr
Match: XP_023514932.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 327 bits (839), Expect = 5.11e-112 Identity = 180/194 (92.78%), Postives = 180/194 (92.78%), Query Frame = 0
BLAST of Cp4.1LG17g03320 vs. NCBI nr
Match: XP_022999864.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 320 bits (819), Expect = 1.41e-108 Identity = 180/206 (87.38%), Postives = 183/206 (88.83%), Query Frame = 0
BLAST of Cp4.1LG17g03320 vs. NCBI nr
Match: XP_022964263.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1-like [Cucurbita moschata]) HSP 1 Score: 305 bits (781), Expect = 3.64e-103 Identity = 173/195 (88.72%), Postives = 175/195 (89.74%), Query Frame = 0
BLAST of Cp4.1LG17g03320 vs. NCBI nr
Match: KAG7026109.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 305 bits (780), Expect = 5.16e-103 Identity = 173/195 (88.72%), Postives = 175/195 (89.74%), Query Frame = 0
BLAST of Cp4.1LG17g03320 vs. NCBI nr
Match: XP_038875835.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Benincasa hispida]) HSP 1 Score: 239 bits (611), Expect = 5.48e-77 Identity = 147/202 (72.77%), Postives = 151/202 (74.75%), Query Frame = 0
BLAST of Cp4.1LG17g03320 vs. ExPASy TrEMBL
Match: A0A6J1KIB1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111494211 PE=4 SV=1) HSP 1 Score: 320 bits (819), Expect = 6.83e-109 Identity = 180/206 (87.38%), Postives = 183/206 (88.83%), Query Frame = 0
BLAST of Cp4.1LG17g03320 vs. ExPASy TrEMBL
Match: A0A6J1HKA9 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1-like OS=Cucurbita moschata OX=3662 GN=LOC111464333 PE=4 SV=1) HSP 1 Score: 305 bits (781), Expect = 1.76e-103 Identity = 173/195 (88.72%), Postives = 175/195 (89.74%), Query Frame = 0
BLAST of Cp4.1LG17g03320 vs. ExPASy TrEMBL
Match: A0A1S3C4M3 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Cucumis melo OX=3656 GN=LOC103496965 PE=4 SV=1) HSP 1 Score: 231 bits (588), Expect = 5.23e-74 Identity = 141/202 (69.80%), Postives = 151/202 (74.75%), Query Frame = 0
BLAST of Cp4.1LG17g03320 vs. ExPASy TrEMBL
Match: A0A6J1H812 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like OS=Cucurbita moschata OX=3662 GN=LOC111460407 PE=4 SV=1) HSP 1 Score: 230 bits (586), Expect = 9.23e-74 Identity = 144/200 (72.00%), Postives = 149/200 (74.50%), Query Frame = 0
BLAST of Cp4.1LG17g03320 vs. ExPASy TrEMBL
Match: A0A6J1KVB1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Cucurbita maxima OX=3661 GN=LOC111499021 PE=4 SV=1) HSP 1 Score: 225 bits (574), Expect = 6.15e-72 Identity = 141/200 (70.50%), Postives = 147/200 (73.50%), Query Frame = 0
BLAST of Cp4.1LG17g03320 vs. TAIR 10
Match: AT4G13600.1 (Carbohydrate-binding X8 domain superfamily protein ) HSP 1 Score: 146.0 bits (367), Expect = 3.2e-35 Identity = 100/201 (49.75%), Postives = 119/201 (59.20%), Query Frame = 0
BLAST of Cp4.1LG17g03320 vs. TAIR 10
Match: AT1G13830.1 (Carbohydrate-binding X8 domain superfamily protein ) HSP 1 Score: 94.7 bits (234), Expect = 8.4e-20 Identity = 73/189 (38.62%), Postives = 97/189 (51.32%), Query Frame = 0
BLAST of Cp4.1LG17g03320 vs. TAIR 10
Match: AT5G61130.1 (plasmodesmata callose-binding protein 1 ) HSP 1 Score: 94.4 bits (233), Expect = 1.1e-19 Identity = 68/178 (38.20%), Postives = 93/178 (52.25%), Query Frame = 0
BLAST of Cp4.1LG17g03320 vs. TAIR 10
Match: AT1G18650.1 (plasmodesmata callose-binding protein 3 ) HSP 1 Score: 91.3 bits (225), Expect = 9.3e-19 Identity = 60/153 (39.22%), Postives = 79/153 (51.63%), Query Frame = 0
BLAST of Cp4.1LG17g03320 vs. TAIR 10
Match: AT5G08000.1 (glucan endo-1,3-beta-glucosidase-like protein 3 ) HSP 1 Score: 82.0 bits (201), Expect = 5.6e-16 Identity = 77/205 (37.56%), Postives = 100/205 (48.78%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|