Cp4.1LG17g02950 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g02950
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	upstream activation factor subunit spp27-like
Location	Cp4.1LG17: 1901543 .. 1904658 (+)
RNA-Seq Expression	Cp4.1LG17g02950
Synteny	Cp4.1LG17g02950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGCACCGGAAGTCCAATCATCATGGGCCGAAACCAAGGGCAGCCCATTTCTGTTGGGCCCCCAATTTCTTCTGCTCAGTTTAAAAGCTCCATTTCCCCTCTGCTGCTCAGTCTCAGACTCTCAGTCGATCAAAAGCGGCAAAAACCCCTAAAGTTCGAACCCAAGCGCCGTCTTCCCCGGAGCAAAATGGCGTCAGGTCTTAACAATGGCACTAGGTTATTCAGAGGTTGCAGAACCCTCTTAGATTCACTCAAGTCCACCACTCAAGCTTACTCTTCTGCTGCTGCGGTTTCTCCCAAGGGGAAGCTAAAAGCTTCAGGTGCCGCTGCTTCCCGCAAAAACTCGGAAGCCGGAGAGAAGAAAGAGGTGAATCGTTCGGGGGGGATTTTTAAGTCCGTCCAGGTTTCTCCGGCTCTCGCTGGCTTCCTCGGCATGTCCGAGTCTTCGCGTCCTGAAGCCGTCAAGCAAATATGGTCCTACATCAAGCTGAATAATCTCCAGGTTCTTTTCATTTCTCTTGTTTTTGCNCTGTTGCTGCACTTTGTGACGAAAACTTATATCCGAAAGAAGTCTTTGATGATCAAGATTTTTTTGTACCTAATGGATTGTGTTCTAGTTCCTTGTTTCCTGCAGCCTGTTCGTTTGCCTCGTTAATTTCTCCTTCATTTTGTTGAGATTGCCTTGAAAGTTGATTTTAACTCATCTTAGAGCTTGAATTTTGGATGTAGTGTTGGTTTCTTATAGTTTCTTCCTTTTTGTACTTAGTTGCTGAATCTAAGGCCCATGAAATGGAAGTTCTGAATTCGAAAAATAGGTTAATTTATAGGGAAACTCCCACTATTAATTCACGAACCAAATAATTCTCAAGTCTTAGCGATCGAATTTGTAATTTATTAGATGAACATGGACCATCTATACCCTCTGTTCCCAAGTTTTATCTACCTTGAATAATCAACAAGCTATTTTGGCCATAAATGCATTTATTGTCACATGGACTTGGGTTTGTGCCCTTCTTCAGAAAAAGTTAGCTACTACTCAGAGGTGGGAGCTCCTACCTAAATCCCCGTCCAATATTCTTTAGGAAAGCCCCCCTGATGTCCAATTTTGAGTGTAAATACTTTCATTGAAGTTCATAAATAGTTTCTAAGATTTGATGAAATCTTCATAAATAATAGTCTCTATTGAAGGGACTATTTAGGAGTATTTTATCAAACTATAGGAACTAAATTATAACTTTCGATGCTATTTAGAACAAGTTATACAATACATAAACTCCTTAACATAGTTCAGGTTAATAAATTAGAACTCATCATATTTTAGAAAGGGTTGCAACAAATTAATAGTTTTTTTTAATATTTTTTTATAAGAGATAATTTCATTAATCTTTGAAGTTTACAAAGAGGATATAATATCAAGAGGTTTACAAAAAAAAACCTTCCCAATTTACAATGAAAGAGGTATACTGTAGGAAGCGAAAATATTAGATAGCCTACACCAAGATATATAGCTTGATAAACAACACTATCGAAGAGTTTTATATAAATTTAGGTCTTTTTCATGAAAATTCTTTGATTTCTTTCTTTCCACTTATCCATAAGAAAGCCATGATGAATTATTTTTTTTCATAGTAGAGTTTTTTTCATTCTTGAAAGAAGGGTGCCATGTACAAATCAGTAGTTATAGTAGTAGTTGCCTGCCACATCTAACCAATTTAGTCAATATCTATCTGATGTGGTAAGTCAAGCTAGTATCCTGTTAACGGTGTAACTGTAGAGATTAACCTAGTAGTTCCTCTTTTCTTCCTTTTCTTTTTTATTTGGAAGATTTTGCTGATATATAACACACATTATGGTGTGCAGAACCCAGCTAATAAGAGGCAGATCAATTGTGATGAAAAGCTAAAGGCCATATTTGATGGAAGAGAGAATGTGGGGATCTTAGAGATCGGAAAATTGCTATCCGCTCATTTTGTGAAGTCGTCTAGTTAACCTCAAACTTCCAATGCAAACTTCCAATGCATGTATCGACTTAGTCGTTCTAACAGTTATCTCTCAACCTGTCTTCCAAATCGCTGAGATGATGTTGTGCTGTGTTTGGCTAATCTTAGGTACTCCTTGGTTTGCCTCTGCTTTAAGAAAAAGGGTATTTCATACCCAGACCTTATTGTTGATTATGGCTAGCTTTTAAATGGTTTTCATTCAATGTTGGTCTCCTTGCTTCATAAGAATATTTCCAATGGTTTCTATCACTTTGTTGAACAAACTAAAAAATTTGATCCCTATATGTGGAATAACTAGCAAAACAACTACAAACAATATGGAGCTGGATTTAAATGTTAGTGTTAGTTTGTTAGATCATAAACAAAAGTGCACAAGAAGTAACATAACAAGGAGGAATGGAAAAATGAATAAATTTATTGATTTGTGAGTCAATTAAGACAGATAATGAAAGGGGTGAGCAAGAAGATTAATTGAGAAGATGATGAACCCATTGATCAAGAATAGAGGGTGAACCATACCAGGGTCTGAGTTCATCATCAGAGCCAACTGGGGAGTGATAGACTCCATCAAAGCTAACGTTGATAGCTCCCTCCAAATGGGCAGACACTTCTGGAACCACCCCATCTCCCCATACCTCACTCTCCCCACACACCTGAATCATGTCAGTCATACATCTGACATTAGTATTTTTATTTATTTTTATTTTTTTAGTTCAATATATGGAACCGAGCAGAGATTCAAAATTTTGATCTTTTGGTTGATGATACATATCAACTTTTAACATATCTAACCTGTTCTAACCTGTTCTATATTCATAATGAATATACCATCAATTGTCCAATGTTTTTAAATTTATTACCTGCTTATATCCTTGCCCGACGAAGCGAGCGCGGAATGTGGGTGTGTTTGCGATGGTTAACTCTGGAGCTGGTTGGTTGTTGGTGATGGAAGCAGCTGCAGGAATGGTGTTTGCATCAGAGTAACTGAACAAGCGAGCCCCTTGGATGTACCTGCATTTGGCAATGCCCGGTTTGACACAGTTCTCAGTACATTTTTATAAGTAGACTCGAGGAGTAAAGTCTGAAGTTAACATAGTTAATTTGATAATCCATCA

mRNA sequence

GTGGCACCGGAAGTCCAATCATCATGGGCCGAAACCAAGGGCAGCCCATTTCTGTTGGGCCCCCAATTTCTTCTGCTCAGTTTAAAAGCTCCATTTCCCCTCTGCTGCTCAGTCTCAGACTCTCAGTCGATCAAAAGCGGCAAAAACCCCTAAAGTTCGAACCCAAGCGCCGTCTTCCCCGGAGCAAAATGGCGTCAGGTCTTAACAATGGCACTAGGTTATTCAGAGGTTGCAGAACCCTCTTAGATTCACTCAAGTCCACCACTCAAGCTTACTCTTCTGCTGCTGCGGTTTCTCCCAAGGGGAAGCTAAAAGCTTCAGGTGCCGCTGCTTCCCGCAAAAACTCGGAAGCCGGAGAGAAGAAAGAGGTGAATCGTTCGGGGGGGATTTTTAAGTCCGTCCAGGTTTCTCCGGCTCTCGCTGGCTTCCTCGGCATGTCCGAGTCTTCGCGTCCTGAAGCCGTCAAGCAAATATGGTCCTACATCAAGCTGAATAATCTCCAGAACCCAGCTAATAAGAGGCAGATCAATTGTGATGAAAAGCTAAAGGCCATATTTGATGGAAGAGAGAATGTGGGGATCTTAGAGATCGGAAAATTGCTATCCGCTCATTTTGTGAAGTCGTCTAGTTAACCTCAAACTTCCAATGCAAACTTCCAATGCATGTATCGACTTAGTCGTTCTAACAGTTATCTCTCAACCTGTCTTCCAAATCGCTGAGATGATGTTGTGCTGTGTTTGGCTAATCTTAGGTACTCCTTGGTTTGCCTCTGCTTTAAGAAAAAGGGTATTTCATACCCAGACCTTATTGTTGATTATGGCTAGCTTTTAAATGGTTTTCATTCAATGTTGGTCTCCTTGCTTCATAAGAATATTTCCAATGGTTTCTATCACTTTGTTGAACAAACTAAAAAATTTGATCCCTATATGTGGAATAACTAGCAAAACAACTACAAACAATATGGAGCTGGATTTAAATGTTAGTGTTAGTTTGTTAGATCATAAACAAAAGTGCACAAGAAGTAACATAACAAGGAGGAATGGAAAAATGAATAAATTTATTGATTTGTGAGTCAATTAAGACAGATAATGAAAGGGGTGAGCAAGAAGATTAATTGAGAAGATGATGAACCCATTGATCAAGAATAGAGGGTGAACCATACCAGGGTCTGAGTTCATCATCAGAGCCAACTGGGGAGTGATAGACTCCATCAAAGCTAACGTTGATAGCTCCCTCCAAATGGGCAGACACTTCTGGAACCACCCCATCTCCCCATACCTCACTCTCCCCACACACCTGAATCATGTCAGTCATACATCTGACATTAGTATTTTTATTTATTTTTATTTTTTTAGTTCAATATATGGAACCGAGCAGAGATTCAAAATTTTGATCTTTTGGTTGATGATACATATCAACTTTTAACATATCTAACCTGTTCTAACCTGTTCTATATTCATAATGAATATACCATCAATTGTCCAATGTTTTTAAATTTATTACCTGCTTATATCCTTGCCCGACGAAGCGAGCGCGGAATGTGGGTGTGTTTGCGATGGTTAACTCTGGAGCTGGTTGGTTGTTGGTGATGGAAGCAGCTGCAGGAATGGTGTTTGCATCAGAGTAACTGAACAAGCGAGCCCCTTGGATGTACCTGCATTTGGCAATGCCCGGTTTGACACAGTTCTCAGTACATTTTTATAAGTAGACTCGAGGAGTAAAGTCTGAAGTTAACATAGTTAATTTGATAATCCATCA

Coding sequence (CDS)

ATGGGCCGAAACCAAGGGCAGCCCATTTCTGTTGGGCCCCCAATTTCTTCTGCTCAGTTTAAAAGCTCCATTTCCCCTCTGCTGCTCAGTCTCAGACTCTCAGTCGATCAAAAGCGGCAAAAACCCCTAAAGTTCGAACCCAAGCGCCGTCTTCCCCGGAGCAAAATGGCGTCAGGTCTTAACAATGGCACTAGGTTATTCAGAGGTTGCAGAACCCTCTTAGATTCACTCAAGTCCACCACTCAAGCTTACTCTTCTGCTGCTGCGGTTTCTCCCAAGGGGAAGCTAAAAGCTTCAGGTGCCGCTGCTTCCCGCAAAAACTCGGAAGCCGGAGAGAAGAAAGAGGTGAATCGTTCGGGGGGGATTTTTAAGTCCGTCCAGGTTTCTCCGGCTCTCGCTGGCTTCCTCGGCATGTCCGAGTCTTCGCGTCCTGAAGCCGTCAAGCAAATATGGTCCTACATCAAGCTGAATAATCTCCAGAACCCAGCTAATAAGAGGCAGATCAATTGTGATGAAAAGCTAAAGGCCATATTTGATGGAAGAGAGAATGTGGGGATCTTAGAGATCGGAAAATTGCTATCCGCTCATTTTGTGAAGTCGTCTAGTTAA

Protein sequence

MGRNQGQPISVGPPISSAQFKSSISPLLLSLRLSVDQKRQKPLKFEPKRRLPRSKMASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGKLKASGAAASRKNSEAGEKKEVNRSGGIFKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSAHFVKSSS

Homology

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BLAST of Cp4.1LG17g02950 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.3e-11
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = 0


Query: 93  KGKLKASGAAASRKNSEAGEKKEVNR---SGGIFKSVQVSPALAGFLGMSESSRPEAVKQ 152
           +GK  A      +++ E G K++ N+   +  + K +++SP LA FLG+ + SRP+ VK+
Sbjct: 85  EGKKPAKRTRKRKEDGEEGGKRKRNQDPANNPLNKPMKLSPKLAEFLGLEQLSRPQTVKK 144

Query: 153 IWSYIKLNNLQNPANKRQINCDEKLKAIFD 180
           +W YIK ++LQ+P +KR I CD+KLK++F+
Sbjct: 145 LWEYIKAHDLQDPNDKRTILCDDKLKSVFE 174

[Close]

BLAST of Cp4.1LG17g02950 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.2e-09
Identity = 45/132 (34.09%), Postives = 73/132 (55.30%), Query Frame = 0


Query: 71  RTLLDSLK-STTQAYSSAAAVSPKGKLKASGAAASRKNSEAGEKKE--VNRSGGIFKSVQ 130
           R+L D LK + T A      ++   +        S       EKK+  V++S    + V 
Sbjct: 66  RSLEDLLKENATLAIELTKEITVSKRSSGEEKNDSETKGTHVEKKKGTVSKSPISTRKVT 125

Query: 131 VSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFDGRENVGIL 190
           +S +LA  LG  E +R E V+++W+YIK +NLQNP NK++I CDEKL+ I    ++  + 
Sbjct: 126 LSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILG--KSTNMF 185

Query: 191 EIGKLLSAHFVK 200
           E+ K+L++H  +
Sbjct: 186 EMHKILASHMTE 195

[Close]

BLAST of Cp4.1LG17g02950 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.7e-07
Identity = 41/126 (32.54%), Postives = 65/126 (51.59%), Query Frame = 0


Query: 75  DSLKSTTQAYSSAAAVSPKGKLKASGAAASRKNSEAGEKKEVNRSGG----IFKSVQVSP 134
           + L S  Q  S       +  L+++     +  S++  KK+ N S        + V +S 
Sbjct: 69  NDLISRDQELSLRLQKEEERPLRSTRKRKGKSESKSKRKKKKNDSPDSNSISVRKVLLSA 128

Query: 135 ALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFDGRENVGILEIG 194
            L  FLG  E  R + VK IW YIK ++LQNP ++R+I CDEK++ IF   + + +  + 
Sbjct: 129 PLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFG--KKMTMFSMN 188

Query: 195 KLLSAH 197
           KLL+ H
Sbjct: 189 KLLTKH 192

[Close]

BLAST of Cp4.1LG17g02950 vs. ExPASy Swiss-Prot
Match: Q9P7S3 (SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ssr3 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.1e-05
Identity = 28/88 (31.82%), Postives = 48/88 (54.55%), Query Frame = 0


Query: 92  PKGKLKASGAAASRKNSEAGEKKEVNRSGGIFKSVQVSPALAGFLGMSESSRPEAVKQIW 151
           P     ++G   +RK  ++ + K +       +  ++S A A  LG+ E +RP+ V  +W
Sbjct: 172 PDNSNTSNGITVTRKGDQSVDVKIMLYPEEHPERYKLSKAFANILGIREGTRPDIVSYLW 231

Query: 152 SYIKLNNLQNPANKRQINCDEKLKAIFD 180
            YIK + LQ+   KR INCD+ L+ +F+
Sbjct: 232 QYIKFHRLQDMEEKRLINCDKALRDLFE 259

[Close]

BLAST of Cp4.1LG17g02950 vs. ExPASy Swiss-Prot
Match: Q9FMT4 (SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g14170 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.5e-05
Identity = 24/70 (34.29%), Postives = 37/70 (52.86%), Query Frame = 0


Query: 127 QVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFDGRENVGI 186
           ++S AL   LG+   +RP  +  IW Y+K   LQNP +    NCD  L+ +F G E +  
Sbjct: 320 KLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVF-GEEKLKF 379

Query: 187 LEIGKLLSAH 197
             + + +S H
Sbjct: 380 TMVSQKISHH 388

[Close]

BLAST of Cp4.1LG17g02950 vs. NCBI nr
Match: XP_023514456.1 (upstream activation factor subunit UAF30-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 379 bits (973), Expect = 3.66e-132
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MGRNQGQPISVGPPISSAQFKSSISPLLLSLRLSVDQKRQKPLKFEPKRRLPRSKMASGL 60
           MGRNQGQPISVGPPISSAQFKSSISPLLLSLRLSVDQKRQKPLKFEPKRRLPRSKMASGL
Sbjct: 1   MGRNQGQPISVGPPISSAQFKSSISPLLLSLRLSVDQKRQKPLKFEPKRRLPRSKMASGL 60

Query: 61  NNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGKLKASGAAASRKNSEAGEKKEVNRSG 120
           NNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGKLKASGAAASRKNSEAGEKKEVNRSG
Sbjct: 61  NNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGKLKASGAAASRKNSEAGEKKEVNRSG 120

Query: 121 GIFKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFDG 180
           GIFKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFDG
Sbjct: 121 GIFKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFDG 180

Query: 181 RENVGILEIGKLLSAHFVKSSS 202
           RENVGILEIGKLLSAHFVKSSS
Sbjct: 181 RENVGILEIGKLLSAHFVKSSS 202

[Close]

BLAST of Cp4.1LG17g02950 vs. NCBI nr
Match: KAG6593745.1 (hypothetical protein SDJN03_13221, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 266 bits (679), Expect = 3.43e-88
Identity = 142/147 (96.60%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 56  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGKLKASGAAASRKNSEAGEKKE 115
           MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKG+LKASGAAASRK SEAGEKKE
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAASRKKSEAGEKKE 60

Query: 116 VNRSGGIFKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 175
            NRSGGI KSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLK
Sbjct: 61  GNRSGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 120

Query: 176 AIFDGRENVGILEIGKLLSAHFVKSSS 202
           AIFDGRENVGILEIGKLLS HFVKSSS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKSSS 147

[Close]

BLAST of Cp4.1LG17g02950 vs. NCBI nr
Match: XP_023000110.1 (upstream activation factor subunit spp27-like [Cucurbita maxima])

HSP 1 Score: 263 bits (672), Expect = 4.00e-87
Identity = 141/147 (95.92%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 56  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGKLKASGAAASRKNSEAGEKKE 115
           MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKG+LKASGAAASRK SEAGEKKE
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAASRKKSEAGEKKE 60

Query: 116 VNRSGGIFKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 175
            NRSGGIFKSVQVSPALAGFLGMSESSR EAVKQIWSYIKLN+LQNPANKRQINCDEKLK
Sbjct: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120

Query: 176 AIFDGRENVGILEIGKLLSAHFVKSSS 202
           AIFDGRENVGILEIGKLLS HFVKSSS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKSSS 147

[Close]

BLAST of Cp4.1LG17g02950 vs. NCBI nr
Match: XP_023000111.1 (upstream activation factor subunit spp27-like [Cucurbita maxima])

HSP 1 Score: 262 bits (669), Expect = 1.14e-86
Identity = 140/147 (95.24%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 56  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGKLKASGAAASRKNSEAGEKKE 115
           MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKG+LKASGAAA+RK SEAGEKKE
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAATRKKSEAGEKKE 60

Query: 116 VNRSGGIFKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 175
            NRSGGIFKSVQVSPALAGFLGMSESSR EAVKQIWSYIKLN+LQNPANKRQINCDEKLK
Sbjct: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120

Query: 176 AIFDGRENVGILEIGKLLSAHFVKSSS 202
           AIFDGRENVGILEIGKLLS HFVKSSS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKSSS 147

[Close]

BLAST of Cp4.1LG17g02950 vs. NCBI nr
Match: KAG6593744.1 (hypothetical protein SDJN03_13220, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 260 bits (665), Expect = 4.65e-86
Identity = 139/147 (94.56%), Postives = 141/147 (95.92%), Query Frame = 0


Query: 56  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGKLKASGAAASRKNSEAGEKKE 115
           MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKG++KASGAAASRK SEAGEKKE
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKASGAAASRKKSEAGEKKE 60

Query: 116 VNRSGGIFKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 175
            NRSGGI KSVQVSPALAGFLGMSESSR EAVKQIWSYIKLNNLQNPANKRQINCDEKLK
Sbjct: 61  GNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 120

Query: 176 AIFDGRENVGILEIGKLLSAHFVKSSS 202
           AIFDGRENVG LEIGKLLS HFVKSSS
Sbjct: 121 AIFDGRENVGFLEIGKLLSPHFVKSSS 147

[Close]

BLAST of Cp4.1LG17g02950 vs. ExPASy TrEMBL
Match: A0A6J1KHF5 (upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC111494404 PE=4 SV=1)

HSP 1 Score: 263 bits (672), Expect = 1.93e-87
Identity = 141/147 (95.92%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 56  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGKLKASGAAASRKNSEAGEKKE 115
           MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKG+LKASGAAASRK SEAGEKKE
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAASRKKSEAGEKKE 60

Query: 116 VNRSGGIFKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 175
            NRSGGIFKSVQVSPALAGFLGMSESSR EAVKQIWSYIKLN+LQNPANKRQINCDEKLK
Sbjct: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120

Query: 176 AIFDGRENVGILEIGKLLSAHFVKSSS 202
           AIFDGRENVGILEIGKLLS HFVKSSS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKSSS 147

[Close]

BLAST of Cp4.1LG17g02950 vs. ExPASy TrEMBL
Match: A0A6J1KEZ2 (upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC111494406 PE=4 SV=1)

HSP 1 Score: 262 bits (669), Expect = 5.54e-87
Identity = 140/147 (95.24%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 56  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGKLKASGAAASRKNSEAGEKKE 115
           MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKG+LKASGAAA+RK SEAGEKKE
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAATRKKSEAGEKKE 60

Query: 116 VNRSGGIFKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 175
            NRSGGIFKSVQVSPALAGFLGMSESSR EAVKQIWSYIKLN+LQNPANKRQINCDEKLK
Sbjct: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120

Query: 176 AIFDGRENVGILEIGKLLSAHFVKSSS 202
           AIFDGRENVGILEIGKLLS HFVKSSS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKSSS 147

[Close]

BLAST of Cp4.1LG17g02950 vs. ExPASy TrEMBL
Match: A0A5D3DMJ2 (Protein TRI1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00610 PE=4 SV=1)

HSP 1 Score: 195 bits (496), Expect = 1.12e-60
Identity = 104/145 (71.72%), Postives = 116/145 (80.00%), Query Frame = 0


Query: 56  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGKLKASGAAASRKNSEAGEKKE 115
           MASGL+NGTR FRGC+TLLDSLK TTQAYSS  AVS K KLK   AA S + S+A  K++
Sbjct: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60

Query: 116 VNRSGGIFKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 175
            N SGGI KS++VSP LAGFLG SE SR +A+KQIWSYIKLNNLQN  +KRQINCD KLK
Sbjct: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120

Query: 176 AIFDGRENVGILEIGKLLSAHFVKS 200
           AIF GRE VG+LEI K LS HFVKS
Sbjct: 121 AIFGGREKVGMLEISKFLSPHFVKS 145

[Close]

BLAST of Cp4.1LG17g02950 vs. ExPASy TrEMBL
Match: A0A1S3CBA0 (protein TRI1-like OS=Cucumis melo OX=3656 GN=LOC103499003 PE=4 SV=1)

HSP 1 Score: 195 bits (496), Expect = 1.12e-60
Identity = 104/145 (71.72%), Postives = 116/145 (80.00%), Query Frame = 0


Query: 56  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGKLKASGAAASRKNSEAGEKKE 115
           MASGL+NGTR FRGC+TLLDSLK TTQAYSS  AVS K KLK   AA S + S+A  K++
Sbjct: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60

Query: 116 VNRSGGIFKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 175
            N SGGI KS++VSP LAGFLG SE SR +A+KQIWSYIKLNNLQN  +KRQINCD KLK
Sbjct: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120

Query: 176 AIFDGRENVGILEIGKLLSAHFVKS 200
           AIF GRE VG+LEI K LS HFVKS
Sbjct: 121 AIFGGREKVGMLEISKFLSPHFVKS 145

[Close]

BLAST of Cp4.1LG17g02950 vs. ExPASy TrEMBL
Match: A0A0A0KCY9 (SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G078570 PE=4 SV=1)

HSP 1 Score: 186 bits (471), Expect = 6.98e-57
Identity = 102/145 (70.34%), Postives = 112/145 (77.24%), Query Frame = 0


Query: 56  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGKLKASGAAASRKNSEAGEKKE 115
           MASGL+NGTR F+GCRTLLDSLKSTTQAYSS   VS K  LK S AA S + S+   KK 
Sbjct: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60

Query: 116 VNRSGGIFKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 175
            N SGG+ K+ +VSP LAGFLG SE +R EAVKQIW YIKLNNLQNP +KRQI CD KLK
Sbjct: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120

Query: 176 AIFDGRENVGILEIGKLLSAHFVKS 200
           AIF GRE VG+LEI K LS HFVKS
Sbjct: 121 AIFGGREKVGMLEIPKFLSIHFVKS 145

[Close]

BLAST of Cp4.1LG17g02950 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 118.6 bits (296), Expect = 5.7e-27
Identity = 68/137 (49.64%), Postives = 92/137 (67.15%), Query Frame = 0


Query: 66  LFRGCRTLL-DSLKSTTQAYSSAAAVSPKGKLKASGAAASRKNSEAGEKKEVNRSGGIFK 125
           +FRG R+LL  + ++T+   S+ +   P  K KA      +  S++  KK   RS GIFK
Sbjct: 8   VFRGARSLLAPASRATSSLVSAGSTKKPAAKPKAKAKPKPKAKSDSPAKK-TPRSTGIFK 67

Query: 126 SVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFDGRENV 185
              VSP LA FLG  E+SR +A+K IW+YIK ++LQNPA+KR+I CDE LK IF+G++ V
Sbjct: 68  VTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGKDKV 127

Query: 186 GILEIGKLLSAHFVKSS 202
           G LEI KLLS HFVK++
Sbjct: 128 GFLEISKLLSPHFVKTA 143

[Close]

BLAST of Cp4.1LG17g02950 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 105.1 bits (261), Expect = 6.5e-23
Identity = 57/100 (57.00%), Postives = 68/100 (68.00%), Query Frame = 0


Query: 102 AASRKNSEAGEKKEVNRSGGIFKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQN 161
           AAS   ++ G      +  GI K V VS  LA F+G +E SR  AVK+IW YIKLNNLQN
Sbjct: 15  AASSTGAKTG-----RQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQN 74

Query: 162 PANKRQINCDEKLKAIFDGRENVGILEIGKLLSAHFVKSS 202
           P NKR+I CDE+LK IF G++ VG LEI KLLS HF KS+
Sbjct: 75  PVNKREILCDEQLKTIFSGKDTVGFLEISKLLSQHFPKSA 109

[Close]

BLAST of Cp4.1LG17g02950 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 102.1 bits (253), Expect = 5.5e-22
Identity = 56/102 (54.90%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 99  SGAAASRKNSEAGEKKEVNRSGGIFKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNN 158
           S AA     + AGE K      GIFK+  VS  LA F G  E +R  A+K++W Y+KL+N
Sbjct: 16  SKAATVEAVTVAGEGK------GIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHN 75

Query: 159 LQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSAHFVKS 201
           LQNPANK++I+CD+KLK IFDG++ VGI EI KLLS HF KS
Sbjct: 76  LQNPANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHFPKS 111

[Close]

BLAST of Cp4.1LG17g02950 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-17
Identity = 48/100 (48.00%), Postives = 65/100 (65.00%), Query Frame = 0


Query: 99  SGAAASRKNSEAGEKKEVNRSGGIFKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNN 158
           S AAAS   +   + +E     GI K   VS A+   +G+ E  R +A+K+IW+YIK ++
Sbjct: 48  SAAAASSDPTTTTKTREPR---GIMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHD 107

Query: 159 LQNPANKRQINCDEKLKAIFDGRENVGILEIGKLLSAHFV 199
           LQ+P NKR I CDEKLK IF+G+E VG LEI KL+  HF+
Sbjct: 108 LQDPQNKRDILCDEKLKKIFEGKERVGFLEIAKLIGPHFL 144

[Close]

BLAST of Cp4.1LG17g02950 vs. TAIR 10
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 86.3 bits (212), Expect = 3.1e-17
Identity = 55/135 (40.74%), Postives = 73/135 (54.07%), Query Frame = 0


Query: 64  TRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGKLKASGAAASRKNSEAGEKKEVNRSGGIF 123
           T  FR   T L SL+          A  P  KL+   A  S   S            GI 
Sbjct: 16  TTSFRNPSTPLSSLR---------FASHPAAKLRLVRAVTSATESSEPTATNKRVPRGIM 75

Query: 124 KSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLKAIFDGREN 183
           K   VSP +   + + E +R +A+K+IW+YIK ++LQ+P NKR+I CDEKLK IF+GR+ 
Sbjct: 76  KPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDR 135

Query: 184 VGILEIGKLLSAHFV 199
           VG LEI KL+  HF+
Sbjct: 136 VGFLEIAKLIGPHFL 141

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g02950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O74503	3.3e-11	40.00	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q08747	5.2e-09	34.09	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]
Q05024	3.7e-07	32.54	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]
Q9P7S3	2.1e-05	31.82	SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 ...	[more]
Q9FMT4	3.5e-05	34.29	SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g1...	[more]

BLAST of Cp4.1LG17g02950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023514456.1	3.66e-132	100.00	upstream activation factor subunit UAF30-like [Cucurbita pepo subsp. pepo]	[more]
KAG6593745.1	3.43e-88	96.60	hypothetical protein SDJN03_13221, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023000110.1	4.00e-87	95.92	upstream activation factor subunit spp27-like [Cucurbita maxima]	[more]
XP_023000111.1	1.14e-86	95.24	upstream activation factor subunit spp27-like [Cucurbita maxima]	[more]
KAG6593744.1	4.65e-86	94.56	hypothetical protein SDJN03_13220, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cp4.1LG17g02950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KHF5	1.93e-87	95.92	upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1KEZ2	5.54e-87	95.24	upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A5D3DMJ2	1.12e-60	71.72	Protein TRI1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00...	[more]
A0A1S3CBA0	1.12e-60	71.72	protein TRI1-like OS=Cucumis melo OX=3656 GN=LOC103499003 PE=4 SV=1	[more]
A0A0A0KCY9	6.98e-57	70.34	SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G078570 PE=4 S...	[more]

BLAST of Cp4.1LG17g02950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03590.1	5.7e-27	49.64	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	6.5e-23	57.00	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	5.5e-22	54.90	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	2.4e-17	48.00	SWIB/MDM2 domain superfamily protein	[more]
AT2G14880.1	3.1e-17	40.74	SWIB/MDM2 domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 122..202 e-value: 5.1E-30 score: 115.7
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 125..197 e-value: 1.1E-29 score: 102.0
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 121..199 score: 21.587252
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 116..202 e-value: 1.3E-27 score: 97.5
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 119..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..62
None	No IPR available	PANTHER	PTHR13844:SF67	PROTEIN TRI1	coord: 63..200
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 63..200
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 126..197 e-value: 5.63724E-34 score: 113.792

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g02950.1	Cp4.1LG17g02950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus