Cp4.1LG16g08670 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG16g08670
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionphotosystem II 5 kDa protein, chloroplastic
LocationCp4.1LG16: 8280701 .. 8295433 (+)
RNA-Seq ExpressionCp4.1LG16g08670
SyntenyCp4.1LG16g08670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTACTTTCAACCTTATTCCACTTAACCTGTTGAATTTTCAAAATTCAAATTTTTGTCCTTATAAATTCAATATATCTTAAATCTACCACTTATTATTATTATTATTATTTTTCTTTTTTTTTTGTAAAGAGAAGTTGTAATTATTGTTCTTGTAGAACAGCGGTAGAAACGCTTGGTTGTGAATCTAGCATGTAAAGAGAAGTTGTAATTGGGCAAAGAGATAAAGGGGAACACGTGGCAAGAGGGCATTGGTTAGAAAATGTGATAGGATAAGGAAATGGATGATGTTTGAATGAAGAATGAGCAGAAGGAGGGTTGAATCATCTGGACACACTCCCAAACATAAACTATATCCTCTTTCTCCTTCACCCACCTCTCTCAACAACCACTAATCTCCTCAATCTCAGACCCCAATTTCTCCAAATCCCTGAAAATGGCCTCCATGTCCATCACAGCCTCCTTCCTCCCCTTCACCGCCACCCAACCCTCCGCCGCCGCCGCCGCCGCCCGAAGAGCCCTCTTCGTCCCCAAGGCCTCCACCTCTGCCGCTGCCACTGACAGCAACTCCAACGCCAACTTGGAGATCAAGAATGTGAAGGTGGAGAGCAGCCAAGGGCGGCGGGAGTTAGTGGCGGCCGCTGTGACTGTGGCAGCTGCGACCTTTGCGAAGGCGGCGATGGCGGATGAGCCCCCACGTGGCTCCGCGGAGGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCCCGTATATGCCGCAAATGATTTCCAGATGTTTTCTCTGTTGTCTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCCTTCTTCCCTCTCAAATCATTTCATTTGGTTTCTGGTTTCCGAGTTCTATTGTAAAATCTGTATAAGAAAGCTATGAATTGCCATGAATCCCCCTTCAGTGTTCTTGTTTCTGCAACTCCTTTCTTTCTTATCACACTTTTAAACAAATCAAAACTTTTATCCGATCATAAACAGTCAGACCAATATGAACATATCTCAACAAAACAATGATGAACATATCTCAACAAAACATGATAGTCAGACCAATATGAACATATCTCAACAAAACATGATATTCAAGACGTGGAAACCAACCCATCCTAATGTGGTCATTTCATTCTTCCTATGGTTGGCTGTTTAGTGGACAGACTTCAAAGCGGATCTAAGAACCCTAAACTCAATCCAGAAGCGTTTCAATATGAAAACCATGATTCGACGAAAATAAGGAACTTTATATCTCACTCTGTTCAAGAATATGAATTCAAAGAGACCATTAATGGAGGTTGGCAAGAAGATCCCAGAAAGTGCTGGAGCTTGATCCTGAGCCAATGGTGTTTGACTTGGAATAGACTTAAAATGATAATAATATTAATAATTATAGGGTCTTATATCATAAACGAATGGCAGAAAACCCAACATAAGTGTTTTTATATATATATACCAAATATTTGCATTCTTCAGATATCGGTTGAATCATTTCATCTTTCAGACGGTTTATCTATACACCTTAATTAGTAAGATTAAATGACCCTTCTCTGAACAACTTCAAGCTCAGGTTGTTGAATCTTTCCCGTGAATATTGCCTCGATGCTTTTCTCCAATCGGTTCCCGCCTTCATCATTCCTGCAAACTCCTCGTAGCTTATGCATCCGTCCTACAAAACCAGAATACGAAGGGTTAGAAGAACTGCCCAATAAGTTTCGGAGCTGAACTACTTTCGAGGAATATCGAGGAATGGAGCATTTCGAGGAATATCGAGTTTGTGTATGTTACTAAGAACTGGACATGAGGTACTGACCTTATCAGTGTCGACATCGTGCATAATGGCACTGATGACATCCTCACTGTTTGTTTCTTCATCGTTTAGCACAGCTCGAAGCTCTTCAATCTCGATGAAACCACTCTGATTTTGATCAAAGAATGCAAAAGCTTTATGTAGGTGCTCGTCATTTGCCATCCTTCTGAGGTGGATTGAAAGTGCAACAAACTCTCCGTAGTTGAGAGTTCCATCATCATGAACACCAGCCTGTAGAAAGAAAAAGTTGAGTCAGTAATTGTGTCTAAAAGTTTGATTACTACTTCACAAGATAGAATAGACTGCCCCTTTGAATCACAGAGACACCATGAATTCAAGCATCTAACCATTCCTGCTTCGTTTTTGTTTTTGTAACATCCCAAGCCCACCGCGAGTAGATATTGTCTTTTTTGGGCTTTCCTCTCAATGTTTTTAAAATACCTATGCTAGGGAGATGTTTCTACACCCTTATAAAAAATGCTTCGTTCTCCTCCCCAACCGATGTGGGATCTCACAATCCACCCCCTTAGAGGCCCAGAGTCCTTGCTAGCACTCATTCCCTTCTCCAATCGATGTGGGACCCCCCAAATCACCCCCTTCGGGAGCTAGCGTCCTCGCTGGCACTCATTCCCTTCTCCAATCGATGTGGGACCTCCCAATCCACCTCCCTTCAGGGCCCAGCGTCCACACTGGCACTCATTCCCTTCTCCAATTGATGTGGGACCCCCAATCCACTCCCTTCGGGACCAGCATCCTTGCTGGCACACCGCCTTGTGTCCAACCCCTTTGGGCCTCAGCCTCCTCGCTGGCACATCACCCGATGTCTGGTTCTGTTACCATTTGTATCAGCCTAAGCCCACCGCTAGCAGATATAGTCTCTTTAAAATGTGTCTTCTAGGGAGATGTTTTCACACCCTTATAAAGAATGTTTTGTTCTCCTCCCCAACNCTTTTTTTTTTGTAAAGAGAAGTTGTAATTATTGTTCTTGTAGAACAGCGGTAGAAACGCTTGGTTGTGAATCTAGCATGTAAAGAGAAGTTGTAATTGGGCAAAGAGATAAAGGGGAACACGTGGCAAGAGGGCATTGGTTAGAAAATGTGATAGGATAAGGAAATGGATGATGTTTGAATGAAGAATGAGCAGAAGGAGGGTTGAATCATCTGGACACACTCCCAAACATAAACTATATCCTCTTTCTCCTTCACCCACCTCTCTCAACAACCACTAATCTCCTCAATCTCAGACCCCAATTTCTCCAAATCCCTGAAAATGGCCTCCATGTCCATCACAGCCTCCTTCCTCCCCTTCACCGCCACCCAACCCTCCGCCGCCGCCGCCGCCGCCCGAAGAGCCCTCTTCGTCCCCAAGGCCTCCACCTCTGCCGCTGCCACTGACAGCAACTCCAACGCCAACTTGGAGATCAAGAATGTGAAGGTGGAGAGCAGCCAAGGGCGGCGGGAGTTAGTGGCGGCCGCTGTGACTGTGGCAGCTGCGACCTTTGCGAAGGCGGCGATGGCGGATGAGCCCCCACGTGGCTCCGCGGAGGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCCCGTATATGCCGCAAATGATTTCCAGATGTTTTCTCTGTTGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCCTTCTTCCCTCTCAAATCATTTCATTTGGTTTCTGGTTTCCGAGTTCTATTGTAAAATCTGTATAAGAAAGCTATGAATTGCCATGAATCCCCCTTCAGTGTTCTTGTTTCTGCAACTCCTTTCTTTCTTATCACACTTTTAAACAAATCAAAACTTTTATCCGATCATAAACAGTCAGACCAATATGAACATATCTCAACAAAACAATGATGAACATATCTCAACAAAACATGATAGTCAGACCAATATGAACATATCTCAACAAAACATGATATTCAAGACGTGGAAACCAACCCATCCTAATGTGGTCATTTCATTCTTCCTATGGTTGGCTGTTTAGTGGACAGACTTCAAAGCGGATCTAAGAACCCTAAACTCAATCCAGAAGCGTTTCAATATGAAAACCATGATTCGACGAAAATAAGGAACTTTATATCTCACTCTGTTCAAGAATATGAATTCAAAGAGACCATTAATGGAGGTTGGCAAGAAGATCCCAGAAAGTGCTGGAGCTTGATCCTGAGCCAATGGTGTTTGACTTGGAATAGACTTAAAATGATAATAATATTAATAATTATAGGGTCTTATATCATAAACGAATGGCAGAAAACCCAACATAAGTGTTTTTATATATATATACCAAATATTTGCATTCTTCAGATATCGGTTGAATCATTTCATCTTTCAGACGGTTTATCTATACACCTTAATTAGTAAGATTAAATGACCCTTCTCTGAACAACTTCAAGCTCAGGTTGTTGAATCTTTCCCGTGAATATTGCCTCGATGCTTTTCTCCAATCGGTTCCCGCCTTCATCATTCCTGCAAACTCCTCGTAGCTTATGCATCCGTCCTACAAAACCAGAATACGAAGGGTTAGAAGAACTGCCCAATAAGTTTCGGAGCTGAACTACTTTCGAGGAATATCGAGGAATGGAGCATTTCGAGGAATATCGAGTTTGTGTATGTTACTAAGAACTGGACATGAGGTACTGACCTTATCAGTGTCGACATCGTGCATAATGGCACTGATGACATCCTCACTGTTTGTTTCTTCATCGTTTAGCACAGCTCGAAGCTCTTCAATCTCGATGAAACCACTCTGATTTTGATCAAAGAATGCAAAAGCTTTATGTAGGTGCTCGTCATTTGCCATCCTTCTGAGGTGGATTGAAAGTGCAACAAACTCTCCGTAGTTGAGAGTTCCATCATCATGAACACCAGCCTGTAGAAAGAAAAAGTTGAGTCAGTAATTGTGTCTAAAAGTTTGATTACTACTTCACAAGATAGAATAGACTGCCCCTTTGAATCACAGAGACACCATGAATTCAAGCATCTAACCATTCCTGCTTCGTTTTTGTTTTTGTAACATCCCAAGCCCACCGCGAGTAGATATTGTCTTTTTTGGGCTTTCCTCTCAATGTTTTTAAAATACCTATGCTAGGGAGATGTTTCTACACCCTTATAAAAAATGCTTCGTTCTCCTCCCCAACCGATGTGGGATCTCACAATCCACCCCCTTAGAGGCCCAGAGTCCTTGCTAGCACTCATTCCCTTCTCCAATCGATGTGGGACCCCCCAAATCACCCCCTTCGGGAGCTAGCGTCCTCGCTGGCACTCATTCCCTTCTCCAATCGATGTGGGACCTCCCAATCCACCTCCCTTCAGGGCCCAGCGTCCACACTGGCACTCATTCCCTTCTCCAATTGATGTGGGACCCCCAATCCACTCCCTTCGGGACCAGCATCCTTGCTGGCACACCGCCTTGTGTCCAACCCCTTTGGGCCTCAGCCTCCTCGCTGGCACATCACCCGATGTCTGGTTCTGTTACCATTTGTATCAGCCTAAGCCCACCGCTAGCAGATATAGTCTCTTTAAAATGTGTCTTCTAGGGAGATGTTTTCACACCCTTATAAAGAATGTTTTGTTCTCCTCCCCAACTGATGTGGGATCTCATAGTTTTCTTTTTAGAGAACAACGGCCCCTATATCTACGTTTGTCGGGGGGAAAAAACAAAATCTAAACAAAACGCACACGTTCAAGGATACGAAAACAAAACAGAACAGAGAATTGTACATACTGCTTCCATAAGTATCTGAAGATCTGCTTCTGGAATCTGTTGTCCGAGCTTTTGCAATCCACTTCTCAGCTCCTCCAAATTTATCTTGCCCCTCTTCTCAACGTCCATCATTTCAAATGCATCCTTTATGCCGGCTACTTCCTCCACTGACAAATGCTCAGCGATCACCTAAGGACAATAATCAAATGAAATGTCATTTATAACCCAGGCAATCTATCCTATAAAACACCCCAAATGACGTTTATGATCACCCTTAGAGCTCGTTTCTTGAGCTTGTTCATCACAGAAAATTGCTTGAGTCTTGCTTTTACTGTCTCGCCTAATGGAACATTTGGAGCCTTCTTAGCATTTTGTAACCAAGGGTGGTCTGCACAAAGTGATATTTCAGGTATTCTGTGCAAATTCTAAACTACAAGTGTGAAAGCAGTGGACATGATACCTAGAACTTCCTGAGCGGTAAGGCGCCGTTTGGGATTGGGATCAAGCATTTTTCTTACAAGGTCCTTTGCATTTTCAGAGACTCTTGGCCAGGGGTCTCTCCTAAAATCAATAACCGAGCGAATAATTGCCTGTGCTACACCCTGTTCAGTTTCTACACGAANAAATCATTTCATTTGGTTTCTGGTTTCCGAGTTCTATTGTAAAATCTGTATAAGAAAGCTATGAATTGCCATGAATCCCCCTTCAGTGTTCTTGTTTCTGCAACTCCTTTCTTTCTTATCACACTTTTAAACAAATCAAAACTTTTATCCGATCATAAACAGTCAGACCAATATGAACATATCTCAACAAAACAATGATGAACATATCTCAACAAAACATGATAGTCAGACCAATATGAACATATCTCAACAAAACATGATATTCAAGACGTGGAAACCAACCCATCCTAATGTGGTCATTTCATTCTTCCTATGGTTGGCTGTTTAGTGGACAGACTTCAAAGCGGATCTAAGAACCCTAAACTCAATCCAGAAGCGTTTCAATATGAAAACCATGATTCGACGAAAATAAGGAACTTTATATCTCACTCTGTTCAAGAATATGAATTCAAAGAGACCATTAATGGAGGTTGGCAAGAAGATCCCAGAAAGTGCTGGAGCTTGATCCTGAGCCAATGGTGTTTGACTTGGAATAGACTTAAAATGATAATAATATTAATAATTATAGGGTCTTATATCATAAACGAATGGCAGAAAACCCAACATAAGTGTTTTTATATATATATACCAAATATTTGCATTCTTCAGATATCGGTTGAATCATTTCATCTTTCAGACGGTTTATCTATACACCTTAATTAGTAAGATTAAATGACCCTTCTCTGAACAACTTCAAGCTCAGGTTGTTGAATCTTTCCCGTGAATATTGCCTCGATGCTTTTCTCCAATCGGTTCCCGCCTTCATCATTCCTGCAAACTCCTCGTAGCTTATGCATCCGTCCTACAAAACCAGAATACGAAGGGTTAGAAGAACTGCCCAATAAGTTTCGGAGCTGAACTACTTTCGAGGAATATCGAGGAATGGAGCATTTCGAGGAATATCGAGTTTGTGTATGTTACTAAGAACTGGACATGAGGTACTGACCTTATCAGTGTCGACATCGTGCATAATGGCACTGATGACATCCTCACTGTTTGTTTCTTCATCGTTTAGCACAGCTCGAAGCTCTTCAATCTCGATGAAACCACTCTGATTTTGATCAAAGAATGCAAAAGCTTTATGTAGGTGCTCGTCATTTGCCATCCTTCTGAGGTGGATTGAAAGTGCAACAAACTCTCCGTAGTTGAGAGTTCCATCATCATGAACACCAGCCTGTAGAAAGAAAAAGTTGAGTCAGTAATTGTGTCTAAAAGTTTGATTACTACTTCACAAGATAGAATAGACTGCCCCTTTGAATCACAGAGACACCATGAATTCAAGCATCTAACCATTCCTGCTTCGTTTTTGTTTTTGTAACATCCCAAGCCCACCGCGAGTAGATATTGTCTTTTTTGGGCTTTCCTCTCAATGTTTTTAAAATACCTATGCTAGGGAGATGTTTCTACACCCTTATAAAAAATGCTTCGTTCTCCTCCCCAACCGATGTGGGATCTCACAATCCACCCCCTTAGAGGCCCAGAGTCCTTGCTAGCACTCATTCCCTTCTCCAATCGATGTGGGACCCCCCAAATCACCCCCTTCGGGAGCTAGCGTCCTCGCTGGCACTCATTCCCTTCTCCAATCGATGTGGGACCTCCCAATCCACCTCCCTTCAGGGCCCAGCGTCCACACTGGCACTCATTCCCTTCTCCAATTGATGTGGGACCCCCAATCCACTCCCTTCGGGACCAGCATCCTTGCTGGCACACCGCCTTGTGTCCAACCCCTTTGGGCCTCAGCCTCCTCGCTGGCACATCACCCGATGTCTGGTTCTGTTACCATTTGTATCAGCCTAAGCCCACCGCTAGCAGATATAGTCTCTTTAAAATGTGTCTTCTAGGGAGATGTTTTCACACCCTTATAAAGAATGTTTTGTTCTCCTCCCCAACTGATGTGGGATCTCATAGTTTTCTTTTTAGAGAACAACGGCCCCTATATCTACGTTTGTCGGGGGGAAAAAACAAAATCTAAACAAAACGCACACGTTCAAGGATACGAAAACAAAACAGAACAGAGAATTGTACATACTGCTTCCATAAGTATCTGAAGATCTGCTTCTGGAATCTGTTGTCCGAGCTTTTGCAATCCACTTCTCAGCTCCTCCAAATTTATCTTGCCCCTCTTCTCAACGTCCATCATTTCAAATGCATCCTTTATGCCGGCTACTTCCTCCACTGACAAATGCTCAGCGATCACCTAAGGACAATAATCAAATGAAATGTCATTTATAACCCAGGCAATCTATCCTATAAAACACCCCAAATGACGTTTATGATCACCCTTAGAGCTCGTTTCTTGAGCTTGTTCATCACAGAAAATTGCTTGAGTCTTGCTTTTACTGTCTCGCCTAATGGAACATTTGGAGCCTTCTTAGCATTTTGTAACCAAGGGTGGTCTGCACAAAGTGATATTTCAGGTATTCTGTGCAAATTCTAAACTACAAGTGTGAAAGCAGTGGACATGATACCTAGAACTTCCTGAGCGGTAAGGCGCCGTTTGGGATTGGGATCAAGCATTTTTCTTACAAGGTCCTTTGCATTTTCAGAGACTCTTGGCCAGGGGTCTCTCCTAAAATCAATAACCGAGCGAATAATTGCCTGTGCTACACCCTGTTCAGTTTCTACACGAAAATCGAAAGCTTATGAGGAGGAAATCTAAAAGAAGAACTACAAAAACTACACTAACAGGCGACTTATGTGAAAGATTCTATCCACAAGCAATGAGAACTTATTTCTTAACCAAACGGTGTATTATATGCATTCATTGTTCTTACAACATATGAACTGTGTAGAGCACAAAAATTCAAACCTGCCCAAAATGGTGGAATGCCACAGAGTAAAATATAGAGGATAACCCCGGCGCTCCAAACATCGACTTCTGGACCATAGTTCTTTTTCAGGACCTCTGGGGCCATGTAATAAGGACTGCCTACTATTTCATTGAATTGTTCACCTAATCCAATAGAAACAGTAATGTATAGTACGTTTCATGACATGTACAAATAGAAAGGTGCGGCAAGTGTAACAAAACAAGAATGCACAACAAAATGATAACATGATTCTCGTATGTCAACTGACTACAAGCTGCAATACCTCGTTTAAAAGTGATAGACAGTCCAAAATCGATTGCCTTCAATGGGGATGATTCCTTCTTATTTGCAAAAAGAAAATTTTCTGGTTTGAGATCACGATGCATCACTCCATGTTTATGACAAGCCTGTAACATGAAATACATGTAAATAAACAAGATTACTTCTCAAGAATAAAAATCTCGAAGTCATATGAAAAATACAATTGTGAGATCCAAGATTGGTTGGGAAGGAGAGTGAAGCTTTTTTTATAAGGGTGTGGAAACCTCTCCCTAAGAGACACGTTTTGAANAAAACTTTTATCCGATCATAAACAGTCAGACCAATATGAACATATCTCAACAAAACAATGATGAACATATCTCAACAAAACATGATAGTCAGACCAATATGAACATATCTCAACAAAACATGATATTCAAGACGTGGAAACCAACCCATCCTAATGTGGTCATTTCATTCTTCCTATGGTTGGCTGTTTAGTGGACAGACTTCAAAGCGGATCTAAGAACCCTAAACTCAATCCAGAAGCGTTTCAATATGAAAACCATGATTCGACGAAAATAAGGAACTTTATATCTCACTCTGTTCAAGAATATGAATTCAAAGAGACCATTAATGGAGGTTGGCAAGAAGATCCCAGAAAGTGCTGGAGCTTGATCCTGAGCCAATGGTGTTTGACTTGGAATAGACTTAAAATGATAATAATATTAATAATTATAGGGTCTTATATCATAAACGAATGGCAGAAAACCCAACATAAGTGTTTTTATATATATATACCAAATATTTGCATTCTTCAGATATCGGTTGAATCATTTCATCTTTCAGACGGTTTATCTATACACCTTAATTAGTAAGATTAAATGACCCTTCTCTGAACAACTTCAAGCTCAGGTTGTTGAATCTTTCCCGTGAATATTGCCTCGATGCTTTTCTCCAATCGGTTCCCGCCTTCATCATTCCTGCAAACTCCTCGTAGCTTATGCATCCGTCCTACAAAACCAGAATACGAAGGGTTAGAAGAACTGCCCAATAAGTTTCGGAGCTGAACTACTTTCGAGGAATATCGAGGAATGGAGCATTTCGAGGAATATCGAGTTTGTGTATGTTACTAAGAACTGGACATGAGGTACTGACCTTATCAGTGTCGACATCGTGCATAATGGCACTGATGACATCCTCACTGTTTGTTTCTTCATCGTTTAGCACAGCTCGAAGCTCTTCAATCTCGATGAAACCACTCTGATTTTGATCAAAGAATGCAAAAGCTTTATGTAGGTGCTCGTCATTTGCCATCCTTCTGAGGTGGATTGAAAGTGCAACAAACTCTCCGTAGTTGAGAGTTCCATCATCATGAACACCAGCCTGTAGAAAGAAAAAGTTGAGTCAGTAATTGTGTCTAAAAGTTTGATTACTACTTCACAAGATAGAATAGACTGCCCCTTTGAATCACAGAGACACCATGAATTCAAGCATCTAACCATTCCTGCTTCGTTTTTGTTTTTGTAACATCCCAAGCCCACCGCGAGTAGATATTGTCTTTTTTGGGCTTTCCTCTCAATGTTTTTAAAATACCTATGCTAGGGAGATGTTTCTACACCCTTATAAAAAATGCTTCGTTCTCCTCCCCAACCGATGTGGGATCTCACAATCCACCCCCTTAGAGGCCCAGAGTCCTTGCTAGCACTCATTCCCTTCTCCAATCGATGTGGGACCCCCCAAATCACCCCCTTCGGGAGCTAGCGTCCTCGCTGGCACTCATTCCCTTCTCCAATCGATGTGGGACCTCCCAATCCACCTCCCTTCAGGGCCCAGCGTCCACACTGGCACTCATTCCCTTCTCCAATTGATGTGGGACCCCCAATCCACTCCCTTCGGGACCAGCATCCTTGCTGGCACACCGCCTTGTGTCCAACCCCTTTGGGCCTCAGCCTCCTCGCTGGCACATCACCCGATGTCTGGTTCTGTTACCATTTGTATCAGCCTAAGCCCACCGCTAGCAGATATAGTCTCTTTAAAATGTGTCTTCTAGGGAGATGTTTTCACACCCTTATAAAGAATGTTTTGTTCTCCTCCCCAACTGATGTGGGATCTCATAGTTTTCTTTTTAGAGAACAACGGCCCCTATATCTACGTTTGTCGGGGGGAAAAAACAAAATCTAAACAAAACGCACACGTTCAAGGATACGAAAACAAAACAGAACAGAGAATTGTACATACTGCTTCCATAAGTATCTGAAGATCTGCTTCTGGAATCTGTTGTCCGAGCTTTTGCAATCCACTTCTCAGCTCCTCCAAATTTATCTTGCCCCTCTTCTCAACGTCCATCATTTCAAATGCATCCTTTATGCCGGCTACTTCCTCCACTGACAAATGCTCAGCGATCACCTAAGGACAATAATCAAATGAAATGTCATTTATAACCCAGGCAATCTATCCTATAAAACACCCCAAATGACGTTTATGATCACCCTTAGAGCTCGTTTCTTGAGCTTGTTCATCACAGAAAATTGCTTGAGTCTTGCTTTTACTGTCTCGCCTAATGGAACATTTGGAGCCTTCTTAGCATTTTGTAACCAAGGGTGGTCTGCACAAAGTGATATTTCAGGTATTCTGTGCAAATTCTAAACTACAAGTGTGAAAGCAGTGGACATGATACCTAGAACTTCCTGAGCGGTAAGGCGCCGTTTGGGATTGGGATCAAGCATTTTTCTTACAAGGTCCTTTGCATTTTCAGAGACTCTTGGCCAGGGGTCTCTCCTAAAATCAATAACCGAGCGAATAATTGCCTGTGCTACACCCTGTTCAGTTTCTACACGAAAATCGAAAGCTTATGAGGAGGAAATCTAAAAGAAGAACTACAAAAACTACACTAACAGGCGACTTATGTGAAAGATTCTATCCACAAGCAATGAGAACTTATTTCTTAACCAAACGGTGTATTATATGCATTCATTGTTCTTACAACATATGAACTGTGTAGAGCACAAAAATTCAAACCTGCCCAAAATGGTGGAATGCCACAGAGTAAAATATAGAGGATAACCCCGGCGCTCCAAACATCGACTTCTGGACCATAGTTCTTTTTCAGGACCTCTGGGGCCATGTAATAAGGACTGCCTACTATTTCATTGAATTGTTCACCTAATCCAATAGAAACAGTAATGTATAGTACGTTTCATGACATGTACAAATAGAAAGGTGCGGCAAGTGTAACAAAACAAGAATGCACAACAAAATGATAACATGATTCTCGTATGTCAACTGACTACAAGCTGCAATACCTCGTTTAAAAGTGATAGACAGTCCAAAATCGATTGCCTTCAATGGGGATGATTCCTTCTTATTTGCAAAAAGAAAATTTTCTGGTTTGAGATCACGATGCATCACTCCATGTTTATGACAAGCCTGTAACATGAAATACATGTAAATAAACAAGATTACTTCTCAAGAATAAAAATCTCGAAGTCATATGAAAAATACAATTGTGAGATCCAAGATTGGTTGGGAAGGAGAGTGAAGCTTTTTTTATAAGGGTGTGGAAACCTCTCCCTAAGAGACACGTTTTGAAAACTTTGAGGGGAAGCTCGAAAGGGAAAGCCCAAAGAGGACAATATCGGTTAGTGGTGGGCTTGAGCTGTTACAAATGGTATCAAAGCCAGACACAGGGCGTTGTGCTAGCAAGGACGCTGGGTCCTGAAGGGGAGTGGATTGAGAGGTCCTACATTGATTGAAGAAGGTAACGAGTGCTAGCGAGAACACTGGGTCCCGAAGGATGAGGGAGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAACNCCTTCTGAGGTGGATTGAAAGTGCAACAAACTCTCCGTAGTTGAGAGTTCCATCATCATGAACACCAGCCTGTAGAAAGAAAAAGTTGAGTCAGTAATTGTGTCTAAAAGTTTGATTACTACTTCACAAGATAGAATAGACTGCCCCTTTGAATCACAGAGACACCATGAATTCAAGCATCTAACCATTCCTGCTTCGTTTTTGTTTTTGTAACATCCCAAGCCCACCGCGAGTAGATATTGTCTTTTTTGGGCTTTCCTCTCAATGTTTTTAAAATACCTATGCTAGGGAGATGTTTCTACACCCTTATAAAAAATGCTTCGTTCTCCTCCCCAACCGATGTGGGATCTCACAATCCACCCCCTTAGAGGCCCAGAGTCCTTGCTAGCACTCATTCCCTTCTCCAATCGATGTGGGACCCCCCAAATCACCCCCTTCGGGAGCTAGCGTCCTCGCTGGCACTCATTCCCTTCTCCAATCGATGTGGGACCTCCCAATCCACCTCCCTTCAGGGCCCAGCGTCCACACTGGCACTCATTCCCTTCTCCAATTGATGTGGGACCCCCAATCCACTCCCTTCGGGACCAGCATCCTTGCTGGCACACCGCCTTGTGTCCAACCCCTTTGGGCCTCAGCCTCCTCGCTGGCACATCACCCGATGTCTGGTTCTGTTACCATTTGTATCAGCCTAAGCCCACCGCTAGCAGATATAGTCTCTTTAAAATGTGTCTTCTAGGGAGATGTTTTCACACCCTTATAAAGAATGTTTTGTTCTCCTCCCCAACTGATGTGGGATCTCATAGTTTTCTTTTTAGAGAACAACGGCCCCTATATCTACGTTTGTCGGGGGGAAAAAACAAAATCTAAACAAAACGCACACGTTCAAGGATACGAAAACAAAACAGAACAGAGAATTGTACATACTGCTTCCATAAGTATCTGAAGATCTGCTTCTGGAATCTGTTGTCCGAGCTTTTGCAATCCACTTCTCAGCTCCTCCAAATTTATCTTGCCCCTCTTCTCAACGTCCATCATTTCAAATGCATCCTTTATGCCGGCTACTTCCTCCACTGACAAATGCTCAGCGATCACCTAAGGACAATAATCAAATGAAATGTCATTTATAACCCAGGCAATCTATCCTATAAAACACCCCAAATGACGTTTATGATCACCCTTAGAGCTCGTTTCTTGAGCTTGTTCATCACAGAAAATTGCTTGAGTCTTGCTTTTACTGTCTCGCCTAATGGAACATTTGGAGCCTTCTTAGCATTTTGTAACCAAGGGTGGTCTGCACAAAGTGATATTTCAGGTATTCTGTGCAAATTCTAAACTACAAGTGTGAAAGCAGTGGACATGATACCTAGAACTTCCTGAGCGGTAAGGCGCCGTTTGGGATTGGGATCAAGCATTTTTCTTACAAGGTCCTTTGCATTTTCAGAGACTCTTGGCCAGGGGTCTCTCCTAAAATCAATAACCGAGCGAATAATTGCCTGTGCTACACCCTGTTCAGTTTCTACACGAAAATCGAAAGCTTATGAGGAGGAAATCTAA

mRNA sequence

ATGGGAGAAGTTAACAGCGACCCCAATTTCTCCAAATCCCTGAAAATGGCCTCCATGTCCATCACAGCCTCCTTCCTCCCCTTCACCGCCACCCAACCCTCCGCCGCCGCCGCCGCCGCCCGAAGAGCCCTCTTCGTCCCCAAGGCCTCCACCTCTGCCGCTGCCACTGACAGCAACTCCAACGCCAACTTGGAGATCAAGAATGTGAAGGTGGAGAGCAGCCAAGGGCGGCGGGAGTTAGTGGCGGCCGCTGTGACTGTGGCAGCTGCGACCTTTGCGAAGGCGGCGATGGCGGATGAGCCCCCACGTGGCTCCGCGGAGGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCCCACCCCAATTTCTCCAAATCCCTGAAAATGGCCTCCATGTCCATCACAGCCTCCTTCCTCCCCTTCACCGCCACCCAACCCTCCGCCGCCGCCGCCGCCGCCCGAAGAGCCCTCTTCGTCCCCAAGGCCTCCACCTCTGCCGCTGCCACTGACAGCAACTCCAACGCCAACTTGGAGATCAAGAATGTGAAGGTGGAGAGCAGCCAAGGGCGGCGGGAGTTAGTGGCGGCCGCTGTGACTGTGGCAGCTGCGACCTTTGCGAAGGCGGCGATGGCGGATGAGCCCCCACGTGGCTCCGCGGAGGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCCCAGACTCTTGGCCAGGGGTCTCTCCTAAAATCAATAACCGAGCGAATAATTGCCTGTGCTACACCCTGTTCAGTTTCTACACGAAAATCGAAAGCTTATGAGGAGGAAATCTAA

Coding sequence (CDS)

ATGGGAGAAGTTAACAGCGACCCCAATTTCTCCAAATCCCTGAAAATGGCCTCCATGTCCATCACAGCCTCCTTCCTCCCCTTCACCGCCACCCAACCCTCCGCCGCCGCCGCCGCCGCCCGAAGAGCCCTCTTCGTCCCCAAGGCCTCCACCTCTGCCGCTGCCACTGACAGCAACTCCAACGCCAACTTGGAGATCAAGAATGTGAAGGTGGAGAGCAGCCAAGGGCGGCGGGAGTTAGTGGCGGCCGCTGTGACTGTGGCAGCTGCGACCTTTGCGAAGGCGGCGATGGCGGATGAGCCCCCACGTGGCTCCGCGGAGGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCCCACCCCAATTTCTCCAAATCCCTGAAAATGGCCTCCATGTCCATCACAGCCTCCTTCCTCCCCTTCACCGCCACCCAACCCTCCGCCGCCGCCGCCGCCGCCCGAAGAGCCCTCTTCGTCCCCAAGGCCTCCACCTCTGCCGCTGCCACTGACAGCAACTCCAACGCCAACTTGGAGATCAAGAATGTGAAGGTGGAGAGCAGCCAAGGGCGGCGGGAGTTAGTGGCGGCCGCTGTGACTGTGGCAGCTGCGACCTTTGCGAAGGCGGCGATGGCGGATGAGCCCCCACGTGGCTCCGCGGAGGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCCCAGACTCTTGGCCAGGGGTCTCTCCTAAAATCAATAACCGAGCGAATAATTGCCTGTGCTACACCCTGTTCAGTTTCTACACGAAAATCGAAAGCTTATGAGGAGGAAATCTAA

Protein sequence

MGEVNSDPNFSKSLKMASMSITASFLPFTATQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTAHPNFSKSLKMASMSITASFLPFTATQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTAQTLGQGSLLKSITERIIACATPCSVSTRKSKAYEEEI
Homology
[Close]
BLAST of Cp4.1LG16g08670 vs. ExPASy Swiss-Prot
Match: Q39195 (Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBT PE=3 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-08
Identity = 49/110 (44.55%), Postives = 67/110 (60.91%), Query Frame = 0 

Query: 132 MASMSITASFLPFTATQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESSQ 191
           MASM++TA+F P  A  PSA      R L V +AST      S++  +LE+K  +  S+ 
Sbjct: 1   MASMTMTATFFPAVAKVPSATGG---RRLSVVRAST------SDNTPSLEVK--EQSSTT 60

Query: 192 GRRELVAAAVTVAAATFAKAAMA--DEPPRGSAEAKQKYAPICVTMPTAQ 240
            RR+L+  A   A  + AK AMA  +EP RG+  AK+KYA +CVTMPTA+
Sbjct: 61  MRRDLMFTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAK 99

[Close]
BLAST of Cp4.1LG16g08670 vs. ExPASy Swiss-Prot
Match: B3EWI4 (Photosystem II 5 kDa protein, chloroplastic OS=Petunia hybrida OX=4102 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-06
Identity = 43/109 (39.45%), Postives = 61/109 (55.96%), Query Frame = 0 

Query: 132 MASMSITASFLPFTATQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESSQ 191
           MAS+++ +SFL  +   P+   +A RR + + KA             N+ I   +   + 
Sbjct: 1   MASITMMSSFLGGSTVAPAKVPSANRRGVVMVKAM-------HEGENNVVISKNEESKNS 60

Query: 192 GRRELVAAAVTVAAATFAKAAMAD-EPPRGSAEAKQKYAPICVTMPTAQ 240
           GRREL  A    AA + AK AMAD EP RG+ EAK+KY+ +CVT PTA+
Sbjct: 61  GRRELFFAMAAAAACSVAKTAMADEEPKRGTPEAKKKYSSVCVTNPTAR 102

[Close]
BLAST of Cp4.1LG16g08670 vs. ExPASy Swiss-Prot
Match: P31336 (Photosystem II 5 kDa protein, chloroplastic OS=Gossypium hirsutum OX=3635 GN=PSBT PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.3e-05
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = 0 

Query: 132 MASMSITASFLPFTATQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESSQ 191
           MAS+++T SFL  T      +    +R L V  A+  A       +        K E + 
Sbjct: 1   MASITMTTSFLS-TTNLTKGSPRITQRRLVVANAAKGAQVESVQMSGER-----KTEGNN 60

Query: 192 GRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTAQ 240
           GRRE++ AA   A  + A  A A EP RGSAEAK+ YAP+CVTMPTA+
Sbjct: 61  GRREMMFAAAAAAICSVAGVATA-EPKRGSAEAKKAYAPVCVTMPTAR 101

[Close]
BLAST of Cp4.1LG16g08670 vs. NCBI nr
Match: XP_023512156.1 (photosystem II 5 kDa protein, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023512157.1 photosystem II 5 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 187 bits (476), Expect = 1.04e-56
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 132 MASMSITASFLPFTATQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESSQ 191
           MASMSITASFLPFTATQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESSQ
Sbjct: 1   MASMSITASFLPFTATQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESSQ 60

Query: 192 GRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTAQ 239
           GRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTA+
Sbjct: 61  GRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTAR 108

[Close]
BLAST of Cp4.1LG16g08670 vs. NCBI nr
Match: KAG6570402.1 (Photosystem II 5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010275.1 Photosystem II 5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 184 bits (468), Expect = 1.69e-55
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0 

Query: 132 MASMSITASFLPFTATQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESSQ 191
           MASMSITASFLPFTATQPSAAAAAARRALFV KASTSAAATDSNSNANLEIKNVKVESSQ
Sbjct: 1   MASMSITASFLPFTATQPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQ 60

Query: 192 GRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTAQ 239
           GRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTA+
Sbjct: 61  GRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTAR 108

[Close]
BLAST of Cp4.1LG16g08670 vs. NCBI nr
Match: XP_022944588.1 (photosystem II 5 kDa protein, chloroplastic [Cucurbita moschata] >XP_022986667.1 photosystem II 5 kDa protein, chloroplastic [Cucurbita maxima])

HSP 1 Score: 177 bits (449), Expect = 1.19e-52
Identity = 104/108 (96.30%), Postives = 105/108 (97.22%), Query Frame = 0 

Query: 132 MASMSITASFLPFTATQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESSQ 191
           MASMSITASFLPFTATQPSAAAA  RRALFV KASTSAAATDSNSNANLEIKNVKVESSQ
Sbjct: 1   MASMSITASFLPFTATQPSAAAA--RRALFVTKASTSAAATDSNSNANLEIKNVKVESSQ 60

Query: 192 GRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTAQ 239
           GRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTA+
Sbjct: 61  GRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTAR 106

[Close]
BLAST of Cp4.1LG16g08670 vs. NCBI nr
Match: XP_008449703.1 (PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis melo] >KAA0041421.1 photosystem II 5 kDa protein [Cucumis melo var. makuwa] >TYJ96132.1 photosystem II 5 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 141 bits (355), Expect = 7.50e-38
Identity = 90/118 (76.27%), Postives = 95/118 (80.51%), Query Frame = 0 

Query: 6   SDPNFSKSLKMASMSITASFLPFTAT-QPSAAAAAARRALFVPKASTSAAATDSNSNANL 65
           S+PNFS  L MASM++TASFLP TAT QPSA     RRAL V KASTS    +  SN NL
Sbjct: 43  SNPNFSNFLNMASMAMTASFLPTTATKQPSATP---RRALIVAKASTS----NETSNVNL 102

Query: 66  EIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTA 122
           E+KNVKVES QGRRELVAAAVTVAAAT AKAAMADEP RGS EAKQKYAPICVTMPTA
Sbjct: 103 EVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTA 153

[Close]
BLAST of Cp4.1LG16g08670 vs. NCBI nr
Match: XP_038901593.1 (photosystem II 5 kDa protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 134 bits (336), Expect = 1.09e-35
Identity = 86/109 (78.90%), Postives = 91/109 (83.49%), Query Frame = 0 

Query: 132 MASMSITASFLPFTAT-QPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESS 191
           MASM++TASFLP TA  QPS AA   RRAL V KASTS+ A    SN NLEIKNVKVE+ 
Sbjct: 1   MASMAMTASFLPATANKQPSTAA---RRALVVAKASTSSDA----SNVNLEIKNVKVENR 60

Query: 192 QGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTAQ 239
           QGRRELVAAAVTVAAAT AKAAMADEPPRGS EAKQKYAPICVTMPTA+
Sbjct: 61  QGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPTAR 102

[Close]
BLAST of Cp4.1LG16g08670 vs. ExPASy TrEMBL
Match: A0A6J1J874 (photosystem II 5 kDa protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111484352 PE=4 SV=1)

HSP 1 Score: 177 bits (449), Expect = 5.74e-53
Identity = 104/108 (96.30%), Postives = 105/108 (97.22%), Query Frame = 0 

Query: 132 MASMSITASFLPFTATQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESSQ 191
           MASMSITASFLPFTATQPSAAAA  RRALFV KASTSAAATDSNSNANLEIKNVKVESSQ
Sbjct: 1   MASMSITASFLPFTATQPSAAAA--RRALFVTKASTSAAATDSNSNANLEIKNVKVESSQ 60

Query: 192 GRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTAQ 239
           GRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTA+
Sbjct: 61  GRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTAR 106

[Close]
BLAST of Cp4.1LG16g08670 vs. ExPASy TrEMBL
Match: A0A6J1FY72 (photosystem II 5 kDa protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111449001 PE=4 SV=1)

HSP 1 Score: 177 bits (449), Expect = 5.74e-53
Identity = 104/108 (96.30%), Postives = 105/108 (97.22%), Query Frame = 0 

Query: 132 MASMSITASFLPFTATQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESSQ 191
           MASMSITASFLPFTATQPSAAAA  RRALFV KASTSAAATDSNSNANLEIKNVKVESSQ
Sbjct: 1   MASMSITASFLPFTATQPSAAAA--RRALFVTKASTSAAATDSNSNANLEIKNVKVESSQ 60

Query: 192 GRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTAQ 239
           GRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTA+
Sbjct: 61  GRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTAR 106

[Close]
BLAST of Cp4.1LG16g08670 vs. ExPASy TrEMBL
Match: A0A5A7TID9 (Photosystem II 5 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00980 PE=4 SV=1)

HSP 1 Score: 141 bits (355), Expect = 3.63e-38
Identity = 90/118 (76.27%), Postives = 95/118 (80.51%), Query Frame = 0 

Query: 6   SDPNFSKSLKMASMSITASFLPFTAT-QPSAAAAAARRALFVPKASTSAAATDSNSNANL 65
           S+PNFS  L MASM++TASFLP TAT QPSA     RRAL V KASTS    +  SN NL
Sbjct: 43  SNPNFSNFLNMASMAMTASFLPTTATKQPSATP---RRALIVAKASTS----NETSNVNL 102

Query: 66  EIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTA 122
           E+KNVKVES QGRRELVAAAVTVAAAT AKAAMADEP RGS EAKQKYAPICVTMPTA
Sbjct: 103 EVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTA 153

[Close]
BLAST of Cp4.1LG16g08670 vs. ExPASy TrEMBL
Match: A0A1S3BML8 (photosystem II 5 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491503 PE=4 SV=1)

HSP 1 Score: 141 bits (355), Expect = 3.63e-38
Identity = 90/118 (76.27%), Postives = 95/118 (80.51%), Query Frame = 0 

Query: 6   SDPNFSKSLKMASMSITASFLPFTAT-QPSAAAAAARRALFVPKASTSAAATDSNSNANL 65
           S+PNFS  L MASM++TASFLP TAT QPSA     RRAL V KASTS    +  SN NL
Sbjct: 43  SNPNFSNFLNMASMAMTASFLPTTATKQPSATP---RRALIVAKASTS----NETSNVNL 102

Query: 66  EIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTA 122
           E+KNVKVES QGRRELVAAAVTVAAAT AKAAMADEP RGS EAKQKYAPICVTMPTA
Sbjct: 103 EVKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTA 153

[Close]
BLAST of Cp4.1LG16g08670 vs. ExPASy TrEMBL
Match: A0A0A0KIB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G439930 PE=4 SV=1)

HSP 1 Score: 129 bits (324), Expect = 3.31e-34
Identity = 83/109 (76.15%), Postives = 89/109 (81.65%), Query Frame = 0 

Query: 132 MASMSITASFLPFTAT-QPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESS 191
           MASM++TASFLP TAT QPS+ A   RR L V KASTS  A    SN N+E+KNVKVES 
Sbjct: 1   MASMAMTASFLPTTATKQPSSTA---RRPLIVAKASTSNQA----SNVNMEVKNVKVESR 60

Query: 192 QGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTAQ 239
           QGRRELVAAAVTVAAAT AKAAMADEP RGS EAKQKYAPICVTMPTA+
Sbjct: 61  QGRRELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTAR 102

[Close]
BLAST of Cp4.1LG16g08670 vs. TAIR 10
Match: AT1G51400.1 (Photosystem II 5 kD protein )

HSP 1 Score: 69.3 bits (168), Expect = 5.4e-12
Identity = 52/110 (47.27%), Postives = 70/110 (63.64%), Query Frame = 0 

Query: 132 MASMSITASFLPFTATQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESS- 191
           MASM++T+SFLP  +  P+  ++ +RR+L V KAS S   T         ++N K E S 
Sbjct: 1   MASMTMTSSFLPTVSNLPANISSNSRRSLTVVKASGSENTT--------SLENKKQEQSM 60

Query: 192 QGRRELVAAAVTVAAATFAKAAMA-DEPPRGSAEAKQKYAPICVTMPTAQ 240
           + RR+LV  A   A  + AK AMA DEP RG+  AK+KYAP+CVTMPTA+
Sbjct: 61  KMRRDLVFTAAAAAVCSLAKVAMADDEPKRGTEAAKKKYAPVCVTMPTAK 102

[Close]
BLAST of Cp4.1LG16g08670 vs. TAIR 10
Match: AT3G21055.1 (photosystem II subunit T )

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-09
Identity = 49/110 (44.55%), Postives = 67/110 (60.91%), Query Frame = 0 

Query: 132 MASMSITASFLPFTATQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESSQ 191
           MASM++TA+F P  A  PSA      R L V +AST      S++  +LE+K  +  S+ 
Sbjct: 1   MASMTMTATFFPAVAKVPSATGG---RRLSVVRAST------SDNTPSLEVK--EQSSTT 60

Query: 192 GRRELVAAAVTVAAATFAKAAMA--DEPPRGSAEAKQKYAPICVTMPTAQ 240
            RR+L+  A   A  + AK AMA  +EP RG+  AK+KYA +CVTMPTA+
Sbjct: 61  MRRDLMFTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAK 99

The following BLAST results are available for this feature:
BLAST of Cp4.1LG16g08670 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q391951.6e-0844.55Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=P... [more]
B3EWI41.1e-0639.45Photosystem II 5 kDa protein, chloroplastic OS=Petunia hybrida OX=4102 PE=1 SV=1[more]
P313361.3e-0540.74Photosystem II 5 kDa protein, chloroplastic OS=Gossypium hirsutum OX=3635 GN=PSB... [more]
BLAST of Cp4.1LG16g08670 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023512156.11.04e-5699.07photosystem II 5 kDa protein, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023... [more]
KAG6570402.11.69e-5598.15Photosystem II 5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma sub... [more]
XP_022944588.11.19e-5296.30photosystem II 5 kDa protein, chloroplastic [Cucurbita moschata] >XP_022986667.1... [more]
XP_008449703.17.50e-3876.27PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis melo] >KAA004142... [more]
XP_038901593.11.09e-3578.90photosystem II 5 kDa protein, chloroplastic [Benincasa hispida][more]
BLAST of Cp4.1LG16g08670 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1J8745.74e-5396.30photosystem II 5 kDa protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1FY725.74e-5396.30photosystem II 5 kDa protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A5A7TID93.63e-3876.27Photosystem II 5 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A1S3BML83.63e-3876.27photosystem II 5 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491... [more]
A0A0A0KIB23.31e-3476.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G439930 PE=4 SV=1[more]
BLAST of Cp4.1LG16g08670 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G51400.15.4e-1247.27Photosystem II 5 kD protein [more]
AT3G21055.11.1e-0944.55photosystem II subunit T [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34940:SF4PHOTOSYSTEM II 5 KDA PROTEIN, CHLOROPLASTICcoord: 16..123
coord: 132..239
IPR040296Photosystem II 5kDa protein, chloroplasticPANTHERPTHR34940PHOTOSYSTEM II 5 KDA PROTEIN, CHLOROPLASTICcoord: 16..123
coord: 132..239

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g08670.1Cp4.1LG16g08670.1mRNA