Cp4.1LG16g04160 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG16g04160
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionEukaryotic translation initiation factor 4C
LocationCp4.1LG16: 5528162 .. 5529502 (-)
RNA-Seq ExpressionCp4.1LG16g04160
SyntenyCp4.1LG16g04160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTGTGGCTGTTTAATTTTTGTATTGAATTTGCTGGATGTGTTAAGTTGTTACGATGACTGTTTCCGAGGGGATTATATGATAAGCTGATGCGTTATGTGTACTCCTTTCTAATGCGATTGAAAAGGATTCGTGCTTTCTATTAGATAGAGATCGTTGATTTTAGTTTCTAGGTTTTCTATTTTGTTTATCGATGAACTCGTTTACGATTCCAGTTGCGTCGTTTTTACTCGCTCTGATTCTAGGAAGGATAATGATTTTGTGGTTCAATTCTTTTAGCTATTGAATGGTTTTATACTACGTTCTTCGTTTTTTTTTTCATCATATCTTTGGTTCACTTGTGGTGGGCGCTTGAGGGTTGACTTCAATTTTTTTTATTAGGGCTTATGGGAACAAGTGGCCAATATTAACATTTATAATTGCTGCTGCAACTGTCAAGTGATCATTGTTTGTATTTTTCATGCTCTGTATAACTAGCAGCAAGATGAATGCGTGAGATTATTATTTGTATAACTTGATTATATTTAGTGCGCAAGGTTTGAATTGTGCGAGGATCTTTTATGTTATTGGTATCACAATTGCTGATATTTGCACTTCTATGTATGACGGTTAGAAACAGCAAACATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGCGAGCTTGTGTTCAAGGAAGATGGTCAGGAGTATGCACAAGTTCTCAGAATGTTGGGGAACGGTCGGTGTGAGGCAATGTGCATCGACGGGTCGAAGCGTCTTTGCCATATCCGAGGGAAGATGCACAAGAAGGTCTGGATTGCAGCTGGTGATATAATACTCGTTGGTCTTCGCGACTATCAGGATGATAAAGCTGATGTTATCCTCAAGTACATGCCTGATGAAGCAAGGCTGTTGAAGGCATATGGAGAGCTTCCTGAGAACACCCGCCTCAACGAGGGTATCGCTGGCGGAATCGACGACGAGGATGATGGTGGGGTTGATGATTATCTGGAGTTTGAGGATGAAGATATTGATAAGATTTAGGGTTCGAGTGATTATTATTGATGTTTGGTAACCCCCATGGTTGGAGGGGTGAGCTATTTCGTCAGTCTTAGATTAAAAAATGTGCATAAATTTTGAGTTTAAAGATTTTTGTACCCTTCCCTTTTATAATTAGAGACTATAAACATCTATGGCTGGTTGGAAAAAATAATATTTATGGCATTTTTAGCTTTTGAGTTTAGATTTTCAGCTTTAGTTTTCATTGGTTATTTCGAGATTTTATACTTTCTCGCCTTTTATTGGTTTATTAATTTAATT

mRNA sequence

ATGTTGGCTTATGGGAACAAGTGGCCAATATTAACATTTATAATTGCTGCTGCAACTGTCAATGCGCAAGGTTTGAATTGTGCGAGGATCTTTTATGTTATTGGTATCACAATTGCTGATATTTGCACTTCTATGTATGACGAAACAGCAAACATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGCGAGCTTGTGTTCAAGGAAGATGGTCAGGAGTATGCACAAGTTCTCAGAATGTTGGGGAACGGTCGGTGTGAGGCAATGTGCATCGACGGGTCGAAGCGTCTTTGCCATATCCGAGGGAAGATGCACAAGAAGGTCTGGATTGCAGCTGGTGATATAATACTCGTTGGTCTTCGCGACTATCAGGATGATAAAGCTGATGTTATCCTCAAGTACATGCCTGATGAAGCAAGGCTGTTGAAGGCATATGGAGAGCTTCCTGAGAACACCCGCCTCAACGAGGGTATCGCTGGCGGAATCGACGACGAGGATGATGGTGGGGTTGATGATTATCTGGAGTTTGAGGATGAAGATATTGATAAGATTTAGGGTTCGAGTGATTATTATTGATGTTTGGTAACCCCCATGGTTGGAGGGGTGAGCTATTTCGTCAGTCTTAGATTAAAAAATGTGCATAAATTTTGAGTTTAAAGATTTTTGTACCCTTCCCTTTTATAATTAGAGACTATAAACATCTATGGCTGGTTGGAAAAAATAATATTTATGGCATTTTTAGCTTTTGAGTTTAGATTTTCAGCTTTAGTTTTCATTGGTTATTTCGAGATTTTATACTTTCTCGCCTTTTATTGGTTTATTAATTTAATT

Coding sequence (CDS)

ATGTTGGCTTATGGGAACAAGTGGCCAATATTAACATTTATAATTGCTGCTGCAACTGTCAATGCGCAAGGTTTGAATTGTGCGAGGATCTTTTATGTTATTGGTATCACAATTGCTGATATTTGCACTTCTATGTATGACGAAACAGCAAACATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGCGAGCTTGTGTTCAAGGAAGATGGTCAGGAGTATGCACAAGTTCTCAGAATGTTGGGGAACGGTCGGTGTGAGGCAATGTGCATCGACGGGTCGAAGCGTCTTTGCCATATCCGAGGGAAGATGCACAAGAAGGTCTGGATTGCAGCTGGTGATATAATACTCGTTGGTCTTCGCGACTATCAGGATGATAAAGCTGATGTTATCCTCAAGTACATGCCTGATGAAGCAAGGCTGTTGAAGGCATATGGAGAGCTTCCTGAGAACACCCGCCTCAACGAGGGTATCGCTGGCGGAATCGACGACGAGGATGATGGTGGGGTTGATGATTATCTGGAGTTTGAGGATGAAGATATTGATAAGATTTAG

Protein sequence

MLAYGNKWPILTFIIAAATVNAQGLNCARIFYVIGITIADICTSMYDETANMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIAGGIDDEDDGGVDDYLEFEDEDIDKI
Homology
[Close]
BLAST of Cp4.1LG16g04160 vs. ExPASy Swiss-Prot
Match: P56331 (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia OX=3882 PE=2 SV=2)

HSP 1 Score: 261.9 bits (668), Expect = 5.7e-69
Identity = 133/146 (91.10%), Postives = 140/146 (95.89%), Query Frame = 0 

Query: 52  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 111
           MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG+KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 112 IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGI- 171
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILK MPDEARLLKAYGELP+NTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNEGIG 120

Query: 172 AGGIDDEDDGGVDDYLEFEDEDIDKI 197
           AGG+D+E D   +DY+EFEDEDIDKI
Sbjct: 121 AGGLDEEMD-TANDYIEFEDEDIDKI 145

[Close]
BLAST of Cp4.1LG16g04160 vs. ExPASy Swiss-Prot
Match: P47815 (Eukaryotic translation initiation factor 1A OS=Triticum aestivum OX=4565 PE=1 SV=2)

HSP 1 Score: 245.7 bits (626), Expect = 4.2e-64
Identity = 122/146 (83.56%), Postives = 134/146 (91.78%), Query Frame = 0 

Query: 52  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 111
           MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQV RMLGNGRCEA+C+DG+KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCH 60

Query: 112 IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 171
           IRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELP+  RLNEG+ 
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGV- 120

Query: 172 GGIDDEDDG-GVDDYLEFEDEDIDKI 197
             +D  ++G G  DY++FEDEDIDKI
Sbjct: 121 -DVDGPEEGEGDSDYIQFEDEDIDKI 144

[Close]
BLAST of Cp4.1LG16g04160 vs. ExPASy Swiss-Prot
Match: P47813 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens OX=9606 GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 204.1 bits (518), Expect = 1.4e-51
Identity = 106/145 (73.10%), Postives = 119/145 (82.07%), Query Frame = 0 

Query: 52  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 111
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 112 IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 171
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE+ ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 172 GGIDDEDDGGVDDYLEFEDEDIDKI 197
            G  D+D+   DD +  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]
BLAST of Cp4.1LG16g04160 vs. ExPASy Swiss-Prot
Match: Q8BMJ3 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus OX=10090 GN=Eif1ax PE=2 SV=3)

HSP 1 Score: 204.1 bits (518), Expect = 1.4e-51
Identity = 106/145 (73.10%), Postives = 119/145 (82.07%), Query Frame = 0 

Query: 52  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 111
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 112 IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 171
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE+ ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 172 GGIDDEDDGGVDDYLEFEDEDIDKI 197
            G  D+D+   DD +  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]
BLAST of Cp4.1LG16g04160 vs. ExPASy Swiss-Prot
Match: Q5RA42 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii OX=9601 GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 204.1 bits (518), Expect = 1.4e-51
Identity = 106/145 (73.10%), Postives = 119/145 (82.07%), Query Frame = 0 

Query: 52  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 111
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 112 IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 171
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE+ ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 172 GGIDDEDDGGVDDYLEFEDEDIDKI 197
            G  D+D+   DD +  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]
BLAST of Cp4.1LG16g04160 vs. NCBI nr
Match: KAG6570922.1 (hypothetical protein SDJN03_29837, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 299 bits (766), Expect = 1.33e-98
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 48  ETANMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSK 107
           ETANMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSK
Sbjct: 200 ETANMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSK 259

Query: 108 RLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLN 167
           RLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLN
Sbjct: 260 RLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLN 319

Query: 168 EGIAGGIDDEDDGGVDDYLEFEDEDIDKI 196
           EGIAGGIDDEDDGGVDDYLEFEDEDIDKI
Sbjct: 320 EGIAGGIDDEDDGGVDDYLEFEDEDIDKI 348

[Close]
BLAST of Cp4.1LG16g04160 vs. NCBI nr
Match: XP_022944639.1 (eukaryotic translation initiation factor 1A-like [Cucurbita moschata] >XP_022944641.1 eukaryotic translation initiation factor 1A-like [Cucurbita moschata] >XP_022944725.1 eukaryotic translation initiation factor 1A-like [Cucurbita moschata] >XP_022986398.1 eukaryotic translation initiation factor 1A-like [Cucurbita maxima] >XP_022986399.1 eukaryotic translation initiation factor 1A-like [Cucurbita maxima] >XP_023513346.1 eukaryotic translation initiation factor 1A-like [Cucurbita pepo subsp. pepo] >XP_023513347.1 eukaryotic translation initiation factor 1A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 291 bits (746), Expect = 1.57e-98
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0 

Query: 52  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 111
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 60

Query: 112 IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 171
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 172 GGIDDEDDGGVDDYLEFEDEDIDKI 196
           GGIDDEDDGGVDDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 145

[Close]
BLAST of Cp4.1LG16g04160 vs. NCBI nr
Match: XP_022145199.1 (eukaryotic translation initiation factor 1A [Momordica charantia] >XP_022956094.1 eukaryotic translation initiation factor 1A [Cucurbita moschata] >XP_022956095.1 eukaryotic translation initiation factor 1A [Cucurbita moschata] >XP_022979975.1 eukaryotic translation initiation factor 1A [Cucurbita maxima] >XP_022979976.1 eukaryotic translation initiation factor 1A [Cucurbita maxima] >XP_023527417.1 eukaryotic translation initiation factor 1A [Cucurbita pepo subsp. pepo] >XP_023527418.1 eukaryotic translation initiation factor 1A [Cucurbita pepo subsp. pepo] >XP_038902096.1 eukaryotic translation initiation factor 1A [Benincasa hispida] >XP_038902102.1 eukaryotic translation initiation factor 1A [Benincasa hispida])

HSP 1 Score: 287 bits (734), Expect = 1.06e-96
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0 

Query: 52  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 111
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG+KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 112 IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 171
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE+TRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 172 GGIDDEDDGGVDDYLEFEDEDIDKI 196
           GGIDDEDDGG DDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGADDYLEFEDEDIDKI 145

[Close]
BLAST of Cp4.1LG16g04160 vs. NCBI nr
Match: XP_022770527.1 (eukaryotic translation initiation factor 1A [Durio zibethinus])

HSP 1 Score: 287 bits (734), Expect = 1.06e-96
Identity = 140/145 (96.55%), Postives = 144/145 (99.31%), Query Frame = 0 

Query: 52  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 111
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 60

Query: 112 IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 171
           IRGKMHKKVWIAAGDIILVGLRDYQDDKAD+ILKYMPDEARLLKAYGELPENTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADIILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 172 GGIDDEDDGGVDDYLEFEDEDIDKI 196
           GGID+EDDGG DDY+EFEDEDIDKI
Sbjct: 121 GGIDEEDDGGADDYIEFEDEDIDKI 145

[Close]
BLAST of Cp4.1LG16g04160 vs. NCBI nr
Match: XP_022932723.1 (eukaryotic translation initiation factor 1A-like [Cucurbita moschata] >XP_022972115.1 eukaryotic translation initiation factor 1A-like [Cucurbita maxima] >XP_023540729.1 eukaryotic translation initiation factor 1A-like [Cucurbita pepo subsp. pepo] >XP_023540730.1 eukaryotic translation initiation factor 1A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 286 bits (733), Expect = 1.50e-96
Identity = 142/145 (97.93%), Postives = 143/145 (98.62%), Query Frame = 0 

Query: 52  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 111
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEA CIDG+KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 60

Query: 112 IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 171
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 172 GGIDDEDDGGVDDYLEFEDEDIDKI 196
           GGIDDEDDGG DDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGADDYLEFEDEDIDKI 145

[Close]
BLAST of Cp4.1LG16g04160 vs. ExPASy TrEMBL
Match: A0A6J1JGD8 (Eukaryotic translation initiation factor 4C OS=Cucurbita maxima OX=3661 GN=LOC111484147 PE=3 SV=1)

HSP 1 Score: 291 bits (746), Expect = 7.60e-99
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0 

Query: 52  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 111
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 60

Query: 112 IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 171
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 172 GGIDDEDDGGVDDYLEFEDEDIDKI 196
           GGIDDEDDGGVDDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 145

[Close]
BLAST of Cp4.1LG16g04160 vs. ExPASy TrEMBL
Match: A0A6J1FYW3 (Eukaryotic translation initiation factor 4C OS=Cucurbita moschata OX=3662 GN=LOC111449098 PE=3 SV=1)

HSP 1 Score: 291 bits (746), Expect = 7.60e-99
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0 

Query: 52  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 111
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 60

Query: 112 IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 171
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 172 GGIDDEDDGGVDDYLEFEDEDIDKI 196
           GGIDDEDDGGVDDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGVDDYLEFEDEDIDKI 145

[Close]
BLAST of Cp4.1LG16g04160 vs. ExPASy TrEMBL
Match: A0A6J1IS99 (Eukaryotic translation initiation factor 4C OS=Cucurbita maxima OX=3661 GN=LOC111479507 PE=3 SV=1)

HSP 1 Score: 287 bits (734), Expect = 5.12e-97
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0 

Query: 52  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 111
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG+KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 112 IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 171
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE+TRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 172 GGIDDEDDGGVDDYLEFEDEDIDKI 196
           GGIDDEDDGG DDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGADDYLEFEDEDIDKI 145

[Close]
BLAST of Cp4.1LG16g04160 vs. ExPASy TrEMBL
Match: A0A6J1GY26 (Eukaryotic translation initiation factor 4C OS=Cucurbita moschata OX=3662 GN=LOC111457892 PE=3 SV=1)

HSP 1 Score: 287 bits (734), Expect = 5.12e-97
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0 

Query: 52  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 111
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG+KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 112 IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 171
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE+TRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 172 GGIDDEDDGGVDDYLEFEDEDIDKI 196
           GGIDDEDDGG DDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGADDYLEFEDEDIDKI 145

[Close]
BLAST of Cp4.1LG16g04160 vs. ExPASy TrEMBL
Match: A0A6J1CUI5 (Eukaryotic translation initiation factor 4C OS=Momordica charantia OX=3673 GN=LOC111014705 PE=3 SV=1)

HSP 1 Score: 287 bits (734), Expect = 5.12e-97
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0 

Query: 52  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 111
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDG+KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 112 IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 171
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE+TRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 172 GGIDDEDDGGVDDYLEFEDEDIDKI 196
           GGIDDEDDGG DDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGADDYLEFEDEDIDKI 145

[Close]
BLAST of Cp4.1LG16g04160 vs. TAIR 10
Match: AT2G04520.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 270.8 bits (691), Expect = 8.7e-73
Identity = 131/145 (90.34%), Postives = 139/145 (95.86%), Query Frame = 0 

Query: 52  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 111
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDG+KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 112 IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 171
           IRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELPENTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 172 GGIDDEDDGGVDDYLEFEDEDIDKI 197
           G ++D+DD   DDY+EFEDEDID+I
Sbjct: 121 GDLEDDDDNNDDDYVEFEDEDIDRI 145

[Close]
BLAST of Cp4.1LG16g04160 vs. TAIR 10
Match: AT5G35680.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 265.4 bits (677), Expect = 3.7e-71
Identity = 130/145 (89.66%), Postives = 137/145 (94.48%), Query Frame = 0 

Query: 52  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 111
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 112 IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 171
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEARLLKAYGELPENTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 172 GGIDDEDDGGVDDYLEFEDEDIDKI 197
           G +DD+DD   +DY+EFEDEDID+I
Sbjct: 121 GDLDDDDDVVGEDYIEFEDEDIDRI 145

[Close]
BLAST of Cp4.1LG16g04160 vs. TAIR 10
Match: AT5G35680.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 265.4 bits (677), Expect = 3.7e-71
Identity = 130/145 (89.66%), Postives = 137/145 (94.48%), Query Frame = 0 

Query: 52  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 111
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 112 IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 171
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEARLLKAYGELPENTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 172 GGIDDEDDGGVDDYLEFEDEDIDKI 197
           G +DD+DD   +DY+EFEDEDID+I
Sbjct: 121 GDLDDDDDVVGEDYIEFEDEDIDRI 145

[Close]
BLAST of Cp4.1LG16g04160 vs. TAIR 10
Match: AT5G35680.3 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 246.9 bits (629), Expect = 1.3e-65
Identity = 119/128 (92.97%), Postives = 123/128 (96.09%), Query Frame = 0 

Query: 52  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCH 111
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 112 IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 171
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEARLLKAYGELPENTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 172 GGIDDEDD 180
           G +DD+DD
Sbjct: 121 GDLDDDDD 128

The following BLAST results are available for this feature:
BLAST of Cp4.1LG16g04160 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P563315.7e-6991.10Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia OX=3882 PE=... [more]
P478154.2e-6483.56Eukaryotic translation initiation factor 1A OS=Triticum aestivum OX=4565 PE=1 SV... [more]
P478131.4e-5173.10Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens OX=96... [more]
Q8BMJ31.4e-5173.10Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus OX=10... [more]
Q5RA421.4e-5173.10Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii OX=96... [more]
BLAST of Cp4.1LG16g04160 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6570922.11.33e-98100.00hypothetical protein SDJN03_29837, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022944639.11.57e-98100.00eukaryotic translation initiation factor 1A-like [Cucurbita moschata] >XP_022944... [more]
XP_022145199.11.06e-9697.93eukaryotic translation initiation factor 1A [Momordica charantia] >XP_022956094.... [more]
XP_022770527.11.06e-9696.55eukaryotic translation initiation factor 1A [Durio zibethinus][more]
XP_022932723.11.50e-9697.93eukaryotic translation initiation factor 1A-like [Cucurbita moschata] >XP_022972... [more]
BLAST of Cp4.1LG16g04160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JGD87.60e-99100.00Eukaryotic translation initiation factor 4C OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1FYW37.60e-99100.00Eukaryotic translation initiation factor 4C OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1IS995.12e-9797.93Eukaryotic translation initiation factor 4C OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1GY265.12e-9797.93Eukaryotic translation initiation factor 4C OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1CUI55.12e-9797.93Eukaryotic translation initiation factor 4C OS=Momordica charantia OX=3673 GN=LO... [more]
BLAST of Cp4.1LG16g04160 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G04520.18.7e-7390.34Nucleic acid-binding, OB-fold-like protein [more]
AT5G35680.13.7e-7189.66Nucleic acid-binding, OB-fold-like protein [more]
AT5G35680.23.7e-7189.66Nucleic acid-binding, OB-fold-like protein [more]
AT5G35680.31.3e-6592.97Nucleic acid-binding, OB-fold-like protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001253Translation initiation factor 1A (eIF-1A)SMARTSM00652eIF1neu4coord: 79..161
e-value: 1.4E-48
score: 177.4
IPR001253Translation initiation factor 1A (eIF-1A)TIGRFAMTIGR00523TIGR00523coord: 65..161
e-value: 1.9E-34
score: 115.6
IPR001253Translation initiation factor 1A (eIF-1A)PANTHERPTHR21668EIF-1Acoord: 52..196
IPR001253Translation initiation factor 1A (eIF-1A)HAMAPMF_00216aIF_1Acoord: 67..161
score: 18.353327
IPR001253Translation initiation factor 1A (eIF-1A)CDDcd05793S1_IF1Acoord: 84..160
e-value: 1.96075E-43
score: 138.04
IPR006196RNA-binding domain, S1, IF1 typePFAMPF01176eIF-1acoord: 83..144
e-value: 7.9E-22
score: 76.9
IPR006196RNA-binding domain, S1, IF1 typePROSITEPS50832S1_IF1_TYPEcoord: 73..147
score: 31.623802
NoneNo IPR availableGENE3D2.40.50.140coord: 53..196
e-value: 7.8E-58
score: 196.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..75
NoneNo IPR availablePANTHERPTHR21668:SF18EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKEcoord: 52..196
IPR018104Translation initiation factor 1A (eIF-1A), conserved sitePROSITEPS01262IF1Acoord: 92..114
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 53..195

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g04160.1Cp4.1LG16g04160.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006413 translational initiation
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003723 RNA binding