Cp4.1LG16g04070 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG16g04070
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionRRM domain-containing protein
LocationCp4.1LG16: 5601967 .. 5603458 (+)
RNA-Seq ExpressionCp4.1LG16g04070
SyntenyCp4.1LG16g04070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGAGGTGTAGTCTACATGTTCGACGAAATGTCTAGTCGATTTCAGACCTCAGTTCATGATGTGTGCCTCTGGGTTGAAGCTTTTTGCTTCATTTCCATTCATAATTCCAATGATTTTTTAGGAAAAAAGTTGTTTCATTGAAGTTTCCTGTTTTACTATGCTTCTATGATTTTCTTGGAATATTGAGACAGCAAGACAATGAGAAATTTAGAGATTGGAAATTCTGCATGAAGAACTGTGAAGTACAACGAATTTGAGAGGTGGGAAATTAAAATTTATGTTTGAGCTGAAAGAAATTTGATGGCCATTAGTGATCACTCTGGAACTTCTCCAGCAAAATAGCTTATGGACATGGAGTTCATTTGGTATAGTTTAGATGAAATTGAATGGTGGCTGTGAAAAATCAATGGTGAGCATTGTAGAAACCTTGAAGCCCATTGGTTATCGCTCTGAAACTTCTCCAGAAATTAGCCTATGGAATTCAATTGATATAGTTAGGATGAAATTCAATAGCCACTGAGAAACTTCATTAATCATCACTAAAGGAACTTTCATATCCATTGCTGATCACTCTCAAACTTCATCAGCAAATTGCTTATTAAGTTGAGTTCAAGCATGTTTGGGAGTGATTTGAAATGCGTAAATTTATCATTTCTTTCATTTTCAGATGCTTTTAATCCTTCAAAATCAATTTTGATAGCATAAAACGTGTTAGGAGTGATTTTGAACCTGAAAAATGTGTTTTTAACCATTTCAAAATCACACTCTAACAAGCCTTTCTGTTGAGATTTGAATGTTTATATACTCTCTTGACAGTCAGGATAATGTATGATAAAGACTCAGGTCGATCCAGAGGCTTCGGATTTGTGAACTTCACAAATGAAGACGATGCACAAACTGCAAAAGATGCAATGGATGGAAAGGCAAGTCACTATTTAATAAGAAGTTGTTTGACAATGTTTAATCTAACATCCTAAATTAGTCAAAATGATAGTCATCCCGTCACTTTCAGGCACTATTAGGGCGGCCGTTACGAATAAGCTTTGCCCTCGACAAGGTCCGTGGCGGACCTGTTGTCGTTCCTCGACTTTCAAACATCAACAACGTGTTTGGCCGAAGATCTTGAAGCTCTTGGTATTTCATCTTCATCTACCTGGAGCATGAATATGTAAGCTTGAACTGTTCAATTCCTACTTCATAATCTGAATCTTGACTTGGTTCTGGAGGTGAATGCTAGACAGGTGTGGGAACCAATAGTATGAAGAACCTTAATTTAGGATTGTTTAATTAGATATTTCCAGTCTATTTGTTCAGAAATCTTGTTTTCCATCTTAATAGTATCCTTGTCCAGTACATTAGATCTATTTGCTTGATTTTTTTATTGGAGTTTGCATTCAAGCACAATTTTAGTTCTGATAAGATTCTAGTGGCATTTTCATAGATTTTTTTTTTATCAGGAAAGGAGAACTATTTTTCACATTCAATAG

mRNA sequence

ATGTATGAGATGAAATTGAATGGTGGCTGTGAAAAATCAATGGTGAGCATTGTAGAAACCTTGAAGCCCATTGGTTATCGCTCTGAAACTTCTCCAGAAATTAGCCTATGGAATTCAATTGATATAGCACTATTAGGGCGGCCGTTACGAATAAGCTTTGCCCTCGACAAGGTCCGTGGCGGACCTGTTGTCGTTCCTCGACTTTCAAACATCAACAACGAAAGGAGAACTATTTTTCACATTCAATAG

Coding sequence (CDS)

ATGTATGAGATGAAATTGAATGGTGGCTGTGAAAAATCAATGGTGAGCATTGTAGAAACCTTGAAGCCCATTGGTTATCGCTCTGAAACTTCTCCAGAAATTAGCCTATGGAATTCAATTGATATAGCACTATTAGGGCGGCCGTTACGAATAAGCTTTGCCCTCGACAAGGTCCGTGGCGGACCTGTTGTCGTTCCTCGACTTTCAAACATCAACAACGAAAGGAGAACTATTTTTCACATTCAATAG

Protein sequence

MYEMKLNGGCEKSMVSIVETLKPIGYRSETSPEISLWNSIDIALLGRPLRISFALDKVRGGPVVVPRLSNINNERRTIFHIQ
Homology
[Close]
BLAST of Cp4.1LG16g04070 vs. NCBI nr
Match: XP_022986397.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 64.3 bits (155), Expect = 1.25e-10
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 43  ALLGRPLRISFALDKVRGGPVVVPRLSNINN 73
           ALLGRPLRISFALDKVRGGPVVVPRLSNINN
Sbjct: 115 ALLGRPLRISFALDKVRGGPVVVPRLSNINN 145

[Close]
BLAST of Cp4.1LG16g04070 vs. NCBI nr
Match: XP_023512965.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 64.3 bits (155), Expect = 1.25e-10
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 43  ALLGRPLRISFALDKVRGGPVVVPRLSNINN 73
           ALLGRPLRISFALDKVRGGPVVVPRLSNINN
Sbjct: 115 ALLGRPLRISFALDKVRGGPVVVPRLSNINN 145

[Close]
BLAST of Cp4.1LG16g04070 vs. NCBI nr
Match: XP_038902171.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 62.4 bits (150), Expect = 6.83e-10
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 43  ALLGRPLRISFALDKVRGGPVVVPRLSNINN 73
           ALLGRPLRISFALDKVRGGPVVVPRLSNI+N
Sbjct: 114 ALLGRPLRISFALDKVRGGPVVVPRLSNIDN 144

[Close]
BLAST of Cp4.1LG16g04070 vs. NCBI nr
Match: XP_022140496.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 1.20e-09
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = 0 

Query: 43  ALLGRPLRISFALDKVRGGPVVVPRLSNINN 73
           ALLGRPLRISFALDKVRGGPVVVPRLSN+ N
Sbjct: 108 ALLGRPLRISFALDKVRGGPVVVPRLSNVGN 138

[Close]
BLAST of Cp4.1LG16g04070 vs. NCBI nr
Match: KAG6570903.1 (Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.6 bits (148), Expect = 1.36e-09
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 43  ALLGRPLRISFALDKVRGGPVVVPRLSNIN 72
           ALLGRPLRISFALDKVRGGPVV+PRLSNIN
Sbjct: 115 ALLGRPLRISFALDKVRGGPVVIPRLSNIN 144

[Close]
BLAST of Cp4.1LG16g04070 vs. ExPASy TrEMBL
Match: A0A6J1J7F1 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111484146 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.05e-11
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 43  ALLGRPLRISFALDKVRGGPVVVPRLSNINN 73
           ALLGRPLRISFALDKVRGGPVVVPRLSNINN
Sbjct: 115 ALLGRPLRISFALDKVRGGPVVVPRLSNINN 145

[Close]
BLAST of Cp4.1LG16g04070 vs. ExPASy TrEMBL
Match: A0A6J1CG90 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111011148 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.83e-10
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = 0 

Query: 43  ALLGRPLRISFALDKVRGGPVVVPRLSNINN 73
           ALLGRPLRISFALDKVRGGPVVVPRLSN+ N
Sbjct: 108 ALLGRPLRISFALDKVRGGPVVVPRLSNVGN 138

[Close]
BLAST of Cp4.1LG16g04070 vs. ExPASy TrEMBL
Match: A0A6J1FYH8 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111448693 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.57e-10
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 43  ALLGRPLRISFALDKVRGGPVVVPRLSNIN 72
           ALLGRPLRISFALDKVRGGPVV+PRLSNIN
Sbjct: 115 ALLGRPLRISFALDKVRGGPVVIPRLSNIN 144

[Close]
BLAST of Cp4.1LG16g04070 vs. ExPASy TrEMBL
Match: A0A6A1VAQ0 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Morella rubra OX=262757 GN=CJ030_MR6G025260 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.94e-09
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 38  NSIDIALLGRPLRISFALDKVRGGPVVVPRLSNINN 73
           N   IALLGRPLRISFAL+KVRGGP+VVPRLSNI +
Sbjct: 112 NESSIALLGRPLRISFALEKVRGGPMVVPRLSNIGD 147

[Close]
BLAST of Cp4.1LG16g04070 vs. ExPASy TrEMBL
Match: A0A0A0LQB7 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G416100 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.84e-09
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = 0 

Query: 43  ALLGRPLRISFALDKVRGGPVVVPRLSNINN 73
           A+LGRPLRISFALDKVRG PVVVPRLSNINN
Sbjct: 109 AVLGRPLRISFALDKVRGEPVVVPRLSNINN 139

[Close]
BLAST of Cp4.1LG16g04070 vs. TAIR 10
Match: AT3G08000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-08
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 44  LLGRPLRISFALDKVRGGPVVVPRLSNINNERRTIF 80
           LLGRPLRISFAL++VRGGPVVVPRL     ER  +F
Sbjct: 107 LLGRPLRISFALERVRGGPVVVPRLGKSKRERERVF 142

The following BLAST results are available for this feature:
BLAST of Cp4.1LG16g04070 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG16g04070 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022986397.11.25e-10100.00glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima][more]
XP_023512965.11.25e-10100.00glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pe... [more]
XP_038902171.16.83e-1096.77glycine-rich RNA-binding protein 4, mitochondrial-like [Benincasa hispida][more]
XP_022140496.11.20e-0993.55glycine-rich RNA-binding protein 4, mitochondrial-like [Momordica charantia][more]
KAG6570903.11.36e-0996.67Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosper... [more]
BLAST of Cp4.1LG16g04070 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1J7F16.05e-11100.00glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita maxima OX=36... [more]
A0A6J1CG905.83e-1093.55glycine-rich RNA-binding protein 4, mitochondrial-like OS=Momordica charantia OX... [more]
A0A6J1FYH86.57e-1096.67glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita moschata OX=... [more]
A0A6A1VAQ01.94e-0980.56Glycine-rich RNA-binding protein 4, mitochondrial OS=Morella rubra OX=262757 GN=... [more]
A0A0A0LQB72.84e-0993.55RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G416100 PE=4 SV... [more]
BLAST of Cp4.1LG16g04070 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G08000.11.1e-0872.22RNA-binding (RRM/RBD/RNP motifs) family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g04070.1Cp4.1LG16g04070.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003729 mRNA binding