Cp4.1LG16g02320 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG16g02320
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	transcription factor RADIALIS-like
Location	Cp4.1LG16: 4481063 .. 4481599 (+)
RNA-Seq Expression	Cp4.1LG16g02320
Synteny	Cp4.1LG16g02320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCATGTCCTCCTCTCATCACTCTTCCTCTTGGACTCCCAAGCAAAACAAAGCCTTTGAGAGGGCCTTGGCTGTCTTTGACAAGGACACCCCAGATCGTTGGCTCAATGTTGCCAAGGCCGTCGGCGGGGGCAAGACCCCCGACGAGGTCAAGACCCATTTCGACCTTCTCGTCGAAGATGTCAAACACATTGAATCCGGCCACGTACCATTCCCTAATTATTCCTCTACTGCTTCTGCCTCCGAAACGTCCAATGCCAACGTCAGTGATCAAGAACAAAGGTACCTCTTCAAAATACACTCTTAACTACTCAACCATGTTATATGTTTTAAGTTTTTTTTTTGTTTTTTTTTTTTGATAAATATCCGTACATCTTTTTCTTTACTAGAAAATTCCAATTTCTAAGTCGCTATCAACTTATATTTTGGTTTGCTTTTGAGATTTTTTGCGTCTATTTCAATTATTTTGATATTTTTTAGTCCTTCCGAATAACTCTTATTTTCTTATTTTTTTTCTTTTTTCTTTAGGTAA

mRNA sequence

ATGGCTTCCATGTCCTCCTCTCATCACTCTTCCTCTTGGACTCCCAAGCAAAACAAAGCCTTTGAGAGGGCCTTGGCTGTCTTTGACAAGGACACCCCAGATCGTTGGCTCAATGTTGCCAAGGCCGTCGGCGGGGGCAAGACCCCCGACGAGGTCAAGACCCATTTCGACCTTCTCGTCGAAGATGTCAAACACATTGAATCCGGCCACGTACCATTCCCTAATTATTCCTCTACTGCTTCTGCCTCCGAAACGTCCAATGCCAACGTCAGTGATCAAGAACAAAGGTAA

Coding sequence (CDS)

ATGGCTTCCATGTCCTCCTCTCATCACTCTTCCTCTTGGACTCCCAAGCAAAACAAAGCCTTTGAGAGGGCCTTGGCTGTCTTTGACAAGGACACCCCAGATCGTTGGCTCAATGTTGCCAAGGCCGTCGGCGGGGGCAAGACCCCCGACGAGGTCAAGACCCATTTCGACCTTCTCGTCGAAGATGTCAAACACATTGAATCCGGCCACGTACCATTCCCTAATTATTCCTCTACTGCTTCTGCCTCCGAAACGTCCAATGCCAACGTCAGTGATCAAGAACAAAGGTAA

Protein sequence

MASMSSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASETSNANVSDQEQR

Homology

[Close]

BLAST of Cp4.1LG16g02320 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.1e-24
Identity = 60/97 (61.86%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 1  MASMS-SSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLL 60
          MAS S SS+ S SWT KQNKAFERALAV+D+DTPDRW NVA+AV GGKTP+E K  +DLL
Sbjct: 1  MASGSMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYDLL 60

Query: 61 VEDVKHIESGHVPFPNYSSTASASETSNANVSDQEQR 97
          V D++ IE+GHVPFP+Y +T   S  +   + D+E+R
Sbjct: 61 VRDIESIENGHVPFPDYKTTTGNS--NRGRLRDEEKR 94

[Close]

BLAST of Cp4.1LG16g02320 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.9e-23
Identity = 57/97 (58.76%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 1  MASMS-SSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLL 60
          MAS S SS  S SWT KQNKAFE+ALA +D+DTP+RW NVAK V GGKT +EVK H++LL
Sbjct: 1  MASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYELL 60

Query: 61 VEDVKHIESGHVPFPNYSSTASASETSNANVSDQEQR 97
          V+D+  IE+GHVPFPNY ++      +N  +S +E+R
Sbjct: 61 VQDINSIENGHVPFPNYRTSGGC---TNGRLSQEEKR 93

[Close]

BLAST of Cp4.1LG16g02320 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.9e-23
Identity = 49/73 (67.12%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 13 WTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVP 72
          W+ K+NKAFERALAV+DKDTPDRW NVA+AV  G+TP+EVK H+++LVED+K+IESG VP
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAV-EGRTPEEVKKHYEILVEDIKYIESGKVP 70

Query: 73 FPNYSSTASASET 86
          FPNY +T    +T
Sbjct: 71 FPNYRTTGGNMKT 82

[Close]

BLAST of Cp4.1LG16g02320 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.3e-21
Identity = 56/87 (64.37%), Postives = 65/87 (74.71%), Query Frame = 0


Query: 1  MASMSSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
          MAS S S   S WT  QNK FERALAV+DKDTPDRW NVAKAV GGKT +EVK H+D+LV
Sbjct: 1  MASNSRS-SISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYDILV 60

Query: 61 EDVKHIESGHVPFPNYSSTASASETSN 88
          ED+ +IE+G VP PNY +  S S + N
Sbjct: 61 EDLINIETGRVPLPNYKTFESNSRSIN 85

[Close]

BLAST of Cp4.1LG16g02320 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.3e-20
Identity = 53/85 (62.35%), Postives = 63/85 (74.12%), Query Frame = 0


Query: 1  MASMSSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
          MAS SS   SSSWT KQNK FERALAV+DKDTPDRW NVAKAV G K+ +EVK H+D+LV
Sbjct: 1  MAS-SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYDILV 60

Query: 61 EDVKHIESGHVPFPNYSSTASASET 86
          ED+ +IE   VP P Y +    S++
Sbjct: 61 EDLMNIEQDLVPLPKYKTVDVGSKS 83

[Close]

BLAST of Cp4.1LG16g02320 vs. NCBI nr
Match: XP_023513343.1 (protein RADIALIS-like 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 192 bits (489), Expect = 1.06e-61
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MASMSSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
          MASMSSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV
Sbjct: 1  MASMSSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60

Query: 61 EDVKHIESGHVPFPNYSSTASASETSNANVSDQEQR 96
          EDVKHIESGHVPFPNYSSTASASETSNANVSDQEQR
Sbjct: 61 EDVKHIESGHVPFPNYSSTASASETSNANVSDQEQR 96

[Close]

BLAST of Cp4.1LG16g02320 vs. NCBI nr
Match: KAG6571113.1 (Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 186 bits (472), Expect = 4.16e-59
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MASMSSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
          MASMSSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV
Sbjct: 1  MASMSSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60

Query: 61 EDVKHIESGHVPFPNYSSTASASETSNANVSDQEQR 96
          EDVKHIESGHVPFPNYSSTAS S TSNAN++DQEQR
Sbjct: 61 EDVKHIESGHVPFPNYSSTASDSGTSNANINDQEQR 96

[Close]

BLAST of Cp4.1LG16g02320 vs. NCBI nr
Match: KAG6571117.1 (Protein RADIALIS-like 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 186 bits (472), Expect = 4.16e-59
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MASMSSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
          MASMSSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV
Sbjct: 1  MASMSSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60

Query: 61 EDVKHIESGHVPFPNYSSTASASETSNANVSDQEQR 96
          EDVKHIESGHVPFPNYSSTAS S TSNAN++DQEQR
Sbjct: 61 EDVKHIESGHVPFPNYSSTASDSGTSNANINDQEQR 96

[Close]

BLAST of Cp4.1LG16g02320 vs. NCBI nr
Match: XP_022944318.1 (protein RADIALIS-like 2 [Cucurbita moschata])

HSP 1 Score: 184 bits (467), Expect = 2.41e-58
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MASMSSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
          MASM+SSH SSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV
Sbjct: 1  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60

Query: 61 EDVKHIESGHVPFPNYSSTASASETSNANVSDQEQR 96
          EDVKHIESGHVPFPNYSSTASAS TSNAN++DQEQR
Sbjct: 61 EDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR 96

[Close]

BLAST of Cp4.1LG16g02320 vs. NCBI nr
Match: XP_022986646.1 (protein RADIALIS-like 2 [Cucurbita maxima])

HSP 1 Score: 184 bits (466), Expect = 3.42e-58
Identity = 90/96 (93.75%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MASMSSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
          MASMSSSHHSSSWTPK+NKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV
Sbjct: 1  MASMSSSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60

Query: 61 EDVKHIESGHVPFPNYSSTASASETSNANVSDQEQR 96
          EDVKHIE GHVPFPNYSSTASA+ TSNAN++DQEQR
Sbjct: 61 EDVKHIEFGHVPFPNYSSTASATGTSNANINDQEQR 96

[Close]

BLAST of Cp4.1LG16g02320 vs. ExPASy TrEMBL
Match: A0A6J1FXX9 (protein RADIALIS-like 2 OS=Cucurbita moschata OX=3662 GN=LOC111448798 PE=4 SV=1)

HSP 1 Score: 184 bits (467), Expect = 1.17e-58
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MASMSSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
          MASM+SSH SSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV
Sbjct: 1  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60

Query: 61 EDVKHIESGHVPFPNYSSTASASETSNANVSDQEQR 96
          EDVKHIESGHVPFPNYSSTASAS TSNAN++DQEQR
Sbjct: 61 EDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR 96

[Close]

BLAST of Cp4.1LG16g02320 vs. ExPASy TrEMBL
Match: A0A6J1JBS7 (protein RADIALIS-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111484324 PE=4 SV=1)

HSP 1 Score: 184 bits (466), Expect = 1.66e-58
Identity = 90/96 (93.75%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MASMSSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
          MASMSSSHHSSSWTPK+NKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV
Sbjct: 1  MASMSSSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60

Query: 61 EDVKHIESGHVPFPNYSSTASASETSNANVSDQEQR 96
          EDVKHIE GHVPFPNYSSTASA+ TSNAN++DQEQR
Sbjct: 61 EDVKHIEFGHVPFPNYSSTASATGTSNANINDQEQR 96

[Close]

BLAST of Cp4.1LG16g02320 vs. ExPASy TrEMBL
Match: A0A0A0LL58 (MYB transcription factor MYB142 OS=Cucumis sativus OX=3659 GN=Csa_2G247060 PE=4 SV=1)

HSP 1 Score: 157 bits (396), Expect = 7.40e-48
Identity = 80/96 (83.33%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 1  MASMSSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
          MAS+SSS  SSSWTP QNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVK HFD LV
Sbjct: 1  MASISSS--SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLV 60

Query: 61 EDVKHIESGHVPFPNYSSTASASETSNANVSDQEQR 96
          EDVKHIESG VPFP Y+S++S+  TSNAN+ DQEQR
Sbjct: 61 EDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQR 94

[Close]

BLAST of Cp4.1LG16g02320 vs. ExPASy TrEMBL
Match: A0A1S3CDK8 (protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103499673 PE=4 SV=1)

HSP 1 Score: 152 bits (384), Expect = 6.60e-46
Identity = 80/103 (77.67%), Postives = 87/103 (84.47%), Query Frame = 0


Query: 1   MASMSSSHH---SSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFD 60
           MAS+SSS H   SSSWTP QNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFD
Sbjct: 1   MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60

Query: 61  LLVEDVKHIESGHVPFPNYSSTASASE----TSNANVSDQEQR 96
            LVEDVKHIESG VPFP Y+S++S+S     +SNAN+ DQEQR
Sbjct: 61  RLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQR 103

[Close]

BLAST of Cp4.1LG16g02320 vs. ExPASy TrEMBL
Match: A0A6J1G543 (transcription factor RADIALIS-like OS=Cucurbita moschata OX=3662 GN=LOC111450995 PE=4 SV=1)

HSP 1 Score: 140 bits (352), Expect = 4.02e-41
Identity = 75/97 (77.32%), Postives = 84/97 (86.60%), Query Frame = 0


Query: 1  MASMSSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
          MAS+SSSH S+SW+P QNKAFE ALAVFDKDTPDRWLNVAKAVG  KT DEVK HF+LLV
Sbjct: 1  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGD-KTVDEVKRHFELLV 60

Query: 61 EDVKHIESGHVPFPNY-SSTASASETSNANVSDQEQR 96
          EDVKHIESG VPFPNY SS++SA  TS+ N++ QEQR
Sbjct: 61 EDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQR 96

[Close]

BLAST of Cp4.1LG16g02320 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 111.3 bits (277), Expect = 4.3e-25
Identity = 60/97 (61.86%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 1  MASMS-SSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLL 60
          MAS S SS+ S SWT KQNKAFERALAV+D+DTPDRW NVA+AV GGKTP+E K  +DLL
Sbjct: 1  MASGSMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYDLL 60

Query: 61 VEDVKHIESGHVPFPNYSSTASASETSNANVSDQEQR 97
          V D++ IE+GHVPFP+Y +T   S  +   + D+E+R
Sbjct: 61 VRDIESIENGHVPFPDYKTTTGNS--NRGRLRDEEKR 94

[Close]

BLAST of Cp4.1LG16g02320 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 108.6 bits (270), Expect = 2.8e-24
Identity = 57/97 (58.76%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 1  MASMS-SSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLL 60
          MAS S SS  S SWT KQNKAFE+ALA +D+DTP+RW NVAK V GGKT +EVK H++LL
Sbjct: 1  MASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYELL 60

Query: 61 VEDVKHIESGHVPFPNYSSTASASETSNANVSDQEQR 97
          V+D+  IE+GHVPFPNY ++      +N  +S +E+R
Sbjct: 61 VQDINSIENGHVPFPNYRTSGGC---TNGRLSQEEKR 93

[Close]

BLAST of Cp4.1LG16g02320 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 101.3 bits (251), Expect = 4.5e-22
Identity = 56/87 (64.37%), Postives = 65/87 (74.71%), Query Frame = 0


Query: 1  MASMSSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
          MAS S S   S WT  QNK FERALAV+DKDTPDRW NVAKAV GGKT +EVK H+D+LV
Sbjct: 1  MASNSRS-SISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYDILV 60

Query: 61 EDVKHIESGHVPFPNYSSTASASETSN 88
          ED+ +IE+G VP PNY +  S S + N
Sbjct: 61 EDLINIETGRVPLPNYKTFESNSRSIN 85

[Close]

BLAST of Cp4.1LG16g02320 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 101.3 bits (251), Expect = 4.5e-22
Identity = 56/87 (64.37%), Postives = 65/87 (74.71%), Query Frame = 0


Query: 1  MASMSSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
          MAS S S   S WT  QNK FERALAV+DKDTPDRW NVAKAV GGKT +EVK H+D+LV
Sbjct: 1  MASNSRS-SISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYDILV 60

Query: 61 EDVKHIESGHVPFPNYSSTASASETSN 88
          ED+ +IE+G VP PNY +  S S + N
Sbjct: 61 EDLINIETGRVPLPNYKTFESNSRSIN 85

[Close]

BLAST of Cp4.1LG16g02320 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 98.2 bits (243), Expect = 3.8e-21
Identity = 53/85 (62.35%), Postives = 63/85 (74.12%), Query Frame = 0


Query: 1  MASMSSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60
          MAS SS   SSSWT KQNK FERALAV+DKDTPDRW NVAKAV G K+ +EVK H+D+LV
Sbjct: 1  MAS-SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYDILV 60

Query: 61 EDVKHIESGHVPFPNYSSTASASET 86
          ED+ +IE   VP P Y +    S++
Sbjct: 61 EDLMNIEQDLVPLPKYKTVDVGSKS 83

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g02320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SIJ5	6.1e-24	61.86	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
F4JVB8	3.9e-23	58.76	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q58FS3	3.9e-23	67.12	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q1A173	6.3e-21	64.37	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q8GW75	5.3e-20	62.35	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]

BLAST of Cp4.1LG16g02320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023513343.1	1.06e-61	100.00	protein RADIALIS-like 2 [Cucurbita pepo subsp. pepo]	[more]
KAG6571113.1	4.16e-59	95.83	Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6571117.1	4.16e-59	95.83	Protein RADIALIS-like 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022944318.1	2.41e-58	94.79	protein RADIALIS-like 2 [Cucurbita moschata]	[more]
XP_022986646.1	3.42e-58	93.75	protein RADIALIS-like 2 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG16g02320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FXX9	1.17e-58	94.79	protein RADIALIS-like 2 OS=Cucurbita moschata OX=3662 GN=LOC111448798 PE=4 SV=1	[more]
A0A6J1JBS7	1.66e-58	93.75	protein RADIALIS-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111484324 PE=4 SV=1	[more]
A0A0A0LL58	7.40e-48	83.33	MYB transcription factor MYB142 OS=Cucumis sativus OX=3659 GN=Csa_2G247060 PE=4 ...	[more]
A0A1S3CDK8	6.60e-46	77.67	protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103499673 PE=4 SV=1	[more]
A0A6J1G543	4.02e-41	77.32	transcription factor RADIALIS-like OS=Cucurbita moschata OX=3662 GN=LOC111450995...	[more]

BLAST of Cp4.1LG16g02320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21650.1	4.3e-25	61.86	Homeodomain-like superfamily protein	[more]
AT4G39250.1	2.8e-24	58.76	RAD-like 1	[more]
AT1G75250.1	4.5e-22	64.37	RAD-like 6	[more]
AT1G75250.2	4.5e-22	64.37	RAD-like 6	[more]
AT1G19510.1	3.8e-21	62.35	RAD-like 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 9..62 e-value: 8.8E-5 score: 31.9
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 5..60 score: 6.005018
None	No IPR available	GENE3D	1.10.10.60		coord: 3..73 e-value: 7.0E-22 score: 79.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..96
None	No IPR available	PANTHER	PTHR43952:SF53	TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED	coord: 1..86
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..86
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 11..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g02320.1	Cp4.1LG16g02320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity