Cp4.1LG16g02040 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG16g02040
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	polyadenylate-binding protein RBP47-like
Location	Cp4.1LG16: 4251368 .. 4255088 (+)
RNA-Seq Expression	Cp4.1LG16g02040
Synteny	Cp4.1LG16g02040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTTCCTTTCTTTTTCCATTCAGGTTTTGAAATCTGTTTTATAATTTTTTTTTTTAATTTTTGTAAAGTTACCGGCGGAGATCCACCATCCACCACCGTTGCCACCACCGTTGCCACCACCGCCTTCTCTCTCTCTCTCCCATTATATTATTTTATTATTTTATTGTAACCTATCATTCACAATAAAACCTCTTTCTCATTCCCAATCTCCTCCTCTTTCTCTCCTTCTTTCTTTCTCTCTCCTTCAACAGCATCACTCTCTCTCTCTCTCCAACCTGGTCTTACTCCTTTGCATCCAACCGGAGCCGTCGTTTCTCGCTTAATCTCGTCGTCGGAGAGAGAAGGAAGAAGGAGACGGAGACGGAGAAGGAGACGTATACGTATACGGACGGATACGGAGACTCTTTGAAGATCATGGCCCAGCCGTCCAACGGAGCTGATCTCAATCCCCAGGCCCCCCACCCCCACCAACAATGGTTTCAACAACAACAACAGTATCAACAGCAATGGATGGCGATGCAGTATCCCGCAGCCGCCATGGCCATGATGCATCAACAACAGATGATGATGTATCCTCCTCAGCATTACATGACGTATTCTCACCTTCCTTATCAACAGCAGCCGCCGCCGTTGCAGCAGCAGCAGCAACAGCAAGCTCAGTCGCAGCGACCTCGCAGACAGGGGTCCACGGACGAGGTTAAGACGCTTTGGATTGGTGATCTTCAGCCCTGGATGGACGAGACCTATCTCCACAATTGTTTCGCTCACATCGGCGAGGTCTAACTTACTTATCGTATCGAGCTTTTACTTTTTACGATTCTCAACCTATTTTCGTTCTTCTAGTTTCTGTTCGATCGTTTTGCGGCTTTCTGTACAGAGATCGATCGGATTTCTTTATTTTTTTTCGTGCTTACGCGTTATAGAATTGATTTGAAGTCTGTGAATCTGTGATTGCTGGCATTATTATTGCTGCATCTTATATTGTTCCGAAATTGGATTGGTGGTCCAAAACAAGTCTCGCCAATGCAAGCAGAATTGTTACTGAAGAGGGGACAAATCCTAGACTGATTTATTTTTGTATGAGCATCTCTTTTTTTGCGCTTTGTTAATTACCGTTTGTTTGTCCTTGATTTGTCCTTTCAATTCTTCTTTGACATCATAATGATCGACGCAAATAGATCACAAGGTTTGCAATACTATTGGAGTTTATGTTTCCTTCCTCATGATGTCATGAATTTAAATTAAAGTAACGTGTATTATTGAGTTTAAATTGAAATAACGTGTGTTCGTTTCTTAGTTTCTTGTCTTAAAATAACTTGGGGCTGAATTTCATCAAACAATGTGTGATTGGTCTTCAGTGTCATTACTCTTTTGAAGGAGTTAGTGTATGGTATTGATTTACCATTATTCTTAATTCGTCCGTGCAGTGTTCTTGAGTGACATATTGCTTGCTTCTGATTCTGGTTTATTGGTCAATGGTTAGATGGATAACTGCAGACTGTCTTTTATATTTCCCCTGGTCTAATTCAATCTCCATCACGAGCATCTTTTTTCGATCATTAGTTGACTGAACTGTGTGTCTTCTGTTTGCTTCAGGTTTTCTCTGTTAAGGTTATATGCAATAAGCAAACTGGTCAATCTGAGGGCTATGGATTTGTTGAGTTCTATTCGCATGCAACAGCTGATAAGGTATTGCAGAGTTATAATGGAGCTATAATGCCTAACACAGATCTGCCTTTTCGTCTCAATTGGGCAACCTTTAGTGGAAGTGATAGGCGACCGGACACTGGGTCTGACCTATCTATATTTGTTGGTGATTTGGCTGCTGATGTAACTGATGCTATGCTGCAAGAAACTTTTTCTAGTAAATACACATCTGTTAAGGGAGCCAAGGTTGTTATTGATTCAAATTCAGGTCGTTCAAAAGGTTACGGATTTGTCAGGTTTGGTGATGAAAGTGAAAGGACAAGGGCTGTGACTGAAATGAATGGGATATATTGTTCAAGTAGACCCATGCGCATTGGTGTTGCAACACCAAAGAAAGCATCTGGATATCAACAAGGTTATTCATCACAAGGTTAGCCTTGGTTTTTCTGGCATTACTGTGGGTGTTGTTGTTCCTAAGGAATTGAAAGGCTTTAAATCATCATTAACCATCTCTATTACAAGCTTCATGAATGAATGAACTAATATGCCTCCATCCCTAACACACACCTAAAAAACAAAGAATAAGAAAGCAGAACACAAAAAGGTATTAAAAAGTTATCATTCAAAATTGTCCCGTTTGCAAGCAACTACAATAATTAATATAAAGTTGTTAATGGTCGTTACAGAAGTTTAACAGTGGGCAGTAGAATTGTTTGCGAACGGTTTCCTATTTCATTCTTCTGGTTTCATGGAATTAGTTCAGCGACTAAAGAAGGGATGGTTCTGAGGCTAGGGTTCTATTTTTCATTTTATTTCTTCCTTTTTGATGGATTTCCGTATTTCCATTTATATATCTTTATCAATTGATATACCTTGCAATACAAGTTGTACACTTTTAGAATACAAAATTTGCAATAGCAACATTTGCAGGATTTTTTATCCTTAACCCAGTGCTATTTGTTAAATCTTTCCATCCTCTAAATGCTAAACAGTTTCAGCATTAGTGATTTTCGAGACTATTGATGGAGACCAGTGATTTTGTCTGTGGATCTATTATTCTGTTAGTCATGTTTTTTGTCACATTATTCTTTGTTATCTGATACCCAAGTTGGATCGTATTGTAATGTTTTGGTACTGGTTTTTCTTGAAATCTTCTTTTATTTTCATCTTTCCCCTCCTGTTGCACTGATAAGTAAAACATCATTTCTCTGAGAAGTTTAGGGAACCAGCATNTGTTTTGGTACTGGTTTTTCTTGAAATCTTCTTTTATTTTCATCTTTCCCCTCCTGTTGCACTGATAAGTAAAACATCATTTCTCTGAGAAGTTTAGGGAACCAGCATACTGGCCAGTATTAGTGTCTTTTGGCTGTATGTCAGCTAGAGGGTGAAGAATAAAAGTTCGATGTTTTCATCGGACATGTGCATGGTTTGGAATCCGTCCTAGTAATATTTTCATTTTCATGAATGGATTTTAGGCATCAGAATTATGAACATAGATTTGCTATATACTTCTTGTGTAGAAGACGTTCTAATGTTTAATTTATTTTGCAGCTATAAGGTGTAGATGTGACTGAAAATGAAGTTTATGTGTTTTCAATATATATTTGAGTTTGAGTTTAGACGTTGATTCTGATGCCTATTTCTGTGTTTCATTTATTTAGCTTTGGTATTGGCTGGTGGACATGCAAATGGCATGGCTGTTCAGGGTTCACAATCAGATGGCGAATCGAACAACACGACTGTTAGTCTATCCTTCCCTGTCTCATATTATTTCTCTCTTCCAATACATACCTAACCAACTTGTGCTACCTCAGATATTTGTTGGTGGCCTTGATTCTGATGTTAGTGACGAAGATCTCAGGCAACCTTTCTCTAAATTTGGTGAGATTGTCTCTGTGAAAATCCCGATTGGAAAAGGATGTGGATTTGTGCAATTTGCCAACAGGTATTGTTAAACATGCAGCTGCCATGCTTATCTTATCTTTAAAGAATTAGAGGTTACAAATTGAGAAGGTTACTCTGGCCCAAGTTGGATTGACCCGTGAAGTAGCAGTCAGTTTTGGCTTGCTATAG

mRNA sequence

TCTTTCCTTTCTTTTTCCATTCAGGTTTTGAAATCTGTTTTATAATTTTTTTTTTTAATTTTTGTAAAGTTACCGGCGGAGATCCACCATCCACCACCGTTGCCACCACCGTTGCCACCACCGCCTTCTCTCTCTCTCTCCCATTATATTATTTTATTATTTTATTGTAACCTATCATTCACAATAAAACCTCTTTCTCATTCCCAATCTCCTCCTCTTTCTCTCCTTCTTTCTTTCTCTCTCCTTCAACAGCATCACTCTCTCTCTCTCTCCAACCTGGTCTTACTCCTTTGCATCCAACCGGAGCCGTCGTTTCTCGCTTAATCTCGTCGTCGGAGAGAGAAGGAAGAAGGAGACGGAGACGGAGAAGGAGACGTATACGTATACGGACGGATACGGAGACTCTTTGAAGATCATGGCCCAGCCGTCCAACGGAGCTGATCTCAATCCCCAGGCCCCCCACCCCCACCAACAATGGTTTCAACAACAACAACAGTATCAACAGCAATGGATGGCGATGCAGTATCCCGCAGCCGCCATGGCCATGATGCATCAACAACAGATGATGATGTATCCTCCTCAGCATTACATGACGTATTCTCACCTTCCTTATCAACAGCAGCCGCCGCCGTTGCAGCAGCAGCAGCAACAGCAAGCTCAGTCGCAGCGACCTCGCAGACAGGGGTCCACGGACGAGGTTAAGACGCTTTGGATTGGTGATCTTCAGCCCTGGATGGACGAGACCTATCTCCACAATTGTTTCGCTCACATCGGCGAGGTTTTCTCTGTTAAGGTTATATGCAATAAGCAAACTGGTCAATCTGAGGGCTATGGATTTGTTGAGTTCTATTCGCATGCAACAGCTGATAAGGTATTGCAGAGTTATAATGGAGCTATAATGCCTAACACAGATCTGCCTTTTCGTCTCAATTGGGCAACCTTTAGTGGAAGTGATAGGCGACCGGACACTGGGTCTGACCTATCTATATTTGTTGGTGATTTGGCTGCTGATGTAACTGATGCTATGCTGCAAGAAACTTTTTCTAGTAAATACACATCTGTTAAGGGAGCCAAGGTTGTTATTGATTCAAATTCAGGTCGTTCAAAAGGTTACGGATTTGTCAGGTTTGGTGATGAAAGTGAAAGGACAAGGGCTGTGACTGAAATGAATGGGATATATTGTTCAAGTAGACCCATGCGCATTGGTGTTGCAACACCAAAGAAAGCATCTGGATATCAACAAGGTTATTCATCACAAGCTTTGGTATTGGCTGGTGGACATGCAAATGGCATGGCTGTTCAGGGTTCACAATCAGATGGCGAATCGAACAACACGACTAGGTTACAAATTGAGAAGGTTACTCTGGCCCAAGTTGGATTGACCCGTGAAGTAGCAGTCAGTTTTGGCTTGCTATAG

Coding sequence (CDS)

ATGGCCCAGCCGTCCAACGGAGCTGATCTCAATCCCCAGGCCCCCCACCCCCACCAACAATGGTTTCAACAACAACAACAGTATCAACAGCAATGGATGGCGATGCAGTATCCCGCAGCCGCCATGGCCATGATGCATCAACAACAGATGATGATGTATCCTCCTCAGCATTACATGACGTATTCTCACCTTCCTTATCAACAGCAGCCGCCGCCGTTGCAGCAGCAGCAGCAACAGCAAGCTCAGTCGCAGCGACCTCGCAGACAGGGGTCCACGGACGAGGTTAAGACGCTTTGGATTGGTGATCTTCAGCCCTGGATGGACGAGACCTATCTCCACAATTGTTTCGCTCACATCGGCGAGGTTTTCTCTGTTAAGGTTATATGCAATAAGCAAACTGGTCAATCTGAGGGCTATGGATTTGTTGAGTTCTATTCGCATGCAACAGCTGATAAGGTATTGCAGAGTTATAATGGAGCTATAATGCCTAACACAGATCTGCCTTTTCGTCTCAATTGGGCAACCTTTAGTGGAAGTGATAGGCGACCGGACACTGGGTCTGACCTATCTATATTTGTTGGTGATTTGGCTGCTGATGTAACTGATGCTATGCTGCAAGAAACTTTTTCTAGTAAATACACATCTGTTAAGGGAGCCAAGGTTGTTATTGATTCAAATTCAGGTCGTTCAAAAGGTTACGGATTTGTCAGGTTTGGTGATGAAAGTGAAAGGACAAGGGCTGTGACTGAAATGAATGGGATATATTGTTCAAGTAGACCCATGCGCATTGGTGTTGCAACACCAAAGAAAGCATCTGGATATCAACAAGGTTATTCATCACAAGCTTTGGTATTGGCTGGTGGACATGCAAATGGCATGGCTGTTCAGGGTTCACAATCAGATGGCGAATCGAACAACACGACTAGGTTACAAATTGAGAAGGTTACTCTGGCCCAAGTTGGATTGACCCGTGAAGTAGCAGTCAGTTTTGGCTTGCTATAG

Protein sequence

MAQPSNGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMTYSHLPYQQQPPPLQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLHNCFAHIGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQSYNGAIMPNTDLPFRLNWATFSGSDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGDESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQSDGESNNTTRLQIEKVTLAQVGLTREVAVSFGLL

Homology

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BLAST of Cp4.1LG16g02040 vs. ExPASy Swiss-Prot
Match: Q9LEB3 (Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia OX=4092 GN=RBP47 PE=1 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 5.6e-101
Identity = 202/310 (65.16%), Postives = 242/310 (78.06%), Query Frame = 0


Query: 6   NGADLNPQAPHPHQQWFQQQ------QQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYM 65
           NG D+N Q     QQ  QQQ      QQYQQQWMAMQYPAAAMAM   QQ MMY  Q   
Sbjct: 2   NGGDMNQQQQQQQQQHQQQQQQWLAMQQYQQQWMAMQYPAAAMAM---QQQMMYGQQ--- 61

Query: 66  TYSHLPYQQQPPPLQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLHNCFAHI 125
              ++PY Q     Q QQQQ+ Q    + Q S+++ KT+WIGDLQ WMDE+YLH+CF+  
Sbjct: 62  ---YMPYYQ-----QHQQQQKMQQSPTQIQSSSEDNKTIWIGDLQQWMDESYLHSCFSQA 121

Query: 126 GEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQSYNGAIMPNTDLPFRLNWATFSGS 185
           GEV SVK+I NKQTGQSE YGFVEF +HA A+KVLQSYNG +MPNT+ PFRLNWA FS  
Sbjct: 122 GEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTG 181

Query: 186 DRRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFG 245
           ++R +TGSD SIFVGDLA+DVTD ML++TF+S+Y S+KGAKVV+D+N+G SKGYGFVRFG
Sbjct: 182 EKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFG 241

Query: 246 DESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHA-NGMAVQGS 305
           DESER+RA+TEMNG+YCSSR MRIGVATPKK S ++Q YSSQA++L+GG+A NG A  GS
Sbjct: 242 DESERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHEQ-YSSQAVILSGGYASNGAATHGS 296

Query: 306 QSDGESNNTT 309
           QSDG+S+NTT
Sbjct: 302 QSDGDSSNTT 296

[Close]

BLAST of Cp4.1LG16g02040 vs. ExPASy Swiss-Prot
Match: Q0WW84 (Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana OX=3702 GN=RBP47B PE=1 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 9.0e-99
Identity = 206/323 (63.78%), Postives = 243/323 (75.23%), Query Frame = 0


Query: 3   QPSNGADL----------NPQAPHPHQQWFQQQQQYQQQWM-AMQY-PAAAMAMMHQQQM 62
           Q +NG+D           N Q P P QQW QQQQQ QQQWM AMQY PAAAM MM QQQM
Sbjct: 2   QTTNGSDSTLATSGATPPNQQTPPPPQQW-QQQQQQQQQWMAAMQYPPAAAMMMMQQQQM 61

Query: 63  MMYPPQHYMTYSHLPYQQQPPPLQQ---QQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWM 122
           +MYP Q Y+ Y+  PYQQ  P L Q    QQ Q Q  +   +GS D+VKTLW+GDL  WM
Sbjct: 62  LMYPHQ-YVPYNQGPYQQHHPQLHQYGSYQQHQHQQHKAIDRGSGDDVKTLWVGDLLHWM 121

Query: 123 DETYLHNCFAHIGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQSYNGAIMPNTDL 182
           DETYLH+CF+H GEV SVKVI NK T QSEGYGFVEF S A A++VLQ+Y+G++MPN+D 
Sbjct: 122 DETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQ 181

Query: 183 PFRLNWATFS-GSDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSN 242
           PFR+NWA+FS G  R  + G DLS+FVGDL+ DVTD +L ETFS +Y SVK AKVVIDSN
Sbjct: 182 PFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSN 241

Query: 243 SGRSKGYGFVRFGDESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLA 302
           +GRSKGYGFVRFGDE+ER+RA+TEMNG YCS+R MR+G+ATPK+A   QQ +SSQA++LA
Sbjct: 242 TGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILA 301

Query: 303 GGH-ANGMAVQGSQSDGESNNTT 309
           GGH +NG    GSQSDGES N T
Sbjct: 302 GGHGSNGSMGYGSQSDGESTNAT 322

[Close]

BLAST of Cp4.1LG16g02040 vs. ExPASy Swiss-Prot
Match: F4I3B3 (Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana OX=3702 GN=RBP47A PE=2 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 1.6e-95
Identity = 199/304 (65.46%), Postives = 227/304 (74.67%), Query Frame = 0


Query: 13  QAPHPHQQWFQQQQQYQQQWMA--MQYPAAAMAMMHQQQMMMYPPQHYMTYSHLPYQQQP 72
           Q+  P QQ  QQQ Q QQQWMA   QYPAAAMAMM QQQMMMYP   Y  Y+   YQQ P
Sbjct: 29  QSTPPPQQQQQQQWQQQQQWMAAMQQYPAAAMAMMQQQQMMMYPHPQYAPYNQAAYQQHP 88

Query: 73  ----PPLQQQQQQQAQSQRPRRQGS-TDEVKTLWIGDLQPWMDETYLHNCFAHIGEVFSV 132
                  QQQQQQ  QSQ+  R GS  D+VKTLW+GDL  WMDETYLH CF+H  EV SV
Sbjct: 89  QFQYAAYQQQQQQHHQSQQQPRGGSGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSV 148

Query: 133 KVICNKQTGQSEGYGFVEFYSHATADKVLQSYNGAIMPNTDLPFRLNWATFS-GSDRRPD 192
           KVI NKQT QSEGYGFVEF S + A++ LQS++G  MPN + PFRLNWA+FS G  R  +
Sbjct: 149 KVIRNKQTCQSEGYGFVEFLSRSAAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKRASE 208

Query: 193 TGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGDESER 252
            G DLSIFVGDLA DV+DA+L ETF+ +Y SVKGAKVVIDSN+GRSKGYGFVRFGDE+ER
Sbjct: 209 NGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENER 268

Query: 253 TRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQSDGES 309
           +RA+TEMNG +CSSR MR+G+ATPK+A+ Y Q   SQAL LAGGH       GS SDGES
Sbjct: 269 SRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGG----NGSMSDGES 328

[Close]

BLAST of Cp4.1LG16g02040 vs. ExPASy Swiss-Prot
Match: Q8VXZ9 (Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana OX=3702 GN=RBP47B' PE=2 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.1e-67
Identity = 125/191 (65.45%), Postives = 152/191 (79.58%), Query Frame = 0


Query: 93  DEVKTLWIGDLQPWMDETYLHNCFAHIGEVFSVKVICNKQTGQSEGYGFVEFYSHATADK 152
           +EV+TLWIGDLQ W+DE YL +CF+  GE+ SVKVI NK TGQ EGYGF+EF SHA A++
Sbjct: 21  EEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAER 80

Query: 153 VLQSYNGAIMPNTDLPFRLNWATFSGSDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSK 212
            LQ+YNG  MP T+L FRLNWA+F GS ++ D G D SIFVGDLA DVTD +LQETF   
Sbjct: 81  TLQTYNGTQMPGTELTFRLNWASF-GSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVH 140

Query: 213 YTSVKGAKVVIDSNSGRSKGYGFVRFGDESERTRAVTEMNGIYCSSRPMRIGVATPKKAS 272
           Y+SV+GAKVV D ++GRSKGYGFV+F +ESER RA+ EMNG+YCS+RPMRI  ATPKK  
Sbjct: 141 YSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNV 200

Query: 273 GYQQGYSSQAL 284
           G QQ Y ++A+
Sbjct: 201 GVQQQYVTKAV 210

[Close]

BLAST of Cp4.1LG16g02040 vs. ExPASy Swiss-Prot
Match: Q9SX80 (Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana OX=3702 GN=RBP47C' PE=2 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 5.3e-67
Identity = 160/306 (52.29%), Postives = 191/306 (62.42%), Query Frame = 0


Query: 6   NGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMTYSHLP 65
           N    +P  P PH             W  M+YP   M        MMY P   M +S  P
Sbjct: 39  NQPKTSPTPPPPH-------------W--MRYPPVLM------PQMMYAPPPPMPFS--P 98

Query: 66  YQQQPPPLQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLHNCF--AHIGEVF 125
           Y Q P       Q +    +    G   E KT+W+GDLQ WMDE YL++ F  A   E+ 
Sbjct: 99  YHQYPNHHHFHHQSRGNKHQNAFNG---ENKTIWVGDLQNWMDEAYLNSAFTSAEEREIV 158

Query: 126 SVKVICNKQTGQSEGYGFVEFYSHATADKVLQSYNGAIMPNTDLPFRLNWATFS-GSDRR 185
           S+KVI NK  G SEGYGFVEF SH  ADKVLQ +NGA MPNTD PFRLNWA+FS G  R 
Sbjct: 159 SLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRL 218

Query: 186 PDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGDES 245
            + G DLSIFVGDLA DV+DA+L ETFS KY SVK AKVV+D+N+GRSKGYGFVRFGDE+
Sbjct: 219 ENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDEN 278

Query: 246 ERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQSDG 305
           ERT+A+TEMNG+ CSSR MRIG ATP+K +GYQQ          GG+    A   ++S+G
Sbjct: 279 ERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQ---------QGGYMPSGAF--TRSEG 307

Query: 306 ESNNTT 309
           ++ NTT
Sbjct: 339 DTINTT 307

[Close]

BLAST of Cp4.1LG16g02040 vs. NCBI nr
Match: XP_023512881.1 (polyadenylate-binding protein RBP47B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 607 bits (1565), Expect = 1.10e-217
Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 0


Query: 1   MAQPSNGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMT 60
           MAQPSNGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMT
Sbjct: 1   MAQPSNGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMT 60

Query: 61  YSHLPYQQQPPPLQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLHNCFAHIG 120
           YSHLPYQQQPPPLQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLHNCFAHIG
Sbjct: 61  YSHLPYQQQPPPLQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLHNCFAHIG 120

Query: 121 EVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQSYNGAIMPNTDLPFRLNWATFSGSD 180
           EVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQSYNGAIMPNTDLPFRLNWATFSGSD
Sbjct: 121 EVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQSYNGAIMPNTDLPFRLNWATFSGSD 180

Query: 181 RRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGD 240
           RRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGD
Sbjct: 181 RRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGD 240

Query: 241 ESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQS 300
           ESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQS
Sbjct: 241 ESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQS 300

Query: 301 DGESNNTT 308
           DGESNNTT
Sbjct: 301 DGESNNTT 308

[Close]

BLAST of Cp4.1LG16g02040 vs. NCBI nr
Match: XP_022986538.1 (polyadenylate-binding protein RBP47-like [Cucurbita maxima])

HSP 1 Score: 606 bits (1562), Expect = 5.30e-216
Identity = 307/308 (99.68%), Postives = 308/308 (100.00%), Query Frame = 0


Query: 1   MAQPSNGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMT 60
           MAQPSNGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMT
Sbjct: 1   MAQPSNGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMT 60

Query: 61  YSHLPYQQQPPPLQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLHNCFAHIG 120
           YSHLPYQQQPPPLQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLHNCFAHIG
Sbjct: 61  YSHLPYQQQPPPLQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLHNCFAHIG 120

Query: 121 EVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQSYNGAIMPNTDLPFRLNWATFSGSD 180
           EVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQ+YNGAIMPNTDLPFRLNWATFSGSD
Sbjct: 121 EVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTDLPFRLNWATFSGSD 180

Query: 181 RRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGD 240
           RRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGD
Sbjct: 181 RRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGD 240

Query: 241 ESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQS 300
           ESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQS
Sbjct: 241 ESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQS 300

Query: 301 DGESNNTT 308
           DGESNNTT
Sbjct: 301 DGESNNTT 308

[Close]

BLAST of Cp4.1LG16g02040 vs. NCBI nr
Match: XP_022943942.1 (polyadenylate-binding protein RBP47-like [Cucurbita moschata] >KAG6571157.1 Polyadenylate-binding protein RBP47, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 600 bits (1547), Expect = 9.46e-214
Identity = 306/308 (99.35%), Postives = 307/308 (99.68%), Query Frame = 0


Query: 1   MAQPSNGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMT 60
           MAQPSNGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMT
Sbjct: 1   MAQPSNGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMT 60

Query: 61  YSHLPYQQQPPPLQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLHNCFAHIG 120
           YSHLPYQQQPPPLQQQQQQ AQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLHNCFAHIG
Sbjct: 61  YSHLPYQQQPPPLQQQQQQ-AQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLHNCFAHIG 120

Query: 121 EVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQSYNGAIMPNTDLPFRLNWATFSGSD 180
           EVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQ+YNGAIMPNTDLPFRLNWATFSGSD
Sbjct: 121 EVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTDLPFRLNWATFSGSD 180

Query: 181 RRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGD 240
           RRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGD
Sbjct: 181 RRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGD 240

Query: 241 ESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQS 300
           ESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQS
Sbjct: 241 ESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQS 300

Query: 301 DGESNNTT 308
           DGESNNTT
Sbjct: 301 DGESNNTT 307

[Close]

BLAST of Cp4.1LG16g02040 vs. NCBI nr
Match: KAG7010966.1 (Polyadenylate-binding protein RBP47, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 600 bits (1547), Expect = 2.93e-212
Identity = 306/308 (99.35%), Postives = 307/308 (99.68%), Query Frame = 0


Query: 1   MAQPSNGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMT 60
           MAQPSNGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMT
Sbjct: 67  MAQPSNGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMT 126

Query: 61  YSHLPYQQQPPPLQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLHNCFAHIG 120
           YSHLPYQQQPPPLQQQQQQ AQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLHNCFAHIG
Sbjct: 127 YSHLPYQQQPPPLQQQQQQ-AQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLHNCFAHIG 186

Query: 121 EVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQSYNGAIMPNTDLPFRLNWATFSGSD 180
           EVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQ+YNGAIMPNTDLPFRLNWATFSGSD
Sbjct: 187 EVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTDLPFRLNWATFSGSD 246

Query: 181 RRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGD 240
           RRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGD
Sbjct: 247 RRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGD 306

Query: 241 ESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQS 300
           ESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQS
Sbjct: 307 ESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQS 366

Query: 301 DGESNNTT 308
           DGESNNTT
Sbjct: 367 DGESNNTT 373

[Close]

BLAST of Cp4.1LG16g02040 vs. NCBI nr
Match: XP_023007482.1 (polyadenylate-binding protein RBP47-like [Cucurbita maxima])

HSP 1 Score: 559 bits (1441), Expect = 2.82e-197
Identity = 287/316 (90.82%), Postives = 299/316 (94.62%), Query Frame = 0


Query: 1   MAQPSNGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMT 60
           MAQPSNGADLNPQAPHPH QW+QQQ+QYQQQWMA+QYPAAAMAMM QQQMMMYPPQHY+ 
Sbjct: 1   MAQPSNGADLNPQAPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVA 60

Query: 61  YSHLPYQQQ------PPPLQQQQQQQAQ--SQRPRRQGSTDEVKTLWIGDLQPWMDETYL 120
           YSH PYQQQ      PPP QQQQQQQ Q  SQRPRRQGSTD+VKTLWIGDLQ WMDETYL
Sbjct: 61  YSHHPYQQQQHPQQQPPPSQQQQQQQQQPQSQRPRRQGSTDDVKTLWIGDLQAWMDETYL 120

Query: 121 HNCFAHIGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQSYNGAIMPNTDLPFRLN 180
           HNCFAH GEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQ+YNGA+MPNTDLPFRLN
Sbjct: 121 HNCFAHTGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAMMPNTDLPFRLN 180

Query: 181 WATFSGSDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKG 240
           WATFSG+DRRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKG
Sbjct: 181 WATFSGNDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKG 240

Query: 241 YGFVRFGDESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANG 300
           YGFVRFGDE+E++RA+TEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANG
Sbjct: 241 YGFVRFGDENEKSRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANG 300

Query: 301 MAVQGSQSDGESNNTT 308
           MAVQG QSDGESNNTT
Sbjct: 301 MAVQGPQSDGESNNTT 316

[Close]

BLAST of Cp4.1LG16g02040 vs. ExPASy TrEMBL
Match: A0A6J1JGT7 (polyadenylate-binding protein RBP47-like OS=Cucurbita maxima OX=3661 GN=LOC111484248 PE=4 SV=1)

HSP 1 Score: 606 bits (1562), Expect = 2.56e-216
Identity = 307/308 (99.68%), Postives = 308/308 (100.00%), Query Frame = 0


Query: 1   MAQPSNGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMT 60
           MAQPSNGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMT
Sbjct: 1   MAQPSNGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMT 60

Query: 61  YSHLPYQQQPPPLQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLHNCFAHIG 120
           YSHLPYQQQPPPLQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLHNCFAHIG
Sbjct: 61  YSHLPYQQQPPPLQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLHNCFAHIG 120

Query: 121 EVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQSYNGAIMPNTDLPFRLNWATFSGSD 180
           EVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQ+YNGAIMPNTDLPFRLNWATFSGSD
Sbjct: 121 EVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTDLPFRLNWATFSGSD 180

Query: 181 RRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGD 240
           RRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGD
Sbjct: 181 RRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGD 240

Query: 241 ESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQS 300
           ESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQS
Sbjct: 241 ESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQS 300

Query: 301 DGESNNTT 308
           DGESNNTT
Sbjct: 301 DGESNNTT 308

[Close]

BLAST of Cp4.1LG16g02040 vs. ExPASy TrEMBL
Match: A0A6J1FUF1 (polyadenylate-binding protein RBP47-like OS=Cucurbita moschata OX=3662 GN=LOC111448515 PE=4 SV=1)

HSP 1 Score: 600 bits (1547), Expect = 4.58e-214
Identity = 306/308 (99.35%), Postives = 307/308 (99.68%), Query Frame = 0


Query: 1   MAQPSNGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMT 60
           MAQPSNGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMT
Sbjct: 1   MAQPSNGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMT 60

Query: 61  YSHLPYQQQPPPLQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLHNCFAHIG 120
           YSHLPYQQQPPPLQQQQQQ AQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLHNCFAHIG
Sbjct: 61  YSHLPYQQQPPPLQQQQQQ-AQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLHNCFAHIG 120

Query: 121 EVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQSYNGAIMPNTDLPFRLNWATFSGSD 180
           EVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQ+YNGAIMPNTDLPFRLNWATFSGSD
Sbjct: 121 EVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTDLPFRLNWATFSGSD 180

Query: 181 RRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGD 240
           RRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGD
Sbjct: 181 RRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGD 240

Query: 241 ESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQS 300
           ESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQS
Sbjct: 241 ESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQS 300

Query: 301 DGESNNTT 308
           DGESNNTT
Sbjct: 301 DGESNNTT 307

[Close]

BLAST of Cp4.1LG16g02040 vs. ExPASy TrEMBL
Match: A0A6J1KYU5 (polyadenylate-binding protein RBP47-like OS=Cucurbita maxima OX=3661 GN=LOC111499959 PE=4 SV=1)

HSP 1 Score: 559 bits (1441), Expect = 1.36e-197
Identity = 287/316 (90.82%), Postives = 299/316 (94.62%), Query Frame = 0


Query: 1   MAQPSNGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMT 60
           MAQPSNGADLNPQAPHPH QW+QQQ+QYQQQWMA+QYPAAAMAMM QQQMMMYPPQHY+ 
Sbjct: 1   MAQPSNGADLNPQAPHPHHQWYQQQRQYQQQWMAVQYPAAAMAMMQQQQMMMYPPQHYVA 60

Query: 61  YSHLPYQQQ------PPPLQQQQQQQAQ--SQRPRRQGSTDEVKTLWIGDLQPWMDETYL 120
           YSH PYQQQ      PPP QQQQQQQ Q  SQRPRRQGSTD+VKTLWIGDLQ WMDETYL
Sbjct: 61  YSHHPYQQQQHPQQQPPPSQQQQQQQQQPQSQRPRRQGSTDDVKTLWIGDLQAWMDETYL 120

Query: 121 HNCFAHIGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQSYNGAIMPNTDLPFRLN 180
           HNCFAH GEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQ+YNGA+MPNTDLPFRLN
Sbjct: 121 HNCFAHTGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAMMPNTDLPFRLN 180

Query: 181 WATFSGSDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKG 240
           WATFSG+DRRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKG
Sbjct: 181 WATFSGNDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKG 240

Query: 241 YGFVRFGDESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANG 300
           YGFVRFGDE+E++RA+TEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANG
Sbjct: 241 YGFVRFGDENEKSRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANG 300

Query: 301 MAVQGSQSDGESNNTT 308
           MAVQG QSDGESNNTT
Sbjct: 301 MAVQGPQSDGESNNTT 316

[Close]

BLAST of Cp4.1LG16g02040 vs. ExPASy TrEMBL
Match: A0A5D3CNT4 (Polyadenylate-binding protein RBP47 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G00410 PE=4 SV=1)

HSP 1 Score: 551 bits (1421), Expect = 1.41e-195
Identity = 282/312 (90.38%), Postives = 292/312 (93.59%), Query Frame = 0


Query: 1   MAQPSNGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMT 60
           MAQPSNGADLNPQAPHPH QWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYM 
Sbjct: 1   MAQPSNGADLNPQAPHPHHQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMA 60

Query: 61  YSHLPYQQQPP----PLQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLHNCF 120
           YSH PYQQQ      P  QQQQQ AQSQRPRRQGSTDEVKTLWIGDLQPWMDETYL+NCF
Sbjct: 61  YSHHPYQQQQQQQQQPSSQQQQQHAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLNNCF 120

Query: 121 AHIGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQSYNGAIMPNTDLPFRLNWATF 180
           AH GEV SVKVICNKQTGQSEGYGFVEF+SH TA+KVLQ+YNG IMPNT+LPFRLNWATF
Sbjct: 121 AHTGEVSSVKVICNKQTGQSEGYGFVEFFSHTTAEKVLQNYNGTIMPNTELPFRLNWATF 180

Query: 181 SGSDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFV 240
           S +DRRPDTGSDLSIFVGDLAADVTDAMLQETFSS+YTSVKGAKVVIDSNSGRSKGYGFV
Sbjct: 181 SANDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVVIDSNSGRSKGYGFV 240

Query: 241 RFGDESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQ 300
           RFGDE+ERTRA+ EMNGIYCSSRPMRIGVATPKKASGYQQGY+SQALVLAGGH NGMAVQ
Sbjct: 241 RFGDENERTRAMAEMNGIYCSSRPMRIGVATPKKASGYQQGYASQALVLAGGHPNGMAVQ 300

Query: 301 GSQSDGESNNTT 308
           GSQSD ESNNTT
Sbjct: 301 GSQSDSESNNTT 312

[Close]

BLAST of Cp4.1LG16g02040 vs. ExPASy TrEMBL
Match: A0A1S3C9N4 (polyadenylate-binding protein RBP47 OS=Cucumis melo OX=3656 GN=LOC103498402 PE=4 SV=1)

HSP 1 Score: 551 bits (1421), Expect = 9.81e-195
Identity = 282/312 (90.38%), Postives = 292/312 (93.59%), Query Frame = 0


Query: 1   MAQPSNGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMT 60
           MAQPSNGADLNPQAPHPH QWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYM 
Sbjct: 1   MAQPSNGADLNPQAPHPHHQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMA 60

Query: 61  YSHLPYQQQPP----PLQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLHNCF 120
           YSH PYQQQ      P  QQQQQ AQSQRPRRQGSTDEVKTLWIGDLQPWMDETYL+NCF
Sbjct: 61  YSHHPYQQQQQQQQQPSSQQQQQHAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLNNCF 120

Query: 121 AHIGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQSYNGAIMPNTDLPFRLNWATF 180
           AH GEV SVKVICNKQTGQSEGYGFVEF+SH TA+KVLQ+YNG IMPNT+LPFRLNWATF
Sbjct: 121 AHTGEVSSVKVICNKQTGQSEGYGFVEFFSHTTAEKVLQNYNGTIMPNTELPFRLNWATF 180

Query: 181 SGSDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFV 240
           S +DRRPDTGSDLSIFVGDLAADVTDAMLQETFSS+YTSVKGAKVVIDSNSGRSKGYGFV
Sbjct: 181 SANDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVVIDSNSGRSKGYGFV 240

Query: 241 RFGDESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQ 300
           RFGDE+ERTRA+ EMNGIYCSSRPMRIGVATPKKASGYQQGY+SQALVLAGGH NGMAVQ
Sbjct: 241 RFGDENERTRAMAEMNGIYCSSRPMRIGVATPKKASGYQQGYASQALVLAGGHPNGMAVQ 300

Query: 301 GSQSDGESNNTT 308
           GSQSD ESNNTT
Sbjct: 301 GSQSDSESNNTT 312

[Close]

BLAST of Cp4.1LG16g02040 vs. TAIR 10
Match: AT3G19130.1 (RNA-binding protein 47B )

HSP 1 Score: 361.7 bits (927), Expect = 6.4e-100
Identity = 206/323 (63.78%), Postives = 243/323 (75.23%), Query Frame = 0


Query: 3   QPSNGADL----------NPQAPHPHQQWFQQQQQYQQQWM-AMQY-PAAAMAMMHQQQM 62
           Q +NG+D           N Q P P QQW QQQQQ QQQWM AMQY PAAAM MM QQQM
Sbjct: 2   QTTNGSDSTLATSGATPPNQQTPPPPQQW-QQQQQQQQQWMAAMQYPPAAAMMMMQQQQM 61

Query: 63  MMYPPQHYMTYSHLPYQQQPPPLQQ---QQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWM 122
           +MYP Q Y+ Y+  PYQQ  P L Q    QQ Q Q  +   +GS D+VKTLW+GDL  WM
Sbjct: 62  LMYPHQ-YVPYNQGPYQQHHPQLHQYGSYQQHQHQQHKAIDRGSGDDVKTLWVGDLLHWM 121

Query: 123 DETYLHNCFAHIGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQSYNGAIMPNTDL 182
           DETYLH+CF+H GEV SVKVI NK T QSEGYGFVEF S A A++VLQ+Y+G++MPN+D 
Sbjct: 122 DETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQ 181

Query: 183 PFRLNWATFS-GSDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSN 242
           PFR+NWA+FS G  R  + G DLS+FVGDL+ DVTD +L ETFS +Y SVK AKVVIDSN
Sbjct: 182 PFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSN 241

Query: 243 SGRSKGYGFVRFGDESERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLA 302
           +GRSKGYGFVRFGDE+ER+RA+TEMNG YCS+R MR+G+ATPK+A   QQ +SSQA++LA
Sbjct: 242 TGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILA 301

Query: 303 GGH-ANGMAVQGSQSDGESNNTT 309
           GGH +NG    GSQSDGES N T
Sbjct: 302 GGHGSNGSMGYGSQSDGESTNAT 322

[Close]

BLAST of Cp4.1LG16g02040 vs. TAIR 10
Match: AT1G49600.1 (RNA-binding protein 47A )

HSP 1 Score: 350.9 bits (899), Expect = 1.1e-96
Identity = 199/304 (65.46%), Postives = 227/304 (74.67%), Query Frame = 0


Query: 13  QAPHPHQQWFQQQQQYQQQWMA--MQYPAAAMAMMHQQQMMMYPPQHYMTYSHLPYQQQP 72
           Q+  P QQ  QQQ Q QQQWMA   QYPAAAMAMM QQQMMMYP   Y  Y+   YQQ P
Sbjct: 29  QSTPPPQQQQQQQWQQQQQWMAAMQQYPAAAMAMMQQQQMMMYPHPQYAPYNQAAYQQHP 88

Query: 73  ----PPLQQQQQQQAQSQRPRRQGS-TDEVKTLWIGDLQPWMDETYLHNCFAHIGEVFSV 132
                  QQQQQQ  QSQ+  R GS  D+VKTLW+GDL  WMDETYLH CF+H  EV SV
Sbjct: 89  QFQYAAYQQQQQQHHQSQQQPRGGSGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSV 148

Query: 133 KVICNKQTGQSEGYGFVEFYSHATADKVLQSYNGAIMPNTDLPFRLNWATFS-GSDRRPD 192
           KVI NKQT QSEGYGFVEF S + A++ LQS++G  MPN + PFRLNWA+FS G  R  +
Sbjct: 149 KVIRNKQTCQSEGYGFVEFLSRSAAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKRASE 208

Query: 193 TGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGDESER 252
            G DLSIFVGDLA DV+DA+L ETF+ +Y SVKGAKVVIDSN+GRSKGYGFVRFGDE+ER
Sbjct: 209 NGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENER 268

Query: 253 TRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQSDGES 309
           +RA+TEMNG +CSSR MR+G+ATPK+A+ Y Q   SQAL LAGGH       GS SDGES
Sbjct: 269 SRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGG----NGSMSDGES 328

[Close]

BLAST of Cp4.1LG16g02040 vs. TAIR 10
Match: AT5G19350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 258.5 bits (659), Expect = 7.6e-69
Identity = 125/191 (65.45%), Postives = 152/191 (79.58%), Query Frame = 0


Query: 93  DEVKTLWIGDLQPWMDETYLHNCFAHIGEVFSVKVICNKQTGQSEGYGFVEFYSHATADK 152
           +EV+TLWIGDLQ W+DE YL +CF+  GE+ SVKVI NK TGQ EGYGF+EF SHA A++
Sbjct: 21  EEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAER 80

Query: 153 VLQSYNGAIMPNTDLPFRLNWATFSGSDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSK 212
            LQ+YNG  MP T+L FRLNWA+F GS ++ D G D SIFVGDLA DVTD +LQETF   
Sbjct: 81  TLQTYNGTQMPGTELTFRLNWASF-GSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVH 140

Query: 213 YTSVKGAKVVIDSNSGRSKGYGFVRFGDESERTRAVTEMNGIYCSSRPMRIGVATPKKAS 272
           Y+SV+GAKVV D ++GRSKGYGFV+F +ESER RA+ EMNG+YCS+RPMRI  ATPKK  
Sbjct: 141 YSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNV 200

Query: 273 GYQQGYSSQAL 284
           G QQ Y ++A+
Sbjct: 201 GVQQQYVTKAV 210

[Close]

BLAST of Cp4.1LG16g02040 vs. TAIR 10
Match: AT5G19350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 258.1 bits (658), Expect = 9.9e-69
Identity = 125/192 (65.10%), Postives = 151/192 (78.65%), Query Frame = 0


Query: 93  DEVKTLWIGDLQPWMDETYLHNCFAHIGEVFSVKVICNKQTGQSEGYGFVEFYSHATADK 152
           +EV+TLWIGDLQ W+DE YL +CF+  GE+ SVKVI NK TGQ EGYGF+EF SHA A++
Sbjct: 21  EEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAER 80

Query: 153 VLQSYNGAIMPNTDLPFRLNWATFSGSDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSK 212
            LQ+YNG  MP T+L FRLNWA+F GS ++ D G D SIFVGDLA DVTD +LQETF   
Sbjct: 81  TLQTYNGTQMPGTELTFRLNWASF-GSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVH 140

Query: 213 YTSVKGAKVVIDSNSGRSKGYGFVRFGDESERTRAVTEMNGIYCSSRPMRIGVATPKKAS 272
           Y+SV+GAKVV D ++GRSKGYGFV+F +ESER RA+ EMNG+YCS+RPMRI  ATPKK  
Sbjct: 141 YSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNV 200

Query: 273 GYQQGYSSQALV 285
           G QQ Y ++  V
Sbjct: 201 GVQQQYVTKVTV 211

[Close]

BLAST of Cp4.1LG16g02040 vs. TAIR 10
Match: AT1G47500.1 (RNA-binding protein 47C' )

HSP 1 Score: 256.1 bits (653), Expect = 3.8e-68
Identity = 160/306 (52.29%), Postives = 191/306 (62.42%), Query Frame = 0


Query: 6   NGADLNPQAPHPHQQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMTYSHLP 65
           N    +P  P PH             W  M+YP   M        MMY P   M +S  P
Sbjct: 39  NQPKTSPTPPPPH-------------W--MRYPPVLM------PQMMYAPPPPMPFS--P 98

Query: 66  YQQQPPPLQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLHNCF--AHIGEVF 125
           Y Q P       Q +    +    G   E KT+W+GDLQ WMDE YL++ F  A   E+ 
Sbjct: 99  YHQYPNHHHFHHQSRGNKHQNAFNG---ENKTIWVGDLQNWMDEAYLNSAFTSAEEREIV 158

Query: 126 SVKVICNKQTGQSEGYGFVEFYSHATADKVLQSYNGAIMPNTDLPFRLNWATFS-GSDRR 185
           S+KVI NK  G SEGYGFVEF SH  ADKVLQ +NGA MPNTD PFRLNWA+FS G  R 
Sbjct: 159 SLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRL 218

Query: 186 PDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGDES 245
            + G DLSIFVGDLA DV+DA+L ETFS KY SVK AKVV+D+N+GRSKGYGFVRFGDE+
Sbjct: 219 ENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDEN 278

Query: 246 ERTRAVTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQSDG 305
           ERT+A+TEMNG+ CSSR MRIG ATP+K +GYQQ          GG+    A   ++S+G
Sbjct: 279 ERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQ---------QGGYMPSGAF--TRSEG 307

Query: 306 ESNNTT 309
           ++ NTT
Sbjct: 339 DTINTT 307

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g02040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LEB3	5.6e-101	65.16	Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia OX=4092 GN=RBP4...	[more]
Q0WW84	9.0e-99	63.78	Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana OX=3702 GN=RBP47B P...	[more]
F4I3B3	1.6e-95	65.46	Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana OX=3702 GN=RBP47A P...	[more]
Q8VXZ9	1.1e-67	65.45	Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana OX=3702 GN=RBP47B'...	[more]
Q9SX80	5.3e-67	52.29	Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana OX=3702 GN=RBP47C'...	[more]

BLAST of Cp4.1LG16g02040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023512881.1	1.10e-217	100.00	polyadenylate-binding protein RBP47B-like [Cucurbita pepo subsp. pepo]	[more]
XP_022986538.1	5.30e-216	99.68	polyadenylate-binding protein RBP47-like [Cucurbita maxima]	[more]
XP_022943942.1	9.46e-214	99.35	polyadenylate-binding protein RBP47-like [Cucurbita moschata] >KAG6571157.1 Poly...	[more]
KAG7010966.1	2.93e-212	99.35	Polyadenylate-binding protein RBP47, partial [Cucurbita argyrosperma subsp. argy...	[more]
XP_023007482.1	2.82e-197	90.82	polyadenylate-binding protein RBP47-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG16g02040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JGT7	2.56e-216	99.68	polyadenylate-binding protein RBP47-like OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1FUF1	4.58e-214	99.35	polyadenylate-binding protein RBP47-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1KYU5	1.36e-197	90.82	polyadenylate-binding protein RBP47-like OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A5D3CNT4	1.41e-195	90.38	Polyadenylate-binding protein RBP47 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3C9N4	9.81e-195	90.38	polyadenylate-binding protein RBP47 OS=Cucumis melo OX=3656 GN=LOC103498402 PE=4...	[more]

BLAST of Cp4.1LG16g02040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19130.1	6.4e-100	63.78	RNA-binding protein 47B	[more]
AT1G49600.1	1.1e-96	65.46	RNA-binding protein 47A	[more]
AT5G19350.1	7.6e-69	65.45	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G19350.2	9.9e-69	65.10	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G47500.1	3.8e-68	52.29	RNA-binding protein 47C'	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 97..170 e-value: 8.9E-14 score: 61.8 coord: 190..264 e-value: 6.1E-19 score: 78.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 98..166 e-value: 2.0E-13 score: 50.0 coord: 191..261 e-value: 2.5E-15 score: 56.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 189..268 score: 16.960629
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 96..176 score: 14.50465
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 180..282 e-value: 6.6E-22 score: 79.9 coord: 57..179 e-value: 3.1E-26 score: 93.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..95
None	No IPR available	PANTHER	PTHR47640	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	coord: 19..308
None	No IPR available	PANTHER	PTHR47640:SF9	POLYADENYLATE-BINDING PROTEIN RBP47B	coord: 19..308
None	No IPR available	CDD	cd12344	RRM1_SECp43_like	coord: 97..177 e-value: 1.03518E-46 score: 150.876
None	No IPR available	CDD	cd12345	RRM2_SECp43_like	coord: 188..267 e-value: 1.19344E-46 score: 150.892
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 172..282
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 59..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g02040.1	Cp4.1LG16g02040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding