Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATCAAGGCTACACACACAAGCCACTCAACTAGCAAAAGCTCACCTCCTCCAAAATGTATTACAAATTCTAAGCTCTCCTTCTTCTCTAGCCATTTCAAATAACCTCTTCAACACACAACAAATCACAGACCTCCTAACTTATAATCACCCCATTGGATCTTCTTTTCAAACCTTCCCAAGTAACATACAACCCCTACAAGAACCACTATCATGTGACGACTACGCGACAACCACTCCTACGTTAGCGTTGGAAAACGATTGCAATCGAGCGGAGTCTTTTTACGACATGAGTCAATGCCCACACTCACTTCCCGACTTGATTCCAGCTTCTCCCGAATGCTCGAAAATACCAACCGCCATAGAAAATAACTGGGTAGATATCATGGATGACGAAACTTCCAATTCTTACTGGAAACATGCGATAAAGTAAGTGAATACGAATAAAAATCACTCGTTTCATAAGTACTTTAAATTATATCAAAATTACACGATTTTTTTTTTTCTTTGAACAGCCAAACTCCTCCGCCGCCATGGTCGGTCTCG
mRNA sequence
TCATCAAGGCTACACACACAAGCCACTCAACTAGCAAAAGCTCACCTCCTCCAAAATGTATTACAAATTCTAAGCTCTCCTTCTTCTCTAGCCATTTCAAATAACCTCTTCAACACACAACAAATCACAGACCTCCTAACTTATAATCACCCCATTGGATCTTCTTTTCAAACCTTCCCAAGTAACATACAACCCCTACAAGAACCACTATCATGTGACGACTACGCGACAACCACTCCTACGTTAGCGTTGGAAAACGATTGCAATCGAGCGGAGTCTTTTTACGACATGAGTCAATGCCCACACTCACTTCCCGACTTGATTCCAGCTTCTCCCGAATGCTCGAAAATACCAACCGCCATAGAAAATAACTGGGTAGATATCATGGATGACGAAACTTCCAATTCTTACTGGAAACATGCGATAAACCAAACTCCTCCGCCGCCATGGTCGGTCTCG
Coding sequence (CDS)
TCATCAAGGCTACACACACAAGCCACTCAACTAGCAAAAGCTCACCTCCTCCAAAATGTATTACAAATTCTAAGCTCTCCTTCTTCTCTAGCCATTTCAAATAACCTCTTCAACACACAACAAATCACAGACCTCCTAACTTATAATCACCCCATTGGATCTTCTTTTCAAACCTTCCCAAGTAACATACAACCCCTACAAGAACCACTATCATGTGACGACTACGCGACAACCACTCCTACGTTAGCGTTGGAAAACGATTGCAATCGAGCGGAGTCTTTTTACGACATGAGTCAATGCCCACACTCACTTCCCGACTTGATTCCAGCTTCTCCCGAATGCTCGAAAATACCAACCGCCATAGAAAATAACTGGGTAGATATCATGGATGACGAAACTTCCAATTCTTACTGGAAACATGCGATAAACCAAACTCCTCCGCCGCCATGGTCGGTCTCG
Protein sequence
SSRLHTQATQLAKAHLLQNVLQILSSPSSLAISNNLFNTQQITDLLTYNHPIGSSFQTFPSNIQPLQEPLSCDDYATTTPTLALENDCNRAESFYDMSQCPHSLPDLIPASPECSKIPTAIENNWVDIMDDETSNSYWKHAINQTPPPPWSVS
Homology
BLAST of Cp4.1LG16g01920 vs. NCBI nr
Match:
XP_023513135.1 (transcription factor MYB41-like [Cucurbita pepo subsp. pepo] >XP_023521997.1 transcription factor MYB41-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 318 bits (815), Expect = 2.21e-107
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0
Query: 1 SSRLHTQATQLAKAHLLQNVLQILSSPSSLAISNNLFNTQQITDLLTYNHPIGSSFQTFP 60
SSRLHTQATQLAKAHLLQNVLQILSSPSSLAISNNLFNTQQITDLLTYNHPIGSSFQTFP
Sbjct: 155 SSRLHTQATQLAKAHLLQNVLQILSSPSSLAISNNLFNTQQITDLLTYNHPIGSSFQTFP 214
Query: 61 SNIQPLQEPLSCDDYATTTPTLALENDCNRAESFYDMSQCPHSLPDLIPASPECSKIPTA 120
SNIQPLQEPLSCDDYATTTPTLALENDCNRAESFYDMSQCPHSLPDLIPASPECSKIPTA
Sbjct: 215 SNIQPLQEPLSCDDYATTTPTLALENDCNRAESFYDMSQCPHSLPDLIPASPECSKIPTA 274
Query: 121 IENNWVDIMDDETSNSYWKHAINQTPPPPWSVS 153
IENNWVDIMDDETSNSYWKHAINQTPPPPWSVS
Sbjct: 275 IENNWVDIMDDETSNSYWKHAINQTPPPPWSVS 307
BLAST of Cp4.1LG16g01920 vs. NCBI nr
Match:
XP_022943689.1 (transcription factor MYB41-like [Cucurbita moschata])
HSP 1 Score: 297 bits (760), Expect = 4.91e-99
Identity = 145/153 (94.77%), Postives = 150/153 (98.04%), Query Frame = 0
Query: 1 SSRLHTQATQLAKAHLLQNVLQILSSPSSLAISNNLFNTQQITDLLTYNHPIGSSFQTFP 60
SSRLHTQATQLAKAHLLQNVLQILSSPSSLAISNNLFNTQQIT+L TYNHPIGSSFQTFP
Sbjct: 155 SSRLHTQATQLAKAHLLQNVLQILSSPSSLAISNNLFNTQQITNL-TYNHPIGSSFQTFP 214
Query: 61 SNIQPLQEPLSCDDYATTTPTLALENDCNRAESFYDMSQCPHSLPDLIPASPECSKIPTA 120
SNIQPLQEPLSCDDYATT PTLALENDCNRAESFYDMSQCP+SLPDLIPASPECSKIPTA
Sbjct: 215 SNIQPLQEPLSCDDYATTAPTLALENDCNRAESFYDMSQCPNSLPDLIPASPECSKIPTA 274
Query: 121 IENNWVDIMDDETSNSYWKHAINQTPPPPWSVS 153
IENNW DIMDDE+S+SYWK+AINQTPPPPWSVS
Sbjct: 275 IENNWGDIMDDESSSSYWKYAINQTPPPPWSVS 306
BLAST of Cp4.1LG16g01920 vs. NCBI nr
Match:
KAG6571174.1 (Transcription factor MYB92, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 272 bits (696), Expect = 1.40e-89
Identity = 134/142 (94.37%), Postives = 139/142 (97.89%), Query Frame = 0
Query: 1 SSRLHTQATQLAKAHLLQNVLQILSSPSSLAISNNLFNTQQITDLLTYNHPIGSSFQTFP 60
SSRLHTQATQLAKAHLLQNVLQILSSPSSLAISNNLFNTQQIT+L TYNHPIGSSFQTFP
Sbjct: 146 SSRLHTQATQLAKAHLLQNVLQILSSPSSLAISNNLFNTQQITNL-TYNHPIGSSFQTFP 205
Query: 61 SNIQPLQEPLSCDDYATTTPTLALENDCNRAESFYDMSQCPHSLPDLIPASPECSKIPTA 120
SNIQPLQEPLSCDDYATT PTLALENDCNRAESFYDMSQCP+SLPDLIPASPECSKIPTA
Sbjct: 206 SNIQPLQEPLSCDDYATTAPTLALENDCNRAESFYDMSQCPNSLPDLIPASPECSKIPTA 265
Query: 121 IENNWVDIMDDETSNSYWKHAI 142
IENNW DIMDDE+S+SYWK+AI
Sbjct: 266 IENNWGDIMDDESSSSYWKYAI 286
BLAST of Cp4.1LG16g01920 vs. NCBI nr
Match:
XP_022986579.1 (transcription factor MYB102-like [Cucurbita maxima])
HSP 1 Score: 270 bits (690), Expect = 1.68e-88
Identity = 136/153 (88.89%), Postives = 139/153 (90.85%), Query Frame = 0
Query: 1 SSRLHTQATQLAKAHLLQNVLQILSSPSSLAISNNLFNTQQITDLLTYNHPIGSSFQTFP 60
S RLHTQA HLLQNVLQIL+SPSSLAISNNLFNTQQIT+L TYNHPIGS FQTFP
Sbjct: 155 SLRLHTQA------HLLQNVLQILNSPSSLAISNNLFNTQQITNL-TYNHPIGSFFQTFP 214
Query: 61 SNIQPLQEPLSCDDYATTTPTLALENDCNRAESFYDMSQCPHSLPDLIPASPECSKIPTA 120
SNIQPLQEPLSCDDYATT P L LENDCNRAESFYDMSQCP+SLPDLIPASPECSKIPTA
Sbjct: 215 SNIQPLQEPLSCDDYATTAPALGLENDCNRAESFYDMSQCPNSLPDLIPASPECSKIPTA 274
Query: 121 IENNWVDIMDDETSNSYWKHAINQTPPPPWSVS 153
IENNW DIMDDETSNSYWKHAINQTPPP WSVS
Sbjct: 275 IENNWGDIMDDETSNSYWKHAINQTPPP-WSVS 299
BLAST of Cp4.1LG16g01920 vs. NCBI nr
Match:
KAG7010979.1 (Transcription factor MYB-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 253 bits (647), Expect = 7.29e-82
Identity = 127/134 (94.78%), Postives = 130/134 (97.01%), Query Frame = 0
Query: 1 SSRLHTQATQLAKAHLLQNVLQILSSPSSLAISNNLFNTQQITDLLTYNHPIGSSFQTFP 60
SSRLHTQATQLAKAHLLQNVLQILSSPSSLAISNNLFNTQQIT+L TYNHPIGSSFQTFP
Sbjct: 155 SSRLHTQATQLAKAHLLQNVLQILSSPSSLAISNNLFNTQQITNL-TYNHPIGSSFQTFP 214
Query: 61 SNIQPLQEPLSCDDYATTTPTLALENDCNRAESFYDMSQCPHSLPDLIPASPECSKIPTA 120
SNIQPLQEPLSCDDYATT PTLALENDCNRAESFYDMSQCP+SLPDLIPASPECSKIPTA
Sbjct: 215 SNIQPLQEPLSCDDYATTAPTLALENDCNRAESFYDMSQCPNSLPDLIPASPECSKIPTA 274
Query: 121 IENNWVDIMDDETS 134
IENNW DIMD E+S
Sbjct: 275 IENNWGDIMDVESS 287
BLAST of Cp4.1LG16g01920 vs. ExPASy TrEMBL
Match:
A0A6J1FV33 (transcription factor MYB41-like OS=Cucurbita moschata OX=3662 GN=LOC111448366 PE=4 SV=1)
HSP 1 Score: 297 bits (760), Expect = 2.38e-99
Identity = 145/153 (94.77%), Postives = 150/153 (98.04%), Query Frame = 0
Query: 1 SSRLHTQATQLAKAHLLQNVLQILSSPSSLAISNNLFNTQQITDLLTYNHPIGSSFQTFP 60
SSRLHTQATQLAKAHLLQNVLQILSSPSSLAISNNLFNTQQIT+L TYNHPIGSSFQTFP
Sbjct: 155 SSRLHTQATQLAKAHLLQNVLQILSSPSSLAISNNLFNTQQITNL-TYNHPIGSSFQTFP 214
Query: 61 SNIQPLQEPLSCDDYATTTPTLALENDCNRAESFYDMSQCPHSLPDLIPASPECSKIPTA 120
SNIQPLQEPLSCDDYATT PTLALENDCNRAESFYDMSQCP+SLPDLIPASPECSKIPTA
Sbjct: 215 SNIQPLQEPLSCDDYATTAPTLALENDCNRAESFYDMSQCPNSLPDLIPASPECSKIPTA 274
Query: 121 IENNWVDIMDDETSNSYWKHAINQTPPPPWSVS 153
IENNW DIMDDE+S+SYWK+AINQTPPPPWSVS
Sbjct: 275 IENNWGDIMDDESSSSYWKYAINQTPPPPWSVS 306
BLAST of Cp4.1LG16g01920 vs. ExPASy TrEMBL
Match:
A0A6J1JGF6 (transcription factor MYB102-like OS=Cucurbita maxima OX=3661 GN=LOC111484279 PE=4 SV=1)
HSP 1 Score: 270 bits (690), Expect = 8.15e-89
Identity = 136/153 (88.89%), Postives = 139/153 (90.85%), Query Frame = 0
Query: 1 SSRLHTQATQLAKAHLLQNVLQILSSPSSLAISNNLFNTQQITDLLTYNHPIGSSFQTFP 60
S RLHTQA HLLQNVLQIL+SPSSLAISNNLFNTQQIT+L TYNHPIGS FQTFP
Sbjct: 155 SLRLHTQA------HLLQNVLQILNSPSSLAISNNLFNTQQITNL-TYNHPIGSFFQTFP 214
Query: 61 SNIQPLQEPLSCDDYATTTPTLALENDCNRAESFYDMSQCPHSLPDLIPASPECSKIPTA 120
SNIQPLQEPLSCDDYATT P L LENDCNRAESFYDMSQCP+SLPDLIPASPECSKIPTA
Sbjct: 215 SNIQPLQEPLSCDDYATTAPALGLENDCNRAESFYDMSQCPNSLPDLIPASPECSKIPTA 274
Query: 121 IENNWVDIMDDETSNSYWKHAINQTPPPPWSVS 153
IENNW DIMDDETSNSYWKHAINQTPPP WSVS
Sbjct: 275 IENNWGDIMDDETSNSYWKHAINQTPPP-WSVS 299
BLAST of Cp4.1LG16g01920 vs. ExPASy TrEMBL
Match:
A0A1S3CAS8 (myb-related protein Hv1-like OS=Cucumis melo OX=3656 GN=LOC103498373 PE=4 SV=1)
HSP 1 Score: 180 bits (456), Expect = 3.72e-53
Identity = 98/149 (65.77%), Postives = 115/149 (77.18%), Query Frame = 0
Query: 8 ATQLAKAHLLQNVLQILSSPSSLAISNN-LFNTQQITDLLTYNHPIGSSFQTFPSNIQPL 67
ATQLAKA LLQN+LQ+L+S SSL+ISNN +FNTQQI DL YN PIGS Q P NI+P
Sbjct: 173 ATQLAKAQLLQNLLQLLASQSSLSISNNNVFNTQQILDL-NYNLPIGSFLQNIPINIEPP 232
Query: 68 QEPLSCDDYATTTP-TLALENDCNRAESFYDMSQCPHSLPDLIPASPECSKIPTAIENNW 127
QEPLSCDDY T L +ND +R ++FYDM+Q +SLP+LIPASPECSKIPT IENNW
Sbjct: 233 QEPLSCDDYTVGTDGVLGFQNDTDRIKTFYDMNQRLNSLPNLIPASPECSKIPTTIENNW 292
Query: 128 V-DIMDDETSNSYWKHAINQTPPPPWSVS 153
D+MD E S+S WKH I+QTPP W+VS
Sbjct: 293 EEDLMDVEASDSSWKHVIDQTPPS-WTVS 319
BLAST of Cp4.1LG16g01920 vs. ExPASy TrEMBL
Match:
A0A0A0LND6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G439230 PE=4 SV=1)
HSP 1 Score: 175 bits (444), Expect = 1.39e-51
Identity = 97/143 (67.83%), Postives = 110/143 (76.92%), Query Frame = 0
Query: 3 RLHTQATQLAKAHLLQNVLQILSSPSSLAISNN-LFNTQQITDLLTYNHPIGSSFQTFPS 62
RL ATQLAKA LLQN+LQ+L+S SSL+ISNN LFNTQQI DL YN PIGS FQ P
Sbjct: 157 RLQNDATQLAKAQLLQNLLQLLASQSSLSISNNNLFNTQQILDL-NYNLPIGSFFQNIPI 216
Query: 63 NIQPLQEPLSCDDY-ATTTPTLALENDCNRAESFYDMSQCPHSLPDLIPASPECSKIPTA 122
NI+P Q PLSCDDY A T L END +R ++FYDM+Q +SLP+LIPASPECSKIPTA
Sbjct: 217 NIEPPQGPLSCDDYTAATDGALGFENDNDRIKTFYDMNQRLNSLPNLIPASPECSKIPTA 276
Query: 123 IENNWVD-IMDDETSNSYWKHAI 142
IENNW D +MD E S+S WKH I
Sbjct: 277 IENNWDDDLMDVEASDSSWKHVI 298
BLAST of Cp4.1LG16g01920 vs. ExPASy TrEMBL
Match:
A0A5D3CH64 (Myb-related protein Hv1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold66G00590 PE=4 SV=1)
HSP 1 Score: 168 bits (426), Expect = 5.14e-49
Identity = 91/138 (65.94%), Postives = 106/138 (76.81%), Query Frame = 0
Query: 8 ATQLAKAHLLQNVLQILSSPSSLAISNN-LFNTQQITDLLTYNHPIGSSFQTFPSNIQPL 67
ATQLAKA LLQN+LQ+L+S SSL+ISNN +FNTQQI DL YN PIGS Q P NI+P
Sbjct: 150 ATQLAKAQLLQNLLQLLASQSSLSISNNNVFNTQQILDL-NYNLPIGSFLQNIPINIEPP 209
Query: 68 QEPLSCDDYATTTP-TLALENDCNRAESFYDMSQCPHSLPDLIPASPECSKIPTAIENNW 127
QEPLSCDDY T L +ND +R ++FYDM+Q +SLP+LIPASPECSKIPT IENNW
Sbjct: 210 QEPLSCDDYTVGTDGVLGFQNDTDRIKTFYDMNQRLNSLPNLIPASPECSKIPTTIENNW 269
Query: 128 V-DIMDDETSNSYWKHAI 142
D+MD E S+S WKH I
Sbjct: 270 EEDLMDVEASDSSWKHVI 286
BLAST of Cp4.1LG16g01920 vs. TAIR 10
Match:
AT3G02940.1 (myb domain protein 107 )
HSP 1 Score: 48.9 bits (115), Expect = 4.2e-06
Identity = 47/182 (25.82%), Postives = 75/182 (41.21%), Query Frame = 0
Query: 1 SSRLHTQATQLAKAHLLQNVLQILSSPSSLA------ISNNLFNTQQ-ITDLLTYNHPIG 60
+ + AT +AKA LL +++Q+LS+ ++ + +NNLF + +L +P
Sbjct: 155 NQNIQLDATSVAKAQLLHSMIQVLSNNNTSSSFDIHHTTNNLFGQSSFLENLPNIENPYD 214
Query: 61 SSFQTFPSNIQPLQEPLSCDDYATTTPTLALENDCNRAESFYDMSQCPHSLPDLIPASPE 120
+ + QPL D +++ +A ++D N +P LI SP+
Sbjct: 215 QTQGLSHIDDQPL------DSFSSPIRVVAYQHDQN-------------FIPPLISTSPD 274
Query: 121 CSKIPTAIENN-------------------------WVDIMDDETSNSYWKHAINQTPPP 151
SK + N W DI+DDE S+SYWK I QT
Sbjct: 275 ESKETQMMVKNKEIMKYNDHTSNPSSTSTFTQDHQPWCDIIDDEASDSYWKEIIEQTCSE 317
BLAST of Cp4.1LG16g01920 vs. TAIR 10
Match:
AT5G16770.1 (myb domain protein 9 )
HSP 1 Score: 43.1 bits (100), Expect = 2.3e-04
Identity = 43/178 (24.16%), Postives = 66/178 (37.08%), Query Frame = 0
Query: 1 SSRLHTQATQLAKAHLLQNVLQILSSPSSLAISNNLFNTQQITDLLTYNHPIGSSFQTFP 60
+ + AT LAKA LL ++Q+LS+ ++ + +T Q ++ + Q
Sbjct: 155 NQNVQLDATTLAKAQLLHTMIQVLSTNNNTTNPSFSSSTMQNSNTNLFGQASYLENQNLF 214
Query: 61 SNIQPLQEPLSCDDYATTTPTLALENDCNRAESFYDMSQCPHSLPDLIPASPECSKIPTA 120
Q L ++ T + D + +SLP L+PASPE SK
Sbjct: 215 GQSQNFSHILEDENLMVKTQIIDNPLDSFSSPIQPGFQDDHNSLPLLVPASPEESKETQR 274
Query: 121 IENN----------------------------WVDIMDDETSNSYWKHAINQTPPPPW 151
+ N W D +DD S+S+WK I QT PW
Sbjct: 275 MIKNKDIVDYHHHDASNPSSSNSTFTQDHHHPWCDTIDDGASDSFWKEIIEQTCSEPW 332
BLAST of Cp4.1LG16g01920 vs. TAIR 10
Match:
AT5G16770.2 (myb domain protein 9 )
HSP 1 Score: 43.1 bits (100), Expect = 2.3e-04
Identity = 43/178 (24.16%), Postives = 66/178 (37.08%), Query Frame = 0
Query: 1 SSRLHTQATQLAKAHLLQNVLQILSSPSSLAISNNLFNTQQITDLLTYNHPIGSSFQTFP 60
+ + AT LAKA LL ++Q+LS+ ++ + +T Q ++ + Q
Sbjct: 155 NQNVQLDATTLAKAQLLHTMIQVLSTNNNTTNPSFSSSTMQNSNTNLFGQASYLENQNLF 214
Query: 61 SNIQPLQEPLSCDDYATTTPTLALENDCNRAESFYDMSQCPHSLPDLIPASPECSKIPTA 120
Q L ++ T + D + +SLP L+PASPE SK
Sbjct: 215 GQSQNFSHILEDENLMVKTQIIDNPLDSFSSPIQPGFQDDHNSLPLLVPASPEESKETQR 274
Query: 121 IENN----------------------------WVDIMDDETSNSYWKHAINQTPPPPW 151
+ N W D +DD S+S+WK I QT PW
Sbjct: 275 MIKNKDIVDYHHHDASNPSSSNSTFTQDHHHPWCDTIDDGASDSFWKEIIEQTCSEPW 332
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
XP_023513135.1 | 2.21e-107 | 100.00 | transcription factor MYB41-like [Cucurbita pepo subsp. pepo] >XP_023521997.1 tra... | [more] |
XP_022943689.1 | 4.91e-99 | 94.77 | transcription factor MYB41-like [Cucurbita moschata] | [more] |
KAG6571174.1 | 1.40e-89 | 94.37 | Transcription factor MYB92, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
XP_022986579.1 | 1.68e-88 | 88.89 | transcription factor MYB102-like [Cucurbita maxima] | [more] |
KAG7010979.1 | 7.29e-82 | 94.78 | Transcription factor MYB-like protein, partial [Cucurbita argyrosperma subsp. ar... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1FV33 | 2.38e-99 | 94.77 | transcription factor MYB41-like OS=Cucurbita moschata OX=3662 GN=LOC111448366 PE... | [more] |
A0A6J1JGF6 | 8.15e-89 | 88.89 | transcription factor MYB102-like OS=Cucurbita maxima OX=3661 GN=LOC111484279 PE=... | [more] |
A0A1S3CAS8 | 3.72e-53 | 65.77 | myb-related protein Hv1-like OS=Cucumis melo OX=3656 GN=LOC103498373 PE=4 SV=1 | [more] |
A0A0A0LND6 | 1.39e-51 | 67.83 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G439230 PE=4 SV=1 | [more] |
A0A5D3CH64 | 5.14e-49 | 65.94 | Myb-related protein Hv1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... | [more] |