Cp4.1LG16g00850 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG16g00850
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG16: 1597922 .. 1599391 (-)
RNA-Seq ExpressionCp4.1LG16g00850
SyntenyCp4.1LG16g00850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCATCCATGTCTCAGAGCACTTCTCGTTTCTCTTTAATTCTCAGAAACTGTGCTCGTCTTAATGCAGTTGTCCAAGCAAAGCAAGCACACGCTCAAATCCTCATCCATGGTTTGATTCCACATTTAACTCTTGTGACAGATCTACTTTTGGTGTATTGCAAATGTGGGGTTCTGCATGACGCCCGCAAGGTGTTTGACAAAATGACTCACAGAAACATGCACTCCTGGAATATCTTGATTGCTTCTTATGTTCATAGTTCTTTACATTTTGATGCAATTAATGTGTTTAACGAGTTTAGGGGCCTTGGTTTTCTGCCTGATCACTATACTTTGCCCCAGATGTTTAAGGTTAGTGTTGGTATAGGAGATGTTTATATGGGGAAGAGACTTCATTGTTGGACAATTAGGCTGGGATTTGAAGGGTATGTTGTGGTAGCCAGTACGGTTTTGGACTTCTATGCCAAATATGGGGTTGTGGGAGATGCTAAGAAGGTGTTTGATAATATGATTTTGAAAGATACAATTTCTTGGAACTCAATGATTTCTGGGTATGGGAGGGCTGGGCTTTATGGAGATGCATTGGATTGTTTCAAGCGCATGCTCTTTGAAGGAGTGAGGATGGATATCATGACAATTCCTAGCGTTTTGAATGCTTGTGGAGGGGAAGGAGATTTGAGAAAAGGTAAAGAAATTCATTGCTTAGTTTTGAAGAGTCAATTATTTGTTGCTGATGTTGCTATTGGGAACTCATTGATTGATATGTATGCAAAGTGTGGAAGCCTGTTTGATGCTGAAGAGGTCTTTAGGAATATGAGTAGCATGAATATTGTTACATGGACAACAATGATATCTTGTTATGGGGCTCATGGGAAAGGAGAGAAATCCTTGGCCCTGTTTAACAAAATGAAGGCTTGTGGAATCCAACCAAATTCTGTAACACTGACAGCCATTTTGGCTAGTTGCAGTCATGCAGGTTACATCAATGAAGGGTGGAGAATTTTCAAGTCTTTTGTTTCAGATTATGAGGTTGAACTGACGGTAGAACATTATGCTTGTGTTGTTGATCTTCTGAGTCGCTTTGGCTTTCTGCAGGAAGCGTTTATGTTGATAAGAAACATGAAACACACCGCCGCAGCAAGCATTTGGGGTGCTCTGCTTTCTGGTTGTATGATGCACAAGAACCTTGAGATAGGAGAAATTGCAGCTAACCAGCTTTTCAAGTTGGAACCTATGAATCCAAGCAATTTTATAGCTTTGATTGGTATATATGAATCTCTTGGTATGTCGCATGGCGATTCACTGACTAGAGAGAAGATGAGAGACCTGGGTTTGACGAAACTCCCTGGTTGTAGCTGGATAACCATTGAAGGAGTTGTGCATAAATTCTATGGAGGGGACAAGTCTCATCCTTTGGGGTTGAGAATATTTGAAACGCTAAGTGCAGTAAAACAAGCCAGTGTAAACTGTTAA

mRNA sequence

GCATCCATGTCTCAGAGCACTTCTCGTTTCTCTTTAATTCTCAGAAACTGTGCTCGTCTTAATGCAGTTTTTAGGGGCCTTGGTTTTCTGCCTGATCACTATACTTTGCCCCAGATGTTTAAGATGAGAGACCTGGGTTTGACGAAACTCCCTGGTTGTAGCTGGATAACCATTGAAGGAGTTGTGCATAAATTCTATGGAGGGGACAAGTCTCATCCTTTGGGGTTGAGAATATTTGAAACGCTAAGTGCAGTAAAACAAGCCAGTGTAAACTGTTAA

Coding sequence (CDS)

GCATCCATGTCTCAGAGCACTTCTCGTTTCTCTTTAATTCTCAGAAACTGTGCTCGTCTTAATGCAGTTTTTAGGGGCCTTGGTTTTCTGCCTGATCACTATACTTTGCCCCAGATGTTTAAGATGAGAGACCTGGGTTTGACGAAACTCCCTGGTTGTAGCTGGATAACCATTGAAGGAGTTGTGCATAAATTCTATGGAGGGGACAAGTCTCATCCTTTGGGGTTGAGAATATTTGAAACGCTAAGTGCAGTAAAACAAGCCAGTGTAAACTGTTAA

Protein sequence

ASMSQSTSRFSLILRNCARLNAVFRGLGFLPDHYTLPQMFKMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLGLRIFETLSAVKQASVNC
Homology
[Close]
BLAST of Cp4.1LG16g00850 vs. ExPASy Swiss-Prot
Match: Q9M1V3 (Pentatricopeptide repeat-containing protein At3g63370, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H83 PE=2 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 4.5e-08
Identity = 25/45 (55.56%), Postives = 30/45 (66.67%), Query Frame = 0 

Query: 41  KMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLGLRIFETLSAV 86
           KM+  G+ K PGCSWI ++G VHKF   DKSHP    I+E LS V
Sbjct: 815 KMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEV 859

[Close]
BLAST of Cp4.1LG16g00850 vs. ExPASy Swiss-Prot
Match: Q9SR82 (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H84 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.2e-06
Identity = 21/41 (51.22%), Postives = 27/41 (65.85%), Query Frame = 0 

Query: 42  MRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLGLRIFETL 83
           M   G+ K+PG SWI +EG VH+F   DKSHPL  +I+  L
Sbjct: 542 MNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKL 582

[Close]
BLAST of Cp4.1LG16g00850 vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.5e-06
Identity = 20/46 (43.48%), Postives = 30/46 (65.22%), Query Frame = 0 

Query: 42  MRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLGLRIFETLSAVKQ 88
           MR  GL K PGCS I I+G++H+F  GD +HP+  +++  L  V +
Sbjct: 594 MRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVME 639

[Close]
BLAST of Cp4.1LG16g00850 vs. ExPASy Swiss-Prot
Match: Q9LW63 (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 9.4e-06
Identity = 22/47 (46.81%), Postives = 28/47 (59.57%), Query Frame = 0 

Query: 41  KMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLGLRIFETLSAVKQ 88
           +MR  GL K P CSWI ++   H F  GD+SHP   +I E L AV +
Sbjct: 571 RMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVME 617

[Close]
BLAST of Cp4.1LG16g00850 vs. ExPASy Swiss-Prot
Match: Q683I9 (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-05
Identity = 20/47 (42.55%), Postives = 30/47 (63.83%), Query Frame = 0 

Query: 41  KMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLGLRIFETLSAVKQ 88
           +M   G+ K+PGCS++ +EGVVH+F  GD+S     RI+  L  + Q
Sbjct: 429 EMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQ 475

[Close]
BLAST of Cp4.1LG16g00850 vs. NCBI nr
Match: XP_022971623.1 (pentatricopeptide repeat-containing protein At5g56310-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 116 bits (291), Expect = 1.57e-28
Identity = 59/77 (76.62%), Postives = 63/77 (81.82%), Query Frame = 0 

Query: 16  NCARLNAVFRGLGFLPDHYTLPQMFKMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLG 75
           N   L  ++  LG L D  +L +  KMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLG
Sbjct: 348 NFIALIGIYESLGML-DCVSLTRE-KMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLG 407

Query: 76  LRIFETLSAVKQASVNC 92
           LRIFETLSAVKQASVNC
Sbjct: 408 LRIFETLSAVKQASVNC 422

[Close]
BLAST of Cp4.1LG16g00850 vs. NCBI nr
Match: XP_022971622.1 (pentatricopeptide repeat-containing protein At5g04780, mitochondrial-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 116 bits (291), Expect = 2.98e-28
Identity = 59/77 (76.62%), Postives = 63/77 (81.82%), Query Frame = 0 

Query: 16  NCARLNAVFRGLGFLPDHYTLPQMFKMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLG 75
           N   L  ++  LG L D  +L +  KMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLG
Sbjct: 413 NFIALIGIYESLGML-DCVSLTRE-KMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLG 472

Query: 76  LRIFETLSAVKQASVNC 92
           LRIFETLSAVKQASVNC
Sbjct: 473 LRIFETLSAVKQASVNC 487

[Close]
BLAST of Cp4.1LG16g00850 vs. NCBI nr
Match: XP_023512347.1 (pentatricopeptide repeat-containing protein At5g56310-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 115 bits (288), Expect = 4.08e-28
Identity = 57/77 (74.03%), Postives = 59/77 (76.62%), Query Frame = 0 

Query: 16  NCARLNAVFRGLGFLPDHYTLPQMFKMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLG 75
           N   L  ++  LG    H       KMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLG
Sbjct: 348 NFIALIGIYESLGM--SHGDSLTREKMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLG 407

Query: 76  LRIFETLSAVKQASVNC 92
           LRIFETLSAVKQASVNC
Sbjct: 408 LRIFETLSAVKQASVNC 422

[Close]
BLAST of Cp4.1LG16g00850 vs. NCBI nr
Match: XP_023512346.1 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 115 bits (288), Expect = 7.73e-28
Identity = 57/77 (74.03%), Postives = 59/77 (76.62%), Query Frame = 0 

Query: 16  NCARLNAVFRGLGFLPDHYTLPQMFKMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLG 75
           N   L  ++  LG    H       KMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLG
Sbjct: 413 NFIALIGIYESLGM--SHGDSLTREKMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLG 472

Query: 76  LRIFETLSAVKQASVNC 92
           LRIFETLSAVKQASVNC
Sbjct: 473 LRIFETLSAVKQASVNC 487

[Close]
BLAST of Cp4.1LG16g00850 vs. NCBI nr
Match: XP_022932002.1 (pentatricopeptide repeat-containing protein At5g56310-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 114 bits (285), Expect = 1.14e-27
Identity = 56/77 (72.73%), Postives = 59/77 (76.62%), Query Frame = 0 

Query: 16  NCARLNAVFRGLGFLPDHYTLPQMFKMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLG 75
           N   L  ++  LG    H       KMR+LGLTKLPGCSWITIEGVVHKFYGGDKSHPLG
Sbjct: 348 NFIALIGIYESLGM--SHGVSLTRGKMRELGLTKLPGCSWITIEGVVHKFYGGDKSHPLG 407

Query: 76  LRIFETLSAVKQASVNC 92
           LRIFETLSAVKQASVNC
Sbjct: 408 LRIFETLSAVKQASVNC 422

[Close]
BLAST of Cp4.1LG16g00850 vs. ExPASy TrEMBL
Match: A0A6J1I7E7 (pentatricopeptide repeat-containing protein At5g56310-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470305 PE=4 SV=1)

HSP 1 Score: 116 bits (291), Expect = 7.58e-29
Identity = 59/77 (76.62%), Postives = 63/77 (81.82%), Query Frame = 0 

Query: 16  NCARLNAVFRGLGFLPDHYTLPQMFKMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLG 75
           N   L  ++  LG L D  +L +  KMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLG
Sbjct: 348 NFIALIGIYESLGML-DCVSLTRE-KMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLG 407

Query: 76  LRIFETLSAVKQASVNC 92
           LRIFETLSAVKQASVNC
Sbjct: 408 LRIFETLSAVKQASVNC 422

[Close]
BLAST of Cp4.1LG16g00850 vs. ExPASy TrEMBL
Match: A0A6J1I2G9 (pentatricopeptide repeat-containing protein At5g04780, mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470305 PE=4 SV=1)

HSP 1 Score: 116 bits (291), Expect = 1.44e-28
Identity = 59/77 (76.62%), Postives = 63/77 (81.82%), Query Frame = 0 

Query: 16  NCARLNAVFRGLGFLPDHYTLPQMFKMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLG 75
           N   L  ++  LG L D  +L +  KMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLG
Sbjct: 413 NFIALIGIYESLGML-DCVSLTRE-KMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLG 472

Query: 76  LRIFETLSAVKQASVNC 92
           LRIFETLSAVKQASVNC
Sbjct: 473 LRIFETLSAVKQASVNC 487

[Close]
BLAST of Cp4.1LG16g00850 vs. ExPASy TrEMBL
Match: A0A6J1EVE9 (pentatricopeptide repeat-containing protein At5g56310-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111438329 PE=4 SV=1)

HSP 1 Score: 114 bits (285), Expect = 5.53e-28
Identity = 56/77 (72.73%), Postives = 59/77 (76.62%), Query Frame = 0 

Query: 16  NCARLNAVFRGLGFLPDHYTLPQMFKMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLG 75
           N   L  ++  LG    H       KMR+LGLTKLPGCSWITIEGVVHKFYGGDKSHPLG
Sbjct: 348 NFIALIGIYESLGM--SHGVSLTRGKMRELGLTKLPGCSWITIEGVVHKFYGGDKSHPLG 407

Query: 76  LRIFETLSAVKQASVNC 92
           LRIFETLSAVKQASVNC
Sbjct: 408 LRIFETLSAVKQASVNC 422

[Close]
BLAST of Cp4.1LG16g00850 vs. ExPASy TrEMBL
Match: A0A6J1EV55 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111438329 PE=4 SV=1)

HSP 1 Score: 114 bits (285), Expect = 1.02e-27
Identity = 56/77 (72.73%), Postives = 59/77 (76.62%), Query Frame = 0 

Query: 16  NCARLNAVFRGLGFLPDHYTLPQMFKMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLG 75
           N   L  ++  LG    H       KMR+LGLTKLPGCSWITIEGVVHKFYGGDKSHPLG
Sbjct: 413 NFIALIGIYESLGM--SHGVSLTRGKMRELGLTKLPGCSWITIEGVVHKFYGGDKSHPLG 472

Query: 76  LRIFETLSAVKQASVNC 92
           LRIFETLSAVKQASVNC
Sbjct: 473 LRIFETLSAVKQASVNC 487

[Close]
BLAST of Cp4.1LG16g00850 vs. ExPASy TrEMBL
Match: A0A6J1F0Z8 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438329 PE=4 SV=1)

HSP 1 Score: 114 bits (285), Expect = 1.02e-27
Identity = 56/77 (72.73%), Postives = 59/77 (76.62%), Query Frame = 0 

Query: 16  NCARLNAVFRGLGFLPDHYTLPQMFKMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLG 75
           N   L  ++  LG    H       KMR+LGLTKLPGCSWITIEGVVHKFYGGDKSHPLG
Sbjct: 413 NFIALIGIYESLGM--SHGVSLTRGKMRELGLTKLPGCSWITIEGVVHKFYGGDKSHPLG 472

Query: 76  LRIFETLSAVKQASVNC 92
           LRIFETLSAVKQASVNC
Sbjct: 473 LRIFETLSAVKQASVNC 487

[Close]
BLAST of Cp4.1LG16g00850 vs. TAIR 10
Match: AT3G63370.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 3.2e-09
Identity = 25/45 (55.56%), Postives = 30/45 (66.67%), Query Frame = 0 

Query: 41  KMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLGLRIFETLSAV 86
           KM+  G+ K PGCSWI ++G VHKF   DKSHP    I+E LS V
Sbjct: 815 KMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEV 859

[Close]
BLAST of Cp4.1LG16g00850 vs. TAIR 10
Match: AT3G08820.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 3.0e-07
Identity = 21/41 (51.22%), Postives = 27/41 (65.85%), Query Frame = 0 

Query: 42  MRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLGLRIFETL 83
           M   G+ K+PG SWI +EG VH+F   DKSHPL  +I+  L
Sbjct: 542 MNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKL 582

[Close]
BLAST of Cp4.1LG16g00850 vs. TAIR 10
Match: AT2G29760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 51.6 bits (122), Expect = 3.9e-07
Identity = 20/46 (43.48%), Postives = 30/46 (65.22%), Query Frame = 0 

Query: 42  MRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLGLRIFETLSAVKQ 88
           MR  GL K PGCS I I+G++H+F  GD +HP+  +++  L  V +
Sbjct: 594 MRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVME 639

[Close]
BLAST of Cp4.1LG16g00850 vs. TAIR 10
Match: AT3G23330.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 50.8 bits (120), Expect = 6.6e-07
Identity = 22/47 (46.81%), Postives = 28/47 (59.57%), Query Frame = 0 

Query: 41  KMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLGLRIFETLSAVKQ 88
           +MR  GL K P CSWI ++   H F  GD+SHP   +I E L AV +
Sbjct: 571 RMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVME 617

[Close]
BLAST of Cp4.1LG16g00850 vs. TAIR 10
Match: AT1G20230.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 8.7e-07
Identity = 21/47 (44.68%), Postives = 28/47 (59.57%), Query Frame = 0 

Query: 41  KMRDLGLTKLPGCSWITIEGVVHKFYGGDKSHPLGLRIFETLSAVKQ 88
           KM  LGL K PGCSWI ++  V+    GDKSHP   +I E +  + +
Sbjct: 616 KMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISK 662

The following BLAST results are available for this feature:
BLAST of Cp4.1LG16g00850 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M1V34.5e-0855.56Pentatricopeptide repeat-containing protein At3g63370, chloroplastic OS=Arabidop... [more]
Q9SR824.2e-0651.22Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis th... [more]
O823805.5e-0643.48Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop... [more]
Q9LW639.4e-0646.81Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis th... [more]
Q683I91.2e-0542.55Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana OX... [more]
BLAST of Cp4.1LG16g00850 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022971623.11.57e-2876.62pentatricopeptide repeat-containing protein At5g56310-like isoform X2 [Cucurbita... [more]
XP_022971622.12.98e-2876.62pentatricopeptide repeat-containing protein At5g04780, mitochondrial-like isofor... [more]
XP_023512347.14.08e-2874.03pentatricopeptide repeat-containing protein At5g56310-like isoform X2 [Cucurbita... [more]
XP_023512346.17.73e-2874.03pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isofor... [more]
XP_022932002.11.14e-2772.73pentatricopeptide repeat-containing protein At5g56310-like isoform X3 [Cucurbita... [more]
BLAST of Cp4.1LG16g00850 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I7E77.58e-2976.62pentatricopeptide repeat-containing protein At5g56310-like isoform X2 OS=Cucurbi... [more]
A0A6J1I2G91.44e-2876.62pentatricopeptide repeat-containing protein At5g04780, mitochondrial-like isofor... [more]
A0A6J1EVE95.53e-2872.73pentatricopeptide repeat-containing protein At5g56310-like isoform X3 OS=Cucurbi... [more]
A0A6J1EV551.02e-2772.73pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isofor... [more]
A0A6J1F0Z81.02e-2772.73pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isofor... [more]
BLAST of Cp4.1LG16g00850 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G63370.13.2e-0955.56Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G08820.13.0e-0751.22Pentatricopeptide repeat (PPR) superfamily protein [more]
AT2G29760.13.9e-0743.48Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G23330.16.6e-0746.81Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G20230.18.7e-0744.68Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24015OS07G0578800 PROTEIN-RELATEDcoord: 41..88
NoneNo IPR availablePANTHERPTHR24015:SF1973OS11G0213500 PROTEINcoord: 41..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g00850.1Cp4.1LG16g00850.1mRNA