Cp4.1LG16g00840 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG16g00840
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG16: 1612320 .. 1613916 (-)
RNA-Seq ExpressionCp4.1LG16g00840
SyntenyCp4.1LG16g00840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCCACATGGCAAGCTGCCAAGCTCCATGAACTCCATGTCCATGGGTTACAAAAGGGGTGCTTTTCATTCCCTTGCTTCTCCTCCTACTGGTTCCTCCATTTGCATGGATAAGATAAGGTTGATTGAAGCCATAATAATGGGAAGAATGGATAGGAAATCATCCATTGAAACAGAGCCGAGGACTCTCAAAATGAACCAAATCCAATTTGCAAGAGTAAGTATGGAAGGCTTAATGATTGCGTGTGTGTGTGTGTTTTTGGTTTGAGTAAGGCTTTCAGATGAGCAATGGTTTTGTGATGAACTGCAGGAAGCAGCGCTGTACGTGATGAACACAACTAGCATGGAAGAAGCAATCAAGATCTTCACAGAGGTAATATCATACACAAATTTCGCTATCAATCATTATCAGATTCCATATTAATTGGAGTTGGGTAACGAAACATTCCTTATAAAGGTATGAAAATCGCTCCATAGTACACGCATTTTAAAATCGTGAGACTGATGACGATACGTAACGGGCCAAAGCGGACATGTCGCTCTATTAGTGTTGGGCTTGGGCTATTACAAATGGTATTTGTGCCAACCACGGCTCTCTCTGGCCCCTAAAAGAGTGGATTGTGAGATCCCACGTTAGTTGGAGAGGGGAACAAAGCATTCCTTATAAGAGTGTGAAAATCTCTCCCTAGGTTGGTAGCGGTACGTAACAGGCCAAAGCGGACATATCTAGGTGGGCTTGGGCTATTACAAATGGTTTCAAAGCCAGACAATGGACAGTGTGTCAGTAAGGACGCTGACCCTTTAGGGAGGTGGATTGTGAGATCTCATATTCGTTGTAGAGGGAAAACGAAGCATTTCTTATACGAGTGTGGAAACCTCTCCCTAGTAGACGTATTTTGAAACTGTGAGGCTGACAAAGCGGAAAATATCTACCAGCGGTGAGCTTGGACTATTACAAATGGTATCAGAGCCAGCCACCGAGCTATGAGCTAGCAAGGACGCTGCTCCCAAAGGGGTGGATTTTGAAATCTCATTCGTTGGGGGAGGGAAACGAAGCATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACACGTTTGAAAACCTTGAGGTTGACGGCGATACATAATGAGTCAAAATGGACAATATCTACTAGCGGTGGGTTTGAGGTACTACAAATGGTATCAGAGTCACAGAATCGCATACCGTGTAGTGTGCCAGCGAGGATGTTGACCCTCAAAGTGGTGGATTGTGAGATTCCACGTTGGTTGGAGAGGGGAACGGAACGGAACAGAACATTCTTACCCCTCTCTAATAGACACGTTTTAAAACTGTGAGGCTGATGACGATACCTAACGGACCAAAACAAACAATATTTACTAGCGGTGAAATAGAGCTATTACAATTACTTTAATATAAAAAAATGGAAAAGGGTTATATGATGGTGATGTAGTGGAAATTGCAGGGATTAGAAGCAGTGGAATGCAAAGCAATTCGAGATGAAGATGAATCCATAATGGAGAATTGGTTCCATGAACAAGAAGCTGATGAGCTTCCACCTCTTTATCAGCTAAGAGACATTGTCACTGCCCCTTTT

mRNA sequence

AGCCACATGGCAAGCTGCCAAGCTCCATGAACTCCATGTCCATGGGTTACAAAAGGGGTGCTTTTCATTCCCTTGCTTCTCCTCCTACTGGTTCCTCCATTTGCATGGATAAGATAAGGTTGATTGAAGCCATAATAATGGGAAGAATGGATAGGAAATCATCCATTGAAACAGAGCCGAGGACTCTCAAAATGAACCAAATCCAATTTGCAAGAGTAAGTATGGAAGGCTTAATGATTGCGTATGAGCAATGGTTTTGTGATGAACTGCAGGAAGCAGCGCTGTACGGATTAGAAGCAGTGGAATGCAAAGCAATTCGAGATGAAGATGAATCCATAATGGAGAATTGGTTCCATGAACAAGAAGCTGATGAGCTTCCACCTCTTTATCAGCTAAGAGACATTGTCACTGCCCCTTTT

Coding sequence (CDS)

ATGAACTCCATGTCCATGGGTTACAAAAGGGGTGCTTTTCATTCCCTTGCTTCTCCTCCTACTGGTTCCTCCATTTGCATGGATAAGATAAGGTTGATTGAAGCCATAATAATGGGAAGAATGGATAGGAAATCATCCATTGAAACAGAGCCGAGGACTCTCAAAATGAACCAAATCCAATTTGCAAGAGTAAGTATGGAAGGCTTAATGATTGCGTATGAGCAATGGTTTTGTGATGAACTGCAGGAAGCAGCGCTGTACGGATTAGAAGCAGTGGAATGCAAAGCAATTCGAGATGAAGATGAATCCATAATGGAGAATTGGTTCCATGAACAAGAAGCTGATGAGCTTCCACCTCTTTATCAGCTAAGAGACATTGTCACTGCCCCTTTT

Protein sequence

MNSMSMGYKRGAFHSLASPPTGSSICMDKIRLIEAIIMGRMDRKSSIETEPRTLKMNQIQFARVSMEGLMIAYEQWFCDELQEAALYGLEAVECKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF
Homology
BLAST of Cp4.1LG16g00840 vs. NCBI nr
Match: KAG6571348.1 (hypothetical protein SDJN03_30263, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 145 bits (366), Expect = 2.29e-42
Identity = 80/105 (76.19%), Postives = 83/105 (79.05%), Query Frame = 0

Query: 27  MDKIRLIEAIIMGRMDRKSSIETEPRTLKMNQIQFARVSMEGLMIAYEQWFCDELQEAAL 86
           MDKIRLIEAI MGRMDRKSSIE EPRTLKMNQIQFAR   E  +        +E  +   
Sbjct: 1   MDKIRLIEAI-MGRMDRKSSIEREPRTLKMNQIQFAR---EAALYVMNTTSMEEAIKIFT 60

Query: 87  YGLEAVECKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF 131
            GLEA ECKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF
Sbjct: 61  EGLEAAECKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF 101

BLAST of Cp4.1LG16g00840 vs. NCBI nr
Match: XP_023512402.1 (uncharacterized protein LOC111777167 [Cucurbita pepo subsp. pepo] >KAG7011119.1 hypothetical protein SDJN02_27917, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136 bits (342), Expect = 7.61e-39
Identity = 72/94 (76.60%), Postives = 75/94 (79.79%), Query Frame = 0

Query: 38  MGRMDRKSSIETEPRTLKMNQIQFARVSMEGLMIAYEQWFCDELQEAALYGLEAVECKAI 97
           MGRMDRKSSIETEPRTLKMNQIQFAR   E  +        +E  +    GLEAVECKAI
Sbjct: 1   MGRMDRKSSIETEPRTLKMNQIQFAR---EAALYVMNTTSMEEAIKIFTEGLEAVECKAI 60

Query: 98  RDEDESIMENWFHEQEADELPPLYQLRDIVTAPF 131
           RDEDESIMENWFHEQEADELPPLYQLRDIVTAPF
Sbjct: 61  RDEDESIMENWFHEQEADELPPLYQLRDIVTAPF 91

BLAST of Cp4.1LG16g00840 vs. NCBI nr
Match: XP_008460897.1 (PREDICTED: uncharacterized protein LOC103499638 [Cucumis melo])

HSP 1 Score: 102 bits (255), Expect = 1.32e-25
Identity = 56/95 (58.95%), Postives = 67/95 (70.53%), Query Frame = 0

Query: 38  MGRMDRKSSIETEPRTLKMNQIQFARVSMEGLMIAYEQWFCDELQEAALYGLEAVECKAI 97
           MG +DRKSSIE EPRTLKMNQIQFAR   E  +        +E  +    GL+ VECKAI
Sbjct: 1   MGSIDRKSSIENEPRTLKMNQIQFAR---EAALYVLNTTTIEEAMKIFTEGLKPVECKAI 60

Query: 98  RDED-ESIMENWFHEQEADELPPLYQLRDIVTAPF 131
            DED +SIM+NW+H++E DEL P  QLRDIV+APF
Sbjct: 61  IDEDKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 92

BLAST of Cp4.1LG16g00840 vs. NCBI nr
Match: XP_011649401.1 (uncharacterized protein LOC105434623 [Cucumis sativus] >KGN62156.1 hypothetical protein Csa_006615 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 8.69e-24
Identity = 52/95 (54.74%), Postives = 67/95 (70.53%), Query Frame = 0

Query: 38  MGRMDRKSSIETEPRTLKMNQIQFARVSMEGLMIAYEQWFCDELQEAALYGLEAVECKAI 97
           MG +DRKSSIE EPRTLKM+QIQFAR   E  +        +E  +    GL+ VECKAI
Sbjct: 1   MGSIDRKSSIENEPRTLKMHQIQFAR---EAALYVMNTATIEEAMKIFTEGLQPVECKAI 60

Query: 98  RDEDESIMENWFHEQEADE-LPPLYQLRDIVTAPF 131
            ++ +SI++NW+H++E DE L P YQLRDIV+APF
Sbjct: 61  MEDKDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92

BLAST of Cp4.1LG16g00840 vs. NCBI nr
Match: XP_038902606.1 (uncharacterized protein LOC120089256 [Benincasa hispida])

HSP 1 Score: 95.5 bits (236), Expect = 9.47e-23
Identity = 53/94 (56.38%), Postives = 66/94 (70.21%), Query Frame = 0

Query: 38  MGRMDRKSSIETEPRTLKMNQIQFARVSMEGLMIAYEQWFCDELQEAALYGLEAVECKAI 97
           MG +DRKSSIE EPRTL+M+QIQFAR   E  +        +E  +    GL+ VECKAI
Sbjct: 1   MGNIDRKSSIENEPRTLRMHQIQFAR---EAALYVINTTTIEEAMKIFTEGLQPVECKAI 60

Query: 98  RDEDESIMENWFHEQEADELPPLYQLRDIVTAPF 131
           +D+D SIM N++HE+E DEL  LYQ RDIV+APF
Sbjct: 61  QDKD-SIMGNYYHEEEDDELQSLYQPRDIVSAPF 90

BLAST of Cp4.1LG16g00840 vs. ExPASy TrEMBL
Match: A0A1S3CDH2 (uncharacterized protein LOC103499638 OS=Cucumis melo OX=3656 GN=LOC103499638 PE=4 SV=1)

HSP 1 Score: 102 bits (255), Expect = 6.37e-26
Identity = 56/95 (58.95%), Postives = 67/95 (70.53%), Query Frame = 0

Query: 38  MGRMDRKSSIETEPRTLKMNQIQFARVSMEGLMIAYEQWFCDELQEAALYGLEAVECKAI 97
           MG +DRKSSIE EPRTLKMNQIQFAR   E  +        +E  +    GL+ VECKAI
Sbjct: 1   MGSIDRKSSIENEPRTLKMNQIQFAR---EAALYVLNTTTIEEAMKIFTEGLKPVECKAI 60

Query: 98  RDED-ESIMENWFHEQEADELPPLYQLRDIVTAPF 131
            DED +SIM+NW+H++E DEL P  QLRDIV+APF
Sbjct: 61  IDEDKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 92

BLAST of Cp4.1LG16g00840 vs. ExPASy TrEMBL
Match: A0A0A0LQ89 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302230 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.21e-24
Identity = 52/95 (54.74%), Postives = 67/95 (70.53%), Query Frame = 0

Query: 38  MGRMDRKSSIETEPRTLKMNQIQFARVSMEGLMIAYEQWFCDELQEAALYGLEAVECKAI 97
           MG +DRKSSIE EPRTLKM+QIQFAR   E  +        +E  +    GL+ VECKAI
Sbjct: 1   MGSIDRKSSIENEPRTLKMHQIQFAR---EAALYVMNTATIEEAMKIFTEGLQPVECKAI 60

Query: 98  RDEDESIMENWFHEQEADE-LPPLYQLRDIVTAPF 131
            ++ +SI++NW+H++E DE L P YQLRDIV+APF
Sbjct: 61  MEDKDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92

BLAST of Cp4.1LG16g00840 vs. ExPASy TrEMBL
Match: A0A6J1G887 (uncharacterized protein LOC111451648 OS=Cucurbita moschata OX=3662 GN=LOC111451648 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.06e-21
Identity = 53/94 (56.38%), Postives = 61/94 (64.89%), Query Frame = 0

Query: 38  MGRMDRKSSIETEPRTLKMNQIQFARVSMEGLMIAYEQWFCDELQEAALYGLEAVECKAI 97
           M R+DRKSSIE EPRTLKM+QIQFAR   E  +        +E       GLEAVECK I
Sbjct: 1   MERIDRKSSIENEPRTLKMHQIQFAR---EAALYVINTSSIEEAMRIFTEGLEAVECKPI 60

Query: 98  RDEDESIMENWFHEQEADELPPLYQLRDIVTAPF 131
            D D S M+N  HE+E DELP  Y+L DIV+APF
Sbjct: 61  EDRDSS-MQNCCHEEEVDELPSFYRLPDIVSAPF 90

BLAST of Cp4.1LG16g00840 vs. ExPASy TrEMBL
Match: A0A6J1DBC1 (uncharacterized protein LOC111018915 OS=Momordica charantia OX=3673 GN=LOC111018915 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.19e-19
Identity = 50/96 (52.08%), Postives = 61/96 (63.54%), Query Frame = 0

Query: 37  IMGRMDRKSSIETEPRTLKMNQIQFARVSMEGLMIAYEQWFCDELQEAALYGLEAVECKA 96
           IMGR+DRKSSIE EPRTLKM+QIQFAR   E  +        DE       GLE VECKA
Sbjct: 5   IMGRIDRKSSIENEPRTLKMHQIQFAR---EAALYILNTTTIDEAMRIFTEGLETVECKA 64

Query: 97  IRDED-ESIMENWFHEQEADELPPLYQLRDIVTAPF 131
            RD +     +  ++E+E  +L PLY+ RDIV+APF
Sbjct: 65  TRDRNINGRKKQVYYEEELSDLEPLYRFRDIVSAPF 97

BLAST of Cp4.1LG16g00840 vs. ExPASy TrEMBL
Match: A0A6J1I9E9 (uncharacterized protein LOC111470407 OS=Cucurbita maxima OX=3661 GN=LOC111470407 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 7.92e-08
Identity = 26/28 (92.86%), Postives = 28/28 (100.00%), Query Frame = 0

Query: 38 MGRMDRKSSIETEPRTLKMNQIQFARVS 65
          MGRMDRKSSIETEPRTLKMNQIQFAR++
Sbjct: 1  MGRMDRKSSIETEPRTLKMNQIQFARLT 28

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6571348.12.29e-4276.19hypothetical protein SDJN03_30263, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023512402.17.61e-3976.60uncharacterized protein LOC111777167 [Cucurbita pepo subsp. pepo] >KAG7011119.1 ... [more]
XP_008460897.11.32e-2558.95PREDICTED: uncharacterized protein LOC103499638 [Cucumis melo][more]
XP_011649401.18.69e-2454.74uncharacterized protein LOC105434623 [Cucumis sativus] >KGN62156.1 hypothetical ... [more]
XP_038902606.19.47e-2356.38uncharacterized protein LOC120089256 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A1S3CDH26.37e-2658.95uncharacterized protein LOC103499638 OS=Cucumis melo OX=3656 GN=LOC103499638 PE=... [more]
A0A0A0LQ894.21e-2454.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302230 PE=4 SV=1[more]
A0A6J1G8871.06e-2156.38uncharacterized protein LOC111451648 OS=Cucurbita moschata OX=3662 GN=LOC1114516... [more]
A0A6J1DBC11.19e-1952.08uncharacterized protein LOC111018915 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A6J1I9E97.92e-0892.86uncharacterized protein LOC111470407 OS=Cucurbita maxima OX=3661 GN=LOC111470407... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g00840.1Cp4.1LG16g00840.1mRNA