Cp4.1LG16g00440 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG16g00440
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionSynechocystis YCF37
LocationCp4.1LG16: 231554 .. 232054 (+)
RNA-Seq ExpressionCp4.1LG16g00440
SyntenyCp4.1LG16g00440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCACAATCTCACCCATTCTCCAAATCCTCCAACCACGATGCCGATTAAACATCACCGTCCGCGCCGCCTCAGTGAAACCACCGCCGGAATCTCTCTCTGCCGCCAGAACTCGGCGACAGACACTGTTGATTCTTACGGCGACGGCGACGGCGGCGGTAGTGGGGAGAGAGAATCCGTCAATGGCAGAGGACATTCCTCTGTTCGGGCTGAGGAAGAAGCTGAAGAAGGTGGAAGAGGAGGCGGAAGAGATCGTGAGGGAAGGATTCGAGGCGGCGGAGAAAGGACTTGAGACGGCGGAGCGAGGGATCGTTACGGCGGAGAAGGGCATTATAACGGCGGAGAGAGGGATCGAAACGGCGGAGAAAGAAATCGAATCAGCGGTGAATTTCGGAGCTCTGTCGCAGGCCGGAGCGGTCGCTGGAGCTGAGGTCGTCGGAGTGCTTGTTGCTACTTCAATTGTTAATGGTATTTTGGGTCCTGAAGCGCAGAGATAA

mRNA sequence

ATGGCTTCCACAATCTCACCCATTCTCCAAATCCTCCAACCACGATGCCGATTAAACATCACCGTCCGCGCCGCCTCAGTGAAACCACCGCCGGAATCTCTCTCTGCCGCCAGAACTCGGCGACAGACACTGTTGATTCTTACGGCGACGGCGACGGCGGCGGTAGTGGGGAGAGAGAATCCGTCAATGGCAGAGGACATTCCTCTGTTCGGGCTGAGGAAGAAGCTGAAGAAGGTGGAAGAGGAGGCGGAAGAGATCGTGAGGGAAGGATTCGAGGCGGCGGAGAAAGGACTTGAGACGGCGGAGCGAGGGATCGTTACGGCGGAGAAGGGCATTATAACGGCGGAGAGAGGGATCGAAACGGCGGAGAAAGAAATCGAATCAGCGGTGAATTTCGGAGCTCTGTCGCAGGCCGGAGCGGTCGCTGGAGCTGAGGTCGTCGGAGTGCTTGTTGCTACTTCAATTGTTAATGGTATTTTGGGTCCTGAAGCGCAGAGATAA

Coding sequence (CDS)

ATGGCTTCCACAATCTCACCCATTCTCCAAATCCTCCAACCACGATGCCGATTAAACATCACCGTCCGCGCCGCCTCAGTGAAACCACCGCCGGAATCTCTCTCTGCCGCCAGAACTCGGCGACAGACACTGTTGATTCTTACGGCGACGGCGACGGCGGCGGTAGTGGGGAGAGAGAATCCGTCAATGGCAGAGGACATTCCTCTGTTCGGGCTGAGGAAGAAGCTGAAGAAGGTGGAAGAGGAGGCGGAAGAGATCGTGAGGGAAGGATTCGAGGCGGCGGAGAAAGGACTTGAGACGGCGGAGCGAGGGATCGTTACGGCGGAGAAGGGCATTATAACGGCGGAGAGAGGGATCGAAACGGCGGAGAAAGAAATCGAATCAGCGGTGAATTTCGGAGCTCTGTCGCAGGCCGGAGCGGTCGCTGGAGCTGAGGTCGTCGGAGTGCTTGTTGCTACTTCAATTGTTAATGGTATTTTGGGTCCTGAAGCGCAGAGATAA

Protein sequence

MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGRENPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIETAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR
Homology
BLAST of Cp4.1LG16g00440 vs. NCBI nr
Match: XP_022928047.1 (uncharacterized protein LOC111434949 [Cucurbita moschata] >XP_023512058.1 uncharacterized protein LOC111776892 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 299 bits (765), Expect = 1.23e-101
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0

Query: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN 60
           MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN
Sbjct: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN 60

Query: 61  PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120
           PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE
Sbjct: 61  PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120

Query: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 166
           TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR
Sbjct: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 166

BLAST of Cp4.1LG16g00440 vs. NCBI nr
Match: XP_022971729.1 (uncharacterized protein LOC111470397 [Cucurbita maxima])

HSP 1 Score: 293 bits (750), Expect = 2.39e-99
Identity = 163/165 (98.79%), Postives = 164/165 (99.39%), Query Frame = 0

Query: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN 60
           MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN
Sbjct: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN 60

Query: 61  PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120
           PSMAE+IPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE
Sbjct: 61  PSMAENIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120

Query: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 165
           TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPE Q
Sbjct: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQ 165

BLAST of Cp4.1LG16g00440 vs. NCBI nr
Match: KAG6571416.1 (hypothetical protein SDJN03_30331, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011180.1 hypothetical protein SDJN02_27978, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 289 bits (739), Expect = 1.06e-97
Identity = 163/166 (98.19%), Postives = 163/166 (98.19%), Query Frame = 0

Query: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN 60
           MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTAT   AVVGREN
Sbjct: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATG--AVVGREN 60

Query: 61  PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120
           PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE
Sbjct: 61  PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120

Query: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 166
           TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR
Sbjct: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 164

BLAST of Cp4.1LG16g00440 vs. NCBI nr
Match: XP_004148045.1 (uncharacterized protein LOC101208092 [Cucumis sativus] >KGN62038.1 hypothetical protein Csa_006379 [Cucumis sativus])

HSP 1 Score: 266 bits (679), Expect = 1.64e-88
Identity = 151/166 (90.96%), Postives = 157/166 (94.58%), Query Frame = 0

Query: 1   MAST-ISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGRE 60
           MAST ISP LQIL+PRCRL+ TVRAA+VK P ESLSA+RTRRQTLL LTATATAAVVGRE
Sbjct: 1   MASTAISPALQILRPRCRLSNTVRAAAVKSPSESLSASRTRRQTLLFLTATATAAVVGRE 60

Query: 61  NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGI 120
           NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGII AER I
Sbjct: 61  NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIIAAEREI 120

Query: 121 ETAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 165
           ETAEKEIE+AVNFGALSQAGAVAGAEVVGVL+ATSIVNGILGPE Q
Sbjct: 121 ETAEKEIETAVNFGALSQAGAVAGAEVVGVLIATSIVNGILGPEGQ 166

BLAST of Cp4.1LG16g00440 vs. NCBI nr
Match: XP_038900735.1 (uncharacterized protein LOC120087852 [Benincasa hispida])

HSP 1 Score: 260 bits (664), Expect = 3.27e-86
Identity = 150/167 (89.82%), Postives = 156/167 (93.41%), Query Frame = 0

Query: 1   MAST-ISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAA-VVGR 60
           MAST ISP+LQIL  RCRLNITVRAA+VK  PESLSA RTRRQTLL LTATA AA VVGR
Sbjct: 1   MASTAISPVLQILPSRCRLNITVRAAAVKSLPESLSARRTRRQTLLFLTATAAAAAVVGR 60

Query: 61  ENPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERG 120
           ENPS+AEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAE+GI+ AERG
Sbjct: 61  ENPSVAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEQGIVAAERG 120

Query: 121 IETAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 165
           IETAEKEIE+AVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPE Q
Sbjct: 121 IETAEKEIETAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQ 167

BLAST of Cp4.1LG16g00440 vs. ExPASy TrEMBL
Match: A0A6J1EIT8 (uncharacterized protein LOC111434949 OS=Cucurbita moschata OX=3662 GN=LOC111434949 PE=4 SV=1)

HSP 1 Score: 299 bits (765), Expect = 5.98e-102
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0

Query: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN 60
           MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN
Sbjct: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN 60

Query: 61  PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120
           PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE
Sbjct: 61  PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120

Query: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 166
           TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR
Sbjct: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 166

BLAST of Cp4.1LG16g00440 vs. ExPASy TrEMBL
Match: A0A6J1I9D9 (uncharacterized protein LOC111470397 OS=Cucurbita maxima OX=3661 GN=LOC111470397 PE=4 SV=1)

HSP 1 Score: 293 bits (750), Expect = 1.16e-99
Identity = 163/165 (98.79%), Postives = 164/165 (99.39%), Query Frame = 0

Query: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN 60
           MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN
Sbjct: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN 60

Query: 61  PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120
           PSMAE+IPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE
Sbjct: 61  PSMAENIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120

Query: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 165
           TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPE Q
Sbjct: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQ 165

BLAST of Cp4.1LG16g00440 vs. ExPASy TrEMBL
Match: A0A0A0LJU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292190 PE=4 SV=1)

HSP 1 Score: 266 bits (679), Expect = 7.93e-89
Identity = 151/166 (90.96%), Postives = 157/166 (94.58%), Query Frame = 0

Query: 1   MAST-ISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGRE 60
           MAST ISP LQIL+PRCRL+ TVRAA+VK P ESLSA+RTRRQTLL LTATATAAVVGRE
Sbjct: 1   MASTAISPALQILRPRCRLSNTVRAAAVKSPSESLSASRTRRQTLLFLTATATAAVVGRE 60

Query: 61  NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGI 120
           NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGII AER I
Sbjct: 61  NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIIAAEREI 120

Query: 121 ETAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 165
           ETAEKEIE+AVNFGALSQAGAVAGAEVVGVL+ATSIVNGILGPE Q
Sbjct: 121 ETAEKEIETAVNFGALSQAGAVAGAEVVGVLIATSIVNGILGPEGQ 166

BLAST of Cp4.1LG16g00440 vs. ExPASy TrEMBL
Match: A0A5D3CRC5 (Synechocystis YCF37 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002670 PE=4 SV=1)

HSP 1 Score: 258 bits (660), Expect = 5.82e-86
Identity = 149/166 (89.76%), Postives = 156/166 (93.98%), Query Frame = 0

Query: 1   MAST-ISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGRE 60
           MAST ISP LQIL+PRCRL+ TVRAA+VKPP ESLSA+RTRRQTLL LTATA  AVVGRE
Sbjct: 1   MASTAISPALQILRPRCRLSNTVRAAAVKPPSESLSASRTRRQTLLFLTATA--AVVGRE 60

Query: 61  NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGI 120
           NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGII AER I
Sbjct: 61  NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIIAAEREI 120

Query: 121 ETAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 165
           ETAEKEIE+AV+FGALSQAGAVAGAEVVGVL+ATSIVNGILGPE Q
Sbjct: 121 ETAEKEIETAVSFGALSQAGAVAGAEVVGVLIATSIVNGILGPEGQ 164

BLAST of Cp4.1LG16g00440 vs. ExPASy TrEMBL
Match: A0A1S3C6G5 (uncharacterized protein LOC103497439 OS=Cucumis melo OX=3656 GN=LOC103497439 PE=4 SV=1)

HSP 1 Score: 258 bits (660), Expect = 5.82e-86
Identity = 149/166 (89.76%), Postives = 156/166 (93.98%), Query Frame = 0

Query: 1   MAST-ISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGRE 60
           MAST ISP LQIL+PRCRL+ TVRAA+VKPP ESLSA+RTRRQTLL LTATA  AVVGRE
Sbjct: 1   MASTAISPALQILRPRCRLSNTVRAAAVKPPSESLSASRTRRQTLLFLTATA--AVVGRE 60

Query: 61  NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGI 120
           NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGII AER I
Sbjct: 61  NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIIAAEREI 120

Query: 121 ETAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 165
           ETAEKEIE+AV+FGALSQAGAVAGAEVVGVL+ATSIVNGILGPE Q
Sbjct: 121 ETAEKEIETAVSFGALSQAGAVAGAEVVGVLIATSIVNGILGPEGQ 164

BLAST of Cp4.1LG16g00440 vs. TAIR 10
Match: AT2G23670.1 (homolog of Synechocystis YCF37 )

HSP 1 Score: 146.0 bits (367), Expect = 2.7e-35
Identity = 99/174 (56.90%), Postives = 118/174 (67.82%), Query Frame = 0

Query: 1   MASTISPIL-----QILQPRC--RLNITVRAA-SVKPPPESLSAARTRRQTLLILTATAT 60
           MAST+S  L       LQ RC    +++ RAA S KP   S S     R+ LL  + TA 
Sbjct: 1   MASTVSLSLLSGGSGALQARCARTAHVSPRAAHSNKPALSSFSLTGASRRNLL-FSLTAA 60

Query: 61  AAVVGRENPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGI 120
             V G +  SMAE+IPLFG+RKKLKK EEEA EIV+EGFE AEKG++        AEKG+
Sbjct: 61  TVVTGLQPASMAENIPLFGIRKKLKKAEEEAVEIVKEGFETAEKGVD-------AAEKGL 120

Query: 121 ITAERGIETAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 167
             AERG+ETAEKEI +AV+F  L+QAGAV  AE VGVLVATS+VNGILGPEAQ+
Sbjct: 121 EAAERGVETAEKEIVTAVSFNGLTQAGAVVAAEFVGVLVATSVVNGILGPEAQK 166

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022928047.11.23e-101100.00uncharacterized protein LOC111434949 [Cucurbita moschata] >XP_023512058.1 unchar... [more]
XP_022971729.12.39e-9998.79uncharacterized protein LOC111470397 [Cucurbita maxima][more]
KAG6571416.11.06e-9798.19hypothetical protein SDJN03_30331, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_004148045.11.64e-8890.96uncharacterized protein LOC101208092 [Cucumis sativus] >KGN62038.1 hypothetical ... [more]
XP_038900735.13.27e-8689.82uncharacterized protein LOC120087852 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A6J1EIT85.98e-102100.00uncharacterized protein LOC111434949 OS=Cucurbita moschata OX=3662 GN=LOC1114349... [more]
A0A6J1I9D91.16e-9998.79uncharacterized protein LOC111470397 OS=Cucurbita maxima OX=3661 GN=LOC111470397... [more]
A0A0A0LJU77.93e-8990.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292190 PE=4 SV=1[more]
A0A5D3CRC55.82e-8689.76Synechocystis YCF37 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G... [more]
A0A1S3C6G55.82e-8689.76uncharacterized protein LOC103497439 OS=Cucumis melo OX=3656 GN=LOC103497439 PE=... [more]
Match NameE-valueIdentityDescription
AT2G23670.12.7e-3556.90homolog of Synechocystis YCF37 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 69..89
NoneNo IPR availablePANTHERPTHR36734YCF37-LIKE PROTEINcoord: 1..165

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g00440.1Cp4.1LG16g00440.1mRNA