Cp4.1LG15g07620 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG15g07620
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	50S ribosomal protein L6
Location	Cp4.1LG15: 7776116 .. 7778215 (-)
RNA-Seq Expression	Cp4.1LG15g07620
Synteny	Cp4.1LG15g07620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGCCTCATTAGAGTCCACTGATCATACATACTACGGCCCAGTGTTTCTCACTGAAGCCCAAAAGTTCCAGTTCAGAATTCTGTCTGCACCTTATCCTTCTCGGCAACTCCTTGTCTGCAAGGCGCTGTGTCATCTTCTTCGGAATCGGACCCTGAAGGGGTCTCTCTCTCTATCTCTCTCGTATTGGGTGTTCTATTGGCGACTGAAAATGGCGGTCTCTTCTACTCCGTGTCTCCGTCATCGAAGTTTGATTGCTAAGTAAGTTTTTGCCTTTCTTGTCAATTTGAAAGTTTCTTGAAACTCATTGCTGATTAGAGGCGTGTCTTCCATTTTGATATAATCAGGAATTAGAAATATCTATAATTCGAGTTATTTCAAGTATACTTTTACGGGACCTTTGTGACGAACCGTGAATTTTCAATAATTCTACACAGTAGTAGTAGTAGTAGTAATGCTGGTTTGCTATGCATCTGCATATGATTTGTTTTGCATTAGGGGATCCAGAGATGAATTTTGAGCTCGCTTGTAGATGAAATTTATAGGTCATTCCGGCTTACTTATTGCAACCTAGTATTTCAATAATGGAAGTTAAGTGAAGAGTTAATCATCTATGGAGATTATCTTAATCAATATAAAAAAGGGGAAGACTGCCTAAATTGATTGGCTTCTCCTTTAGGGAACAAGCTTACCAGTTTGGTTGGATAGATCTTCATGATAAGGTGAAAGATTCAATATGGAGTTGTCTTATTGATTACGAAAGTAGCCAGCTATTAACACCAATTCTTAGTGGGAGGACGAAGTGAGGGAAAAGAATTCTGAAAGGCACCAAGAACTAGCTGATCTAATTTTTAGGTTAACTATGCATTTTCTCAGTCTATACTTTCCCCAAGTTGTTGCAGTAAACTAAGAGCATTAACAGAGCACAAACATTCTACAATTTTAACCATTTTCGTCGTTGTGGCTCAGCAATTTTCGGTCTACATTTTTGGGAGAGAAAAATGGATTCACCATTTCTACAATGCCTGTAAGTCATACTGGTTTCTTGAGGAAGACTATAGAATGCAAGGAATCACGAATTGGCAAGCAACCAATTCAAGTGCCATCCAATGTAAACATCACATTGCAGGGTCAGGATTTGAAAGTTAAGGGTCCTTTGGGAGAACTCTCAATTCTTTATCCACGAGAAGTGAAGATTGAGAGGGAAGATTCTGGGATCCTTAGGGTTAAGAAGGCACTGGAGACAAGAAGAGCCAACCAAATGCATGGCCTTTTCAGGTAAGCTCATCATGGATTTTATTTTACAATCACAGAAACCAATCAGTTTAATCTCAGTTTACTCTTCTAAAACATTTAGATTTTGTTTCTCTTCCTCTTAAGTTTTAGTTTACATGGGTTACTTGTTTTTATGTGGCTCTTCAAATTCTGAACCCCAAGATGAGTTCATGTTATGAATGCAAACAACCAGCAATTGTCCTTCTTTTGAAATCCAGATGAATGGGCCCTGATGGAAAAAGAGTTAACGTAATTGTGTCATATATGAGTATTTAAATTGATTTCCTCAGGACCCTTACGGACAATATGGTGGTAGGAGTGTCAAAGGGGTTTGAAAAGAAACTTCAATTGGTCGGTGTTGGTTATCGAGCGATGCTAGAAGGAAAAGACTTGGTATTAAATCTTGGGTTCTCTCATCCTGTTAGAATGGCCATTCCTGAAGGACTTCAAGTAAAGGTGGAAGAAAACACCAGAATTACAGTCAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCTTCCATTAGACAATGGAGGCCCCCAGAACCGTATAAGGGTAAAGGAGTGAAATATGCTGATGAAATTGTTAGAAGAAAGGAGGGGAAAGCAGGGAAGAAGAAGTGATGGTTCATAATGCATTGTTGGTTTTTCTCTGTTTTTGAAACATTTGCTTGTTTCTTTTAGTATCAGAAAGGATTATTGGCAACATACTTTATGAGAGTTCTTTTTTTACCTCCTTCCTTTTCTTGATAATTTTTTGGTTCAATATCATCATTAGTTCCACCACATTTTTATCAGTTGCGTAAATGGCACTAACTCGAAA

mRNA sequence

TGGGCCTCATTAGAGTCCACTGATCATACATACTACGGCCCAGTGTTTCTCACTGAAGCCCAAAAGTTCCAGTTCAGAATTCTGTCTGCACCTTATCCTTCTCGGCAACTCCTTGTCTGCAAGGCGCTGTGTCATCTTCTTCGGAATCGGACCCTGAAGGGGTCTCTCTCTCTATCTCTCTCGTATTGGGTGTTCTATTGGCGACTGAAAATGGCGGTCTCTTCTACTCCGTGTCTCCGTCATCGAAGTTTGATTGCTAACAATTTTCGGTCTACATTTTTGGGAGAGAAAAATGGATTCACCATTTCTACAATGCCTGTAAGTCATACTGGTTTCTTGAGGAAGACTATAGAATGCAAGGAATCACGAATTGGCAAGCAACCAATTCAAGTGCCATCCAATGTAAACATCACATTGCAGGGTCAGGATTTGAAAGTTAAGGGTCCTTTGGGAGAACTCTCAATTCTTTATCCACGAGAAGTGAAGATTGAGAGGGAAGATTCTGGGATCCTTAGGGTTAAGAAGGCACTGGAGACAAGAAGAGCCAACCAAATGCATGGCCTTTTCAGGACCCTTACGGACAATATGGTGGTAGGAGTGTCAAAGGGGTTTGAAAAGAAACTTCAATTGGTCGGTGTTGGTTATCGAGCGATGCTAGAAGGAAAAGACTTGGTATTAAATCTTGGGTTCTCTCATCCTGTTAGAATGGCCATTCCTGAAGGACTTCAAGTAAAGGTGGAAGAAAACACCAGAATTACAGTCAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCTTCCATTAGACAATGGAGGCCCCCAGAACCGTATAAGGGTAAAGGAGTGAAATATGCTGATGAAATTGTTAGAAGAAAGGAGGGGAAAGCAGGGAAGAAGAAGTGATGGTTCATAATGCATTGTTGGTTTTTCTCTGTTTTTGAAACATTTGCTTGTTTCTTTTAGTATCAGAAAGGATTATTGGCAACATACTTTATGAGAGTTCTTTTTTTACCTCCTTCCTTTTCTTGATAATTTTTTGGTTCAATATCATCATTAGTTCCACCACATTTTTATCAGTTGCGTAAATGGCACTAACTCGAAA

Coding sequence (CDS)

ATGGCGGTCTCTTCTACTCCGTGTCTCCGTCATCGAAGTTTGATTGCTAACAATTTTCGGTCTACATTTTTGGGAGAGAAAAATGGATTCACCATTTCTACAATGCCTGTAAGTCATACTGGTTTCTTGAGGAAGACTATAGAATGCAAGGAATCACGAATTGGCAAGCAACCAATTCAAGTGCCATCCAATGTAAACATCACATTGCAGGGTCAGGATTTGAAAGTTAAGGGTCCTTTGGGAGAACTCTCAATTCTTTATCCACGAGAAGTGAAGATTGAGAGGGAAGATTCTGGGATCCTTAGGGTTAAGAAGGCACTGGAGACAAGAAGAGCCAACCAAATGCATGGCCTTTTCAGGACCCTTACGGACAATATGGTGGTAGGAGTGTCAAAGGGGTTTGAAAAGAAACTTCAATTGGTCGGTGTTGGTTATCGAGCGATGCTAGAAGGAAAAGACTTGGTATTAAATCTTGGGTTCTCTCATCCTGTTAGAATGGCCATTCCTGAAGGACTTCAAGTAAAGGTGGAAGAAAACACCAGAATTACAGTCAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCTTCCATTAGACAATGGAGGCCCCCAGAACCGTATAAGGGTAAAGGAGTGAAATATGCTGATGAAATTGTTAGAAGAAAGGAGGGGAAAGCAGGGAAGAAGAAGTGA

Protein sequence

MAVSSTPCLRHRSLIANNFRSTFLGEKNGFTISTMPVSHTGFLRKTIECKESRIGKQPIQVPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK

Homology

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BLAST of Cp4.1LG15g07620 vs. ExPASy Swiss-Prot
Match: O23049 (50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL6 PE=2 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 1.3e-93
Identity = 166/212 (78.30%), Postives = 190/212 (89.62%), Query Frame = 0


Query: 20  RSTFLGEKNGFTISTMPVSHTGFLRKTIECKESRIGKQPIQVPSNVNITLQGQDLKVKGP 79
           RS FLG++N F +S+ P +  G+  KTIECKESRIGKQPI VPSNV I L+GQDLKVKGP
Sbjct: 12  RSAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQPIAVPSNVTIALEGQDLKVKGP 71

Query: 80  LGELSILYPREVKIEREDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQ 139
           LGEL++ YPREV++ +E+SG LRVKK +ETRRANQMHGLFRTLTDNMVVGVSKGFEKKL 
Sbjct: 72  LGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLI 131

Query: 140 LVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASI 199
           LVGVGYRA ++GK+LVLNLGFSHPV+M IP+ L+VKVEENTRITVSGYDK  IGQFAA++
Sbjct: 132 LVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATV 191

Query: 200 RQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 232
           R+WRPPEPYKGKGVKY+DEIVRRKEGKAGKKK
Sbjct: 192 RKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223

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BLAST of Cp4.1LG15g07620 vs. ExPASy Swiss-Prot
Match: P82193 (50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=1 SV=2)

HSP 1 Score: 335.5 bits (859), Expect = 4.8e-91
Identity = 163/217 (75.12%), Postives = 192/217 (88.48%), Query Frame = 0


Query: 15  IANNFRSTFLGEKNGFTISTMPVSHTGFLRKTIECKESRIGKQPIQVPSNVNITLQGQDL 74
           + ++ +S FLG K   + S +PV+  GF RK+++CKESRIGKQPI VP+NV I ++GQDL
Sbjct: 5   LPSHMKSVFLGMKVEISTS-VPVTRIGFWRKSVDCKESRIGKQPITVPANVAIAMEGQDL 64

Query: 75  KVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGF 134
           KVKGPLGELSI YPREV +E+++SG LRV+KA+ETRRANQMHGLFRTLTDNMVVGVSKGF
Sbjct: 65  KVKGPLGELSITYPREVLVEKQESGFLRVRKAVETRRANQMHGLFRTLTDNMVVGVSKGF 124

Query: 135 EKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQ 194
           EKKLQLVGVGYRA +EGKDL+L+LGFSHPVRMAIP+ LQVKVEENT++TVSG DK  +GQ
Sbjct: 125 EKKLQLVGVGYRATVEGKDLILSLGFSHPVRMAIPDELQVKVEENTKVTVSGRDKSVVGQ 184

Query: 195 FAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 232
           FAA+IR WRPPEPYKGKGV+Y DE+VRRKEGKAGKKK
Sbjct: 185 FAATIRSWRPPEPYKGKGVRYVDEVVRRKEGKAGKKK 220

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BLAST of Cp4.1LG15g07620 vs. ExPASy Swiss-Prot
Match: B0C1E7 (50S ribosomal protein L6 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rplF PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.6e-52
Identity = 107/179 (59.78%), Postives = 134/179 (74.86%), Query Frame = 0


Query: 52  SRIGKQPIQVPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRR 111
           SRIGK PI +P  VN+T++GQ + VKGP GELS     EV IE+ D+ ++ V +  E+R 
Sbjct: 2   SRIGKVPIPIPDKVNVTIKGQAVTVKGPKGELSREITPEVAIEQADN-LVTVTRRNESRI 61

Query: 112 ANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEG 171
           A Q HGL RTL  NMV GVSKGFEKKLQ+ GVGYRA ++G++L+LN+G+S+PV +  PEG
Sbjct: 62  ARQRHGLSRTLIANMVEGVSKGFEKKLQIQGVGYRAQVQGRNLILNVGYSNPVTIEPPEG 121

Query: 172 LQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKK 231
           +QV VE NT + VSG +K  +G  AA IR  RPPEPYKGKG++YADE VRRK GKAGKK
Sbjct: 122 VQVAVESNTNVIVSGINKEVVGNTAARIRAVRPPEPYKGKGIRYADEYVRRKVGKAGKK 179

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BLAST of Cp4.1LG15g07620 vs. ExPASy Swiss-Prot
Match: B7KI01 (50S ribosomal protein L6 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN=rplF PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 5.3e-50
Identity = 99/179 (55.31%), Postives = 126/179 (70.39%), Query Frame = 0


Query: 52  SRIGKQPIQVPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRR 111
           SRIGK+PI +P+ V + + G  + VKGP GEL    P  V +E +D G+LRV +  ++R 
Sbjct: 2   SRIGKRPITIPNKVTVNIDGSHVAVKGPKGELQRTLPTLVIVE-QDEGVLRVVRQDDSRT 61

Query: 112 ANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEG 171
           A Q HGL RTL  NMV GVSKGFEK+L++ GVGYRA  +G  L LN+G+S PV M +P G
Sbjct: 62  ARQRHGLCRTLVSNMVEGVSKGFEKRLEIQGVGYRAAAQGSKLTLNVGYSKPVEMDMPSG 121

Query: 172 LQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKK 231
           + V VE+NT IT++G DK  +G  AA IR  RPPEPYKGKG++Y  E+VRRK GK GKK
Sbjct: 122 IGVAVEKNTEITITGIDKEIVGNVAAKIRAVRPPEPYKGKGIRYKGEVVRRKAGKTGKK 179

[Close]

BLAST of Cp4.1LG15g07620 vs. ExPASy Swiss-Prot
Match: B1WQS5 (50S ribosomal protein L6 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=rplF PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 7.0e-50
Identity = 97/179 (54.19%), Postives = 127/179 (70.95%), Query Frame = 0


Query: 52  SRIGKQPIQVPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRR 111
           SRIGK+PI +P+ V I ++GQ + VKGP G L +  P EV + +E   +  V++  ++R 
Sbjct: 2   SRIGKKPIPLPNKVTIDIKGQHIAVKGPKGSLELDLPSEVTVNQEGETV-EVQRVDDSRT 61

Query: 112 ANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEG 171
           A + HGLFRTL  NM+ GVS+GFEK+L + GVGYRA  +G  L LN+G+S PV M +P+G
Sbjct: 62  ARERHGLFRTLVANMIQGVSQGFEKRLNIQGVGYRAQAQGSKLTLNVGYSKPVEMTMPQG 121

Query: 172 LQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKK 231
           + V VE NT++ VSG DK  +G  AA IR  RPPEPYKGKG++Y DE VRRK GKAGKK
Sbjct: 122 INVAVENNTQVVVSGIDKEIVGNIAAKIRGVRPPEPYKGKGIRYQDEYVRRKAGKAGKK 179

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BLAST of Cp4.1LG15g07620 vs. NCBI nr
Match: XP_023554603.1 (50S ribosomal protein L6, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 457 bits (1176), Expect = 3.79e-162
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 1   MAVSSTPCLRHRSLIANNFRSTFLGEKNGFTISTMPVSHTGFLRKTIECKESRIGKQPIQ 60
           MAVSSTPCLRHRSLIANNFRSTFLGEKNGFTISTMPVSHTGFLRKTIECKESRIGKQPIQ
Sbjct: 1   MAVSSTPCLRHRSLIANNFRSTFLGEKNGFTISTMPVSHTGFLRKTIECKESRIGKQPIQ 60

Query: 61  VPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGLFR 120
           VPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGLFR
Sbjct: 61  VPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGLFR 120

Query: 121 TLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENT 180
           TLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENT
Sbjct: 121 TLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENT 180

Query: 181 RITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231
           RITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 RITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231

[Close]

BLAST of Cp4.1LG15g07620 vs. NCBI nr
Match: XP_022952947.1 (50S ribosomal protein L6, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 453 bits (1165), Expect = 1.80e-160
Identity = 229/231 (99.13%), Postives = 229/231 (99.13%), Query Frame = 0


Query: 1   MAVSSTPCLRHRSLIANNFRSTFLGEKNGFTISTMPVSHTGFLRKTIECKESRIGKQPIQ 60
           MAVSSTPCL HRSLIANNFRSTFLGEKNGFTISTMPVSHTG LRKTIECKESRIGKQPIQ
Sbjct: 1   MAVSSTPCLHHRSLIANNFRSTFLGEKNGFTISTMPVSHTGILRKTIECKESRIGKQPIQ 60

Query: 61  VPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGLFR 120
           VPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGLFR
Sbjct: 61  VPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGLFR 120

Query: 121 TLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENT 180
           TLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENT
Sbjct: 121 TLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENT 180

Query: 181 RITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231
           RITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 RITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231

[Close]

BLAST of Cp4.1LG15g07620 vs. NCBI nr
Match: KAG6572299.1 (50S ribosomal protein L6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 452 bits (1164), Expect = 2.56e-160
Identity = 228/231 (98.70%), Postives = 229/231 (99.13%), Query Frame = 0


Query: 1   MAVSSTPCLRHRSLIANNFRSTFLGEKNGFTISTMPVSHTGFLRKTIECKESRIGKQPIQ 60
           MAVSSTPCL HRSLIANNFRSTFLGEKNGFTISTMPVSHTG LRKTIECKESRIGKQPIQ
Sbjct: 1   MAVSSTPCLHHRSLIANNFRSTFLGEKNGFTISTMPVSHTGILRKTIECKESRIGKQPIQ 60

Query: 61  VPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGLFR 120
           VPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGLFR
Sbjct: 61  VPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGLFR 120

Query: 121 TLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENT 180
           TLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENT
Sbjct: 121 TLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENT 180

Query: 181 RITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231
           RITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 181 RITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 231

[Close]

BLAST of Cp4.1LG15g07620 vs. NCBI nr
Match: XP_022969247.1 (50S ribosomal protein L6, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 449 bits (1155), Expect = 6.03e-159
Identity = 227/231 (98.27%), Postives = 228/231 (98.70%), Query Frame = 0


Query: 1   MAVSSTPCLRHRSLIANNFRSTFLGEKNGFTISTMPVSHTGFLRKTIECKESRIGKQPIQ 60
           MAVSSTPCL HRSLIANNFRSTFLGEKNGFTISTMPVSHTG LRKTIECKESRIGKQPIQ
Sbjct: 1   MAVSSTPCLHHRSLIANNFRSTFLGEKNGFTISTMPVSHTGILRKTIECKESRIGKQPIQ 60

Query: 61  VPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGLFR 120
           VPSNVNITLQGQDLKVKGPLGELSI+YPREVKIEREDSGILRVKKALETRRANQMHGLFR
Sbjct: 61  VPSNVNITLQGQDLKVKGPLGELSIIYPREVKIEREDSGILRVKKALETRRANQMHGLFR 120

Query: 121 TLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENT 180
           TLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPV MAIPEGLQVKVEENT
Sbjct: 121 TLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVIMAIPEGLQVKVEENT 180

Query: 181 RITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231
           RITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 RITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231

[Close]

BLAST of Cp4.1LG15g07620 vs. NCBI nr
Match: XP_008455431.1 (PREDICTED: 50S ribosomal protein L6, chloroplastic [Cucumis melo])

HSP 1 Score: 417 bits (1071), Expect = 4.14e-146
Identity = 211/233 (90.56%), Postives = 220/233 (94.42%), Query Frame = 0


Query: 1   MAVSSTPCLRHRSLI--ANNFRSTFLGEKNGFTISTMPVSHTGFLRKTIECKESRIGKQP 60
           MA+SS P L+  SLI   NNFRSTFLGEKNGF +S MPV H G LRKTIECKESRIGKQP
Sbjct: 1   MALSSPPSLQPPSLIHSPNNFRSTFLGEKNGFCVSAMPVCHIGLLRKTIECKESRIGKQP 60

Query: 61  IQVPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGL 120
           IQVPSNV ITLQGQDLKVKGPLGELSILYPREVKIEREDSGI+RVKKALETRRANQMHGL
Sbjct: 61  IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 120

Query: 121 FRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEE 180
           FRTLTDNMVVGVSKGFEKKLQL+GVGYRAM+EGKDLVLNLGFSHPVRMAIP+G+Q+KVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 180

Query: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

[Close]

BLAST of Cp4.1LG15g07620 vs. ExPASy TrEMBL
Match: A0A6J1GLT4 (50S ribosomal protein L6, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111455470 PE=3 SV=1)

HSP 1 Score: 453 bits (1165), Expect = 8.73e-161
Identity = 229/231 (99.13%), Postives = 229/231 (99.13%), Query Frame = 0


Query: 1   MAVSSTPCLRHRSLIANNFRSTFLGEKNGFTISTMPVSHTGFLRKTIECKESRIGKQPIQ 60
           MAVSSTPCL HRSLIANNFRSTFLGEKNGFTISTMPVSHTG LRKTIECKESRIGKQPIQ
Sbjct: 1   MAVSSTPCLHHRSLIANNFRSTFLGEKNGFTISTMPVSHTGILRKTIECKESRIGKQPIQ 60

Query: 61  VPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGLFR 120
           VPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGLFR
Sbjct: 61  VPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGLFR 120

Query: 121 TLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENT 180
           TLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENT
Sbjct: 121 TLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENT 180

Query: 181 RITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231
           RITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 RITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231

[Close]

BLAST of Cp4.1LG15g07620 vs. ExPASy TrEMBL
Match: A0A6J1HVU0 (50S ribosomal protein L6, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111468304 PE=3 SV=1)

HSP 1 Score: 449 bits (1155), Expect = 2.92e-159
Identity = 227/231 (98.27%), Postives = 228/231 (98.70%), Query Frame = 0


Query: 1   MAVSSTPCLRHRSLIANNFRSTFLGEKNGFTISTMPVSHTGFLRKTIECKESRIGKQPIQ 60
           MAVSSTPCL HRSLIANNFRSTFLGEKNGFTISTMPVSHTG LRKTIECKESRIGKQPIQ
Sbjct: 1   MAVSSTPCLHHRSLIANNFRSTFLGEKNGFTISTMPVSHTGILRKTIECKESRIGKQPIQ 60

Query: 61  VPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGLFR 120
           VPSNVNITLQGQDLKVKGPLGELSI+YPREVKIEREDSGILRVKKALETRRANQMHGLFR
Sbjct: 61  VPSNVNITLQGQDLKVKGPLGELSIIYPREVKIEREDSGILRVKKALETRRANQMHGLFR 120

Query: 121 TLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENT 180
           TLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPV MAIPEGLQVKVEENT
Sbjct: 121 TLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVIMAIPEGLQVKVEENT 180

Query: 181 RITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231
           RITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 RITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231

[Close]

BLAST of Cp4.1LG15g07620 vs. ExPASy TrEMBL
Match: A0A1S3C0W5 (50S ribosomal protein L6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495590 PE=3 SV=1)

HSP 1 Score: 417 bits (1071), Expect = 2.00e-146
Identity = 211/233 (90.56%), Postives = 220/233 (94.42%), Query Frame = 0


Query: 1   MAVSSTPCLRHRSLI--ANNFRSTFLGEKNGFTISTMPVSHTGFLRKTIECKESRIGKQP 60
           MA+SS P L+  SLI   NNFRSTFLGEKNGF +S MPV H G LRKTIECKESRIGKQP
Sbjct: 1   MALSSPPSLQPPSLIHSPNNFRSTFLGEKNGFCVSAMPVCHIGLLRKTIECKESRIGKQP 60

Query: 61  IQVPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGL 120
           IQVPSNV ITLQGQDLKVKGPLGELSILYPREVKIEREDSGI+RVKKALETRRANQMHGL
Sbjct: 61  IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 120

Query: 121 FRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEE 180
           FRTLTDNMVVGVSKGFEKKLQL+GVGYRAM+EGKDLVLNLGFSHPVRMAIP+G+Q+KVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 180

Query: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

[Close]

BLAST of Cp4.1LG15g07620 vs. ExPASy TrEMBL
Match: A0A0A0K3K9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044200 PE=3 SV=1)

HSP 1 Score: 410 bits (1053), Expect = 1.11e-143
Identity = 207/233 (88.84%), Postives = 218/233 (93.56%), Query Frame = 0


Query: 1   MAVSSTPCLRHRSLI--ANNFRSTFLGEKNGFTISTMPVSHTGFLRKTIECKESRIGKQP 60
           MA+SS P L+  + I   NNFRSTFLGEKNGF +S MP  H G LRKTIECKESRIGKQP
Sbjct: 1   MALSSPPSLQPPTSIHSPNNFRSTFLGEKNGFCVSAMPACHIGLLRKTIECKESRIGKQP 60

Query: 61  IQVPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGL 120
           IQVPS+V ITLQGQDLKVKGPLGELSILYPREVKIEREDSGI+RVKKALETRRANQMHGL
Sbjct: 61  IQVPSSVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 120

Query: 121 FRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEE 180
           FRTLTDNMVVGVSKGFEKKLQL+GVGYRAM+EGKDLVLNLGFSHPVRMAIP+G+Q+KVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 180

Query: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

[Close]

BLAST of Cp4.1LG15g07620 vs. ExPASy TrEMBL
Match: A0A6J1ERI9 (50S ribosomal protein L6, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437054 PE=3 SV=1)

HSP 1 Score: 409 bits (1052), Expect = 2.42e-143
Identity = 207/224 (92.41%), Postives = 216/224 (96.43%), Query Frame = 0


Query: 8   CLRHRSLIANNFRSTFLGEKNGFTISTMPVSHTGFLRKTIECKESRIGKQPIQVPSNVNI 67
           C++HR + + NFRSTFLGEKNGF+ STMPVSH   LRKTIECKESRIGKQPIQVPSNV I
Sbjct: 23  CVKHR-VCSINFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNVTI 82

Query: 68  TLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGLFRTLTDNMV 127
           TLQGQDLKVKGPLGELS+LYPREVKIER+DSGILRVKKALETRRANQMHGLFRTLTDNMV
Sbjct: 83  TLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDNMV 142

Query: 128 VGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGY 187
           VGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIP+GLQVKVEENTRITVSGY
Sbjct: 143 VGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGY 202

Query: 188 DKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231
           DKCAIGQFAASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 203 DKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 245

[Close]

BLAST of Cp4.1LG15g07620 vs. TAIR 10
Match: AT1G05190.1 (Ribosomal protein L6 family )

HSP 1 Score: 344.0 bits (881), Expect = 9.5e-95
Identity = 166/212 (78.30%), Postives = 190/212 (89.62%), Query Frame = 0


Query: 20  RSTFLGEKNGFTISTMPVSHTGFLRKTIECKESRIGKQPIQVPSNVNITLQGQDLKVKGP 79
           RS FLG++N F +S+ P +  G+  KTIECKESRIGKQPI VPSNV I L+GQDLKVKGP
Sbjct: 12  RSAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQPIAVPSNVTIALEGQDLKVKGP 71

Query: 80  LGELSILYPREVKIEREDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQ 139
           LGEL++ YPREV++ +E+SG LRVKK +ETRRANQMHGLFRTLTDNMVVGVSKGFEKKL 
Sbjct: 72  LGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLI 131

Query: 140 LVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASI 199
           LVGVGYRA ++GK+LVLNLGFSHPV+M IP+ L+VKVEENTRITVSGYDK  IGQFAA++
Sbjct: 132 LVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATV 191

Query: 200 RQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 232
           R+WRPPEPYKGKGVKY+DEIVRRKEGKAGKKK
Sbjct: 192 RKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223

[Close]

BLAST of Cp4.1LG15g07620 vs. TAIR 10
Match: AT2G18400.1 (ribosomal protein L6 family protein )

HSP 1 Score: 97.1 bits (240), Expect = 2.0e-20
Identity = 46/98 (46.94%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 134 FEKKLQLVGVGYRAMLE--GKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCA 193
           F + L++VGVGY+A  E  G+ L L LG+SH V +A+P  ++V   +N  +  +G DK  
Sbjct: 5   FFRFLKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGIDKQR 64

Query: 194 IGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGK 230
           + QFAA++R  +PPEPYKGKG+ Y DE+V++K+GK  K
Sbjct: 65  VHQFAATVRSCKPPEPYKGKGIMYTDEVVKKKQGKKSK 102

The following BLAST results are available for this feature:

BLAST of Cp4.1LG15g07620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23049	1.3e-93	78.30	50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL6 ...	[more]
P82193	4.8e-91	75.12	50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=...	[more]
B0C1E7	2.6e-52	59.78	50S ribosomal protein L6 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 G...	[more]
B7KI01	5.3e-50	55.31	50S ribosomal protein L6 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN...	[more]
B1WQS5	7.0e-50	54.19	50S ribosomal protein L6 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) O...	[more]

BLAST of Cp4.1LG15g07620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023554603.1	3.79e-162	100.00	50S ribosomal protein L6, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022952947.1	1.80e-160	99.13	50S ribosomal protein L6, chloroplastic-like [Cucurbita moschata]	[more]
KAG6572299.1	2.56e-160	98.70	50S ribosomal protein L6, chloroplastic, partial [Cucurbita argyrosperma subsp. ...	[more]
XP_022969247.1	6.03e-159	98.27	50S ribosomal protein L6, chloroplastic-like [Cucurbita maxima]	[more]
XP_008455431.1	4.14e-146	90.56	PREDICTED: 50S ribosomal protein L6, chloroplastic [Cucumis melo]	[more]

BLAST of Cp4.1LG15g07620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GLT4	8.73e-161	99.13	50S ribosomal protein L6, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1HVU0	2.92e-159	98.27	50S ribosomal protein L6, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A1S3C0W5	2.00e-146	90.56	50S ribosomal protein L6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495590 ...	[more]
A0A0A0K3K9	1.11e-143	88.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044200 PE=3 SV=1	[more]
A0A6J1ERI9	2.42e-143	92.41	50S ribosomal protein L6, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662...	[more]

BLAST of Cp4.1LG15g07620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05190.1	9.5e-95	78.30	Ribosomal protein L6 family	[more]
AT2G18400.1	2.0e-20	46.94	ribosomal protein L6 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019906	Ribosomal protein L6, bacterial-type	PRINTS	PR00059	RIBOSOMALL6	coord: 122..147 score: 61.66 coord: 192..213 score: 66.42 coord: 150..166 score: 49.15
IPR019906	Ribosomal protein L6, bacterial-type	TIGRFAM	TIGR03654	TIGR03654	coord: 52..227 e-value: 3.8E-71 score: 236.4
IPR019906	Ribosomal protein L6, bacterial-type	HAMAP	MF_01365_B	Ribosomal_L6_B	coord: 51..227 score: 37.034218
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 134..231 e-value: 4.9E-41 score: 140.8
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 50..133 e-value: 2.1E-25 score: 91.0
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 52..133
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 134..227
IPR020040	Ribosomal protein L6, alpha-beta domain	PFAM	PF00347	Ribosomal_L6	coord: 141..215 e-value: 3.5E-19 score: 69.3 coord: 61..133 e-value: 1.5E-14 score: 54.4
IPR000702	Ribosomal protein L6	PANTHER	PTHR11655	60S/50S RIBOSOMAL PROTEIN L6/L9	coord: 18..231
None	No IPR available	PANTHER	PTHR11655:SF38	BNAA10G03220D PROTEIN	coord: 18..231
IPR002358	Ribosomal protein L6, conserved site	PROSITE	PS00525	RIBOSOMAL_L6_1	coord: 205..213

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG15g07620.1	Cp4.1LG15g07620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome