Cp4.1LG15g02040 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG15g02040
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	transcription factor bHLH71-like
Location	Cp4.1LG15: 1706960 .. 1709786 (+)
RNA-Seq Expression	Cp4.1LG15g02040
Synteny	Cp4.1LG15g02040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCAATCCAATTCTGCCCCTCTCACGTGCACCTTATATACCTCTTTCCTTTTACATTACCCTTTCAACAATTCCTACACTTCTCTTCCCATTCATCCCTTCTCTCCCTATCTTTCTTCAACACAATTCCTAACCAAAAACCAAACAAAATGAGTCTTGATGCTCTTTCTTCCAATGACTTCTTCAACTTCATCATCTACGACACCATCTCCGCTATCCCCAACACCTCCCCCGTCCTCCACGACTCGTCGGAGAACACATTTTTCTCCGACGACACGTGTTCGAGACATCAAGATCACCAACATGGGCTTGAAGGAAGCTTGAAACCCAATAGAAAACGCCGTCCGAGTGAGTCGGAAAGCCTCCGGACGGCGTCGACACGACAAGGGAAGAAGAAGAGGAAGAGAAAACCAAGGGTTTGTAAGAACAAAGAGGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGCCGCAAACAGATGAATGAGCATCTTTCAGTGTTACGTTCACTCATGCCCGAATCCTATGTTCAAAGGGTTTGTTTTCTTCTATTTGTCTCTTTCATTACTAAAATTTGGACCCCATTTCTGAGATTTGATTAAACTTCATAATTATGCCATTAAAACTCCTACCCACCTTCTTCTTTTGCTCATATCTTCGTTACTAATCTCAATTATTTAGCCTAAACATAGAATTCAATTATTACTGCTAAAAATTGACCTCTGCTCCTAACCCTATTCATAATTGCATGGCTTGGCTACATTTTTGTTCAAGAACATTTCAAAAAATGACAGATTCATAGGAAGCAGAGTTTGTAAGGCCCTAAAATATGAGACGTACCTTTTTGATAGTAATCTTTCATGAACTGATATCAGTTTTATGCGATGAACATATGAAGGGTGACCAAGCATCCATAGTAGGAGGAGCGGTTGAGTTTGTGAAGGAATTGGAGCATCTTCTATCAACTTTGGAAGCCAAGAAGCTGCAAGTTTTACAGAAAGAAGTTGATCATCAAGAACAAGAGATTAATGATAATAAGTTGTTTTCATTTGGAAGTTTGTTGATGAATAATTCAGATCATAATTATTGTTCCCAATACTCTACCAAATACACTTCCAAATCCAAGGCTTCTTCAGCTGATATTGAAGTTACTTTGATTGAAACTCATGCAAACCTTAGAATCCTATCAACAAGAAGCCATAGACAGCTCTTGAAGCTCATTGCTGGTTTGCAGGCTCTTCGTCTCACCATTCTTCATCTCAGTCTTACTGATTTTCATCCATTGGTTCTTTACTCCATCAGCCTCAAGGTACTTACTTAATGTTTCAAACTTTATTGTGAGATCTCACATCGGTTGGAGAGGGGAACGGAACATTCTTTATAAGAGTGTGGAAAGCTCTCTCTAGCAGACGCGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGGGAAAGCTCAAAGAGAACAATATTGGCTAGCGGTGGGCTCCGATACCATTAGATCTCACATTGGTTGGAGAGGGGTACGAAACGTTCCTTATAAGGGTGTGGAAACCTCTCCTTAGTAGACACGTTTTACAACCTTGAGGGCAAGTCCGGAATGGAAGGCCCAAAGAAGACAATATTTGCTAACAGTGGGTTTGAGCTGTTACAAATGGTATTAGAACCAGACATCGAGAAGTGTGCCAATAAGAATGCTGGGACCCAAGGGAGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGAAACGAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGTGTTTTAAAACCTTGAGGGGAAGCCCGGAATGGAAAGCCCAAAGCTAACGATGGGCTTGGGCTGTTACAAATGGTATCAGAGTCAGGCACTGAACAGTGTGCCAGCGAGGACGCTGGGCCCCAAAGGGTGGGTGGATTGTGAGATCACACATCAGTTGAAGAGGGGAACGAAACATTCCTTATAAGGGTGTGGAAATCTCTCTCTAGCAAACATGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATAATGCTAGCAGTGGGCTTAGGCCGTTACACTTATCAAATTTTTCATCCTCTAATTACCATTTTATAGCCGTCTCTAAACTTTCAAAACGGTCTAGATACGAAACTTCTTTATCAAAATGGAATAAGTCAAAGTTCAAAGTCAGAGTTCGGGGCAAGAATGAAGATTAAACTTACGACGTTTTGATGAAACAATGAAAATGCAGGTTGAAGAAGGATGCCAACTGAGATCAGTAGATGACATAGCAGCAGCAGCACATCATTTGGTGAGAATAATTGAGGAAGAAACTATGTTATGTTAAAATGTAAACAATTCAAAAGCCAAAACAAAGAAAAAGAAGAGGTAAGAGCATTGAAATGGAATCAGCCATTAAAATGCCAAGTTCACTGTGTGTGTGCATGTGGCTTGGTTTGATGTAATTAGTAAATGAATGTGTTTTTATGTAAGATGATATTGTTTTGTAGCTTTCAAGGGTTTGTCTTATTTGCTTTAGTTTCTCTTTTTTCTTGAGACCACAGACAAGAAGAGAGTGACAGATGAGAAGAAAAAGTTGTCGAAGGGATTGGTTTTGGGTTCATCATTATCTTCCTGTGCAATTTCCTCTCCCTTCCCTTCCCCTTTTCATACCTCCTTTCATCATCCAAGTTTAGTTAGGGTTCTTGATGACCCACAATGCCAAATAGTGAGTAAATTTCTTTTTGGGAAGGTAAGAAGTCAATGTCCAAGATAAATAAAAGTAATTGAAACGAGAGATTTGTTTACA

mRNA sequence

AGCAATCCAATTCTGCCCCTCTCACGTGCACCTTATATACCTCTTTCCTTTTACATTACCCTTTCAACAATTCCTACACTTCTCTTCCCATTCATCCCTTCTCTCCCTATCTTTCTTCAACACAATTCCTAACCAAAAACCAAACAAAATGAGTCTTGATGCTCTTTCTTCCAATGACTTCTTCAACTTCATCATCTACGACACCATCTCCGCTATCCCCAACACCTCCCCCGTCCTCCACGACTCGTCGGAGAACACATTTTTCTCCGACGACACGTGTTCGAGACATCAAGATCACCAACATGGGCTTGAAGGAAGCTTGAAACCCAATAGAAAACGCCGTCCGAGTGAGTCGGAAAGCCTCCGGACGGCGTCGACACGACAAGGGAAGAAGAAGAGGAAGAGAAAACCAAGGGTTTGTAAGAACAAAGAGGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGCCGCAAACAGATGAATGAGCATCTTTCAGTGTTACGTTCACTCATGCCCGAATCCTATGTTCAAAGGGTTGAAGAAGGATGCCAACTGAGATCAGTAGATGACATAGCAGCAGCAGCACATCATTTGGTGAGAATAATTGAGGAAGAAACTATGTTATGTTAAAATGTAAACAATTCAAAAGCCAAAACAAAGAAAAAGAAGAGGTAAGAGCATTGAAATGGAATCAGCCATTAAAATGCCAAGTTCACTGTGTGTGTGCATGTGGCTTGGTTTGATGTAATTAGTAAATGAATGTGTTTTTATGTAAGATGATATTGTTTTGTAGCTTTCAAGGGTTTGTCTTATTTGCTTTAGTTTCTCTTTTTTCTTGAGACCACAGACAAGAAGAGAGTGACAGATGAGAAGAAAAAGTTGTCGAAGGGATTGGTTTTGGGTTCATCATTATCTTCCTGTGCAATTTCCTCTCCCTTCCCTTCCCCTTTTCATACCTCCTTTCATCATCCAAGTTTAGTTAGGGTTCTTGATGACCCACAATGCCAAATAGTGAGTAAATTTCTTTTTGGGAAGGTAAGAAGTCAATGTCCAAGATAAATAAAAGTAATTGAAACGAGAGATTTGTTTACA

Coding sequence (CDS)

ATGAGTCTTGATGCTCTTTCTTCCAATGACTTCTTCAACTTCATCATCTACGACACCATCTCCGCTATCCCCAACACCTCCCCCGTCCTCCACGACTCGTCGGAGAACACATTTTTCTCCGACGACACGTGTTCGAGACATCAAGATCACCAACATGGGCTTGAAGGAAGCTTGAAACCCAATAGAAAACGCCGTCCGAGTGAGTCGGAAAGCCTCCGGACGGCGTCGACACGACAAGGGAAGAAGAAGAGGAAGAGAAAACCAAGGGTTTGTAAGAACAAAGAGGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGCCGCAAACAGATGAATGAGCATCTTTCAGTGTTACGTTCACTCATGCCCGAATCCTATGTTCAAAGGGTTGAAGAAGGATGCCAACTGAGATCAGTAGATGACATAGCAGCAGCAGCACATCATTTGGTGAGAATAATTGAGGAAGAAACTATGTTATGTTAA

Protein sequence

MSLDALSSNDFFNFIIYDTISAIPNTSPVLHDSSENTFFSDDTCSRHQDHQHGLEGSLKPNRKRRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRVEEGCQLRSVDDIAAAAHHLVRIIEEETMLC

Homology

[Close]

BLAST of Cp4.1LG15g02040 vs. ExPASy Swiss-Prot
Match: Q56XR0 (Transcription factor bHLH71 OS=Arabidopsis thaliana OX=3702 GN=BHLH71 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.1e-20
Identity = 69/162 (42.59%), Postives = 96/162 (59.26%), Query Frame = 0


Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPV-LHDSSEN-TFFSDDTCSRHQDHQHGLEGSL 60
           M+L+ALSSN   NF++ +T+S  P  S V L    EN    S +T S   + +       
Sbjct: 1   MTLEALSSNGLLNFLLSETLSPTPFKSLVDLEPLPENDVIISKNTISEISNQE------- 60

Query: 61  KPNRKRRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEH 120
            P  +R+P         +T +GKK+R+RKPRVCKN+EEAE QRMTHIAVERNRR+QMN+H
Sbjct: 61  -PPPQRQP--------PATNRGKKRRRRKPRVCKNEEEAENQRMTHIAVERNRRRQMNQH 120

Query: 121 LSVLRSLMPESYVQRVEEGCQLRSVDDIAAAAHHLVRIIEEE 161
           LSVLRSLMP+ +  + ++   +    D      H +  +E +
Sbjct: 121 LSVLRSLMPQPFAHKGDQASIVGGAIDFIKELEHKLLSLEAQ 146

[Close]

BLAST of Cp4.1LG15g02040 vs. ExPASy Swiss-Prot
Match: Q9SK91 (Transcription factor bHLH94 OS=Arabidopsis thaliana OX=3702 GN=BHLH94 PE=1 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 7.5e-14
Identity = 41/77 (53.25%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 82  KKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRVEEGCQLR 141
           ++++R+ R CKNKEE E QRMTHIAVERNRRKQMNE+L+VLRSLMP SY QR ++   + 
Sbjct: 95  RRKRRRTRNCKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYAQRGDQASIVG 154

Query: 142 SVDDIAAAAHHLVRIIE 159
              +      H+++ +E
Sbjct: 155 GAINYVKELEHILQSME 171

[Close]

BLAST of Cp4.1LG15g02040 vs. ExPASy Swiss-Prot
Match: Q56YJ8 (Transcription factor FAMA OS=Arabidopsis thaliana OX=3702 GN=FAMA PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.8e-12
Identity = 45/93 (48.39%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 68  ESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMP 127
           E    +  + ++ K KRKR  R  K  EE E+QRMTHIAVERNRRKQMNEHL VLRSLMP
Sbjct: 164 EDRENKNVTKKEVKSKRKR-ARTSKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMP 223

Query: 128 ESYVQRVEEGCQLRSVDDIAAAAHHLVRIIEEE 161
            SYVQR ++   +    +       L++ +E +
Sbjct: 224 GSYVQRGDQASIIGGAIEFVRELEQLLQCLESQ 255

[Close]

BLAST of Cp4.1LG15g02040 vs. ExPASy Swiss-Prot
Match: Q9M128 (Transcription factor bHLH57 OS=Arabidopsis thaliana OX=3702 GN=BHLH57 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.1e-12
Identity = 51/110 (46.36%), Postives = 69/110 (62.73%), Query Frame = 0


Query: 57  SLKPNRKRRPSESES-LRTASTRQG----KKKRKRK-PRVCKNKEEAETQRMTHIAVERN 116
           +L+ N KR P +++   +   T  G    K+KRKRK  R  KNK+E E QRMTHIAVERN
Sbjct: 64  TLETNIKRDPGQTDDPEKDPRTENGAVTVKEKRKRKRTRAPKNKDEVENQRMTHIAVERN 123

Query: 117 RRKQMNEHLSVLRSLMPESYVQRVEEGCQLRSVDDIAAAAHHLVRIIEEE 161
           RR+QMNEHL+ LRSLMP S++QR ++   +    D       L++ +E E
Sbjct: 124 RRRQMNEHLNSLRSLMPPSFLQRGDQASIVGGAIDFIKELEQLLQSLEAE 173

[Close]

BLAST of Cp4.1LG15g02040 vs. ExPASy Swiss-Prot
Match: Q9C7T4 (Transcription factor bHLH96 OS=Arabidopsis thaliana OX=3702 GN=BHLH96 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.1e-12
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 80  GKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRVEEGCQ 139
           G ++++R+ R  KNKEE E QRMTHIAVERNRRKQMNE+L+VLRSLMP  Y QR ++   
Sbjct: 103 GGRRKRRRTRSSKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPYYAQRGDQASI 162

Query: 140 L-RSVDDIAAAAHHL 154
           +  +++ +    HHL
Sbjct: 163 VGGAINYLKELEHHL 177

[Close]

BLAST of Cp4.1LG15g02040 vs. NCBI nr
Match: KAG7011385.1 (Transcription factor bHLH71, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 306 bits (784), Expect = 1.35e-104
Identity = 159/164 (96.95%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPVLHDSSENTFFSDDTCSRHQDHQHGLEGSLKP 60
           MSLDALSSNDFFNFIIYDTISAIPNTSP+LHDSSENTFFSDDTCSRHQDHQHGLEGSLKP
Sbjct: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPILHDSSENTFFSDDTCSRHQDHQHGLEGSLKP 60

Query: 61  NRKRRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLS 120
           +RK RPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLS
Sbjct: 61  DRKCRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLS 120

Query: 121 VLRSLMPESYVQRVEEGCQLRSVDDIAAAAHHLVRIIEEETMLC 164
           VLRSLMPESYVQRVEEGCQLRSV+DIAAAAHH+VRIIEEETMLC
Sbjct: 121 VLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIEEETMLC 164

[Close]

BLAST of Cp4.1LG15g02040 vs. NCBI nr
Match: KAG6571656.1 (Transcription factor basic helix-loop-helix 94, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 255 bits (652), Expect = 1.64e-82
Identity = 135/162 (83.33%), Postives = 144/162 (88.89%), Query Frame = 0


Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPVLHDSSENTFFSDDTCSRHQDHQHGLEGSLKP 60
           MSLDALSSNDFFNFIIYDTISAIPNTSPVLHDSSENTFFSDDTCSRHQDHQHGLEGSLKP
Sbjct: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPVLHDSSENTFFSDDTCSRHQDHQHGLEGSLKP 60

Query: 61  NRKRRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLS 120
           +RKRRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLS
Sbjct: 61  DRKRRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLS 120

Query: 121 VLRSLMPESYVQRVEEGCQLRSVDDIAAAAHHLVRIIEEETM 162
           VLRSLMPESYVQR ++   +    +      HL+  +E + +
Sbjct: 121 VLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKL 162

[Close]

BLAST of Cp4.1LG15g02040 vs. NCBI nr
Match: XP_023554782.1 (transcription factor bHLH71-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 257 bits (657), Expect = 1.88e-82
Identity = 136/162 (83.95%), Postives = 144/162 (88.89%), Query Frame = 0


Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPVLHDSSENTFFSDDTCSRHQDHQHGLEGSLKP 60
           MSLDALSSNDFFNFIIYDTISAIPNTSPVLHDSSENTFFSDDTCSRHQDHQHGLEGSLKP
Sbjct: 62  MSLDALSSNDFFNFIIYDTISAIPNTSPVLHDSSENTFFSDDTCSRHQDHQHGLEGSLKP 121

Query: 61  NRKRRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLS 120
           NRKRRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLS
Sbjct: 122 NRKRRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLS 181

Query: 121 VLRSLMPESYVQRVEEGCQLRSVDDIAAAAHHLVRIIEEETM 162
           VLRSLMPESYVQR ++   +    +      HL+  +E + +
Sbjct: 182 VLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKL 223

[Close]

BLAST of Cp4.1LG15g02040 vs. NCBI nr
Match: XP_022963757.1 (transcription factor bHLH71-like [Cucurbita moschata])

HSP 1 Score: 253 bits (646), Expect = 1.33e-81
Identity = 134/162 (82.72%), Postives = 143/162 (88.27%), Query Frame = 0


Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPVLHDSSENTFFSDDTCSRHQDHQHGLEGSLKP 60
           MSLDALSSNDFFNFIIYDTISAIPNTSPVLHDSSENTFFSDDTCSRHQDHQHGLEGSLKP
Sbjct: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPVLHDSSENTFFSDDTCSRHQDHQHGLEGSLKP 60

Query: 61  NRKRRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLS 120
           +RKRRPSE ESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLS
Sbjct: 61  DRKRRPSELESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLS 120

Query: 121 VLRSLMPESYVQRVEEGCQLRSVDDIAAAAHHLVRIIEEETM 162
           VLRSLMPESYVQR ++   +    +      HL+  +E + +
Sbjct: 121 VLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKL 162

[Close]

BLAST of Cp4.1LG15g02040 vs. NCBI nr
Match: XP_022967282.1 (transcription factor bHLH71-like [Cucurbita maxima])

HSP 1 Score: 243 bits (619), Expect = 1.05e-76
Identity = 130/162 (80.25%), Postives = 138/162 (85.19%), Query Frame = 0


Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPVLHDSSENTFFSDDTCSRHQDHQHGLEGSLKP 60
           MSLDALSSNDFFNFIIYDTISAIPNTS V HDSSENTFFSDDTCSRHQDHQHG EG LKP
Sbjct: 62  MSLDALSSNDFFNFIIYDTISAIPNTSLVFHDSSENTFFSDDTCSRHQDHQHGFEGCLKP 121

Query: 61  NRKRRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLS 120
           NRKRRPSESESLRTA TRQGKKKRKRKPRV KNKEEAETQRMTHIAVERNRRKQMNEHLS
Sbjct: 122 NRKRRPSESESLRTAPTRQGKKKRKRKPRVSKNKEEAETQRMTHIAVERNRRKQMNEHLS 181

Query: 121 VLRSLMPESYVQRVEEGCQLRSVDDIAAAAHHLVRIIEEETM 162
           VLRSLMPESYVQR ++   +    +      HL+  +E + +
Sbjct: 182 VLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKL 223

[Close]

BLAST of Cp4.1LG15g02040 vs. ExPASy TrEMBL
Match: A0A6J1HG33 (transcription factor bHLH71-like OS=Cucurbita moschata OX=3662 GN=LOC111463954 PE=4 SV=1)

HSP 1 Score: 253 bits (646), Expect = 6.44e-82
Identity = 134/162 (82.72%), Postives = 143/162 (88.27%), Query Frame = 0


Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPVLHDSSENTFFSDDTCSRHQDHQHGLEGSLKP 60
           MSLDALSSNDFFNFIIYDTISAIPNTSPVLHDSSENTFFSDDTCSRHQDHQHGLEGSLKP
Sbjct: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPVLHDSSENTFFSDDTCSRHQDHQHGLEGSLKP 60

Query: 61  NRKRRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLS 120
           +RKRRPSE ESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLS
Sbjct: 61  DRKRRPSELESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLS 120

Query: 121 VLRSLMPESYVQRVEEGCQLRSVDDIAAAAHHLVRIIEEETM 162
           VLRSLMPESYVQR ++   +    +      HL+  +E + +
Sbjct: 121 VLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKL 162

[Close]

BLAST of Cp4.1LG15g02040 vs. ExPASy TrEMBL
Match: A0A6J1HQE1 (transcription factor bHLH71-like OS=Cucurbita maxima OX=3661 GN=LOC111466851 PE=4 SV=1)

HSP 1 Score: 243 bits (619), Expect = 5.06e-77
Identity = 130/162 (80.25%), Postives = 138/162 (85.19%), Query Frame = 0


Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPVLHDSSENTFFSDDTCSRHQDHQHGLEGSLKP 60
           MSLDALSSNDFFNFIIYDTISAIPNTS V HDSSENTFFSDDTCSRHQDHQHG EG LKP
Sbjct: 62  MSLDALSSNDFFNFIIYDTISAIPNTSLVFHDSSENTFFSDDTCSRHQDHQHGFEGCLKP 121

Query: 61  NRKRRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLS 120
           NRKRRPSESESLRTA TRQGKKKRKRKPRV KNKEEAETQRMTHIAVERNRRKQMNEHLS
Sbjct: 122 NRKRRPSESESLRTAPTRQGKKKRKRKPRVSKNKEEAETQRMTHIAVERNRRKQMNEHLS 181

Query: 121 VLRSLMPESYVQRVEEGCQLRSVDDIAAAAHHLVRIIEEETM 162
           VLRSLMPESYVQR ++   +    +      HL+  +E + +
Sbjct: 182 VLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKL 223

[Close]

BLAST of Cp4.1LG15g02040 vs. ExPASy TrEMBL
Match: A0A6J1ESZ0 (transcription factor bHLH71-like OS=Cucurbita moschata OX=3662 GN=LOC111437434 PE=4 SV=1)

HSP 1 Score: 168 bits (425), Expect = 1.48e-48
Identity = 102/168 (60.71%), Postives = 121/168 (72.02%), Query Frame = 0


Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPVLHDSSENTFFSDDTCSRHQD-HQHG-LEGSL 60
           MS+DALSSND FN IIYD IS  PNTS  + DSSE TFFSD+   +HQD HQHG LE   
Sbjct: 1   MSIDALSSNDLFNLIIYDAISPTPNTSHGICDSSETTFFSDEKGLKHQDNHQHGTLEHRP 60

Query: 61  KPN--RKRRPSESESLRTAST--RQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQ 120
           KPN  RKR P+E+ES    +   +QGKKKRKRKP+ CKNKEEAETQRMTHIAVERNRRK 
Sbjct: 61  KPNLARKRHPNEAESSNWGAVGLQQGKKKRKRKPKACKNKEEAETQRMTHIAVERNRRKL 120

Query: 121 MNEHLSVLRSLMPESYVQRVEEGCQLRSVDDIAAAAHHLVRIIEEETM 162
           M+EHLSVLRSLMPESYVQR ++   +    +      H++  +E + +
Sbjct: 121 MSEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHVLSTLEAKKL 168

[Close]

BLAST of Cp4.1LG15g02040 vs. ExPASy TrEMBL
Match: A0A6J1KA87 (transcription factor bHLH71-like OS=Cucurbita maxima OX=3661 GN=LOC111491514 PE=4 SV=1)

HSP 1 Score: 164 bits (414), Expect = 6.65e-47
Identity = 100/168 (59.52%), Postives = 120/168 (71.43%), Query Frame = 0


Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPVLHDSSENTFFSDDTCSRHQDH-QHG-LEGSL 60
           MS+DALSSND FN IIYD IS  PNTS  + DSSE TFFS+    +HQDH QHG LE   
Sbjct: 1   MSIDALSSNDLFNLIIYDAISPTPNTSHGVCDSSETTFFSNQKGLKHQDHHQHGTLEHRP 60

Query: 61  KPN--RKRRPSESESLRTAST--RQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQ 120
           KPN  RKR P+E+ES    +   +QGK+KRKRKP+ CKNKEEAETQRMTHIAVERNRRK 
Sbjct: 61  KPNLARKRHPNEAESSNWGAVGLQQGKRKRKRKPKACKNKEEAETQRMTHIAVERNRRKL 120

Query: 121 MNEHLSVLRSLMPESYVQRVEEGCQLRSVDDIAAAAHHLVRIIEEETM 162
           M+EHLSVLRSLMPESYVQR ++   +    +      H++  +E + +
Sbjct: 121 MSEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHVLSTLEAKKL 168

[Close]

BLAST of Cp4.1LG15g02040 vs. ExPASy TrEMBL
Match: A0A1S3CRM4 (transcription factor bHLH71 OS=Cucumis melo OX=3656 GN=LOC103503552 PE=4 SV=1)

HSP 1 Score: 164 bits (414), Expect = 1.06e-46
Identity = 104/175 (59.43%), Postives = 116/175 (66.29%), Query Frame = 0


Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTS-PVLHDSSENTFFSDDTCSRHQDHQHGLEGSLK 60
           MSLDALSSND FNFIIYDTISA PN   P  HDSSENTF SDD CS             K
Sbjct: 1   MSLDALSSNDLFNFIIYDTISATPNNFVPHGHDSSENTFLSDDKCS-------------K 60

Query: 61  PN-RKRRPSESE-----------SLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAV 120
           PN RKR PSE E           +  T +T+ GKKKRKRK +VCKNKEEAETQRMTHIAV
Sbjct: 61  PNSRKRCPSEVEISNRVVVPLSTTTTTTTTQHGKKKRKRKAKVCKNKEEAETQRMTHIAV 120

Query: 121 ERNRRKQMNEHLSVLRSLMPESYVQRVEEGCQLRSVDDIAAAAHHLVRIIEEETM 162
           ERNRRKQMNEHLSVLRSLMPESYVQR ++   +    +      HL+  +E + +
Sbjct: 121 ERNRRKQMNEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKL 162

[Close]

BLAST of Cp4.1LG15g02040 vs. TAIR 10
Match: AT5G46690.1 (beta HLH protein 71 )

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-21
Identity = 69/162 (42.59%), Postives = 96/162 (59.26%), Query Frame = 0


Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPV-LHDSSEN-TFFSDDTCSRHQDHQHGLEGSL 60
           M+L+ALSSN   NF++ +T+S  P  S V L    EN    S +T S   + +       
Sbjct: 1   MTLEALSSNGLLNFLLSETLSPTPFKSLVDLEPLPENDVIISKNTISEISNQE------- 60

Query: 61  KPNRKRRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEH 120
            P  +R+P         +T +GKK+R+RKPRVCKN+EEAE QRMTHIAVERNRR+QMN+H
Sbjct: 61  -PPPQRQP--------PATNRGKKRRRRKPRVCKNEEEAENQRMTHIAVERNRRRQMNQH 120

Query: 121 LSVLRSLMPESYVQRVEEGCQLRSVDDIAAAAHHLVRIIEEE 161
           LSVLRSLMP+ +  + ++   +    D      H +  +E +
Sbjct: 121 LSVLRSLMPQPFAHKGDQASIVGGAIDFIKELEHKLLSLEAQ 146

[Close]

BLAST of Cp4.1LG15g02040 vs. TAIR 10
Match: AT1G22490.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 78.6 bits (192), Expect = 5.3e-15
Identity = 41/77 (53.25%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 82  KKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRVEEGCQLR 141
           ++++R+ R CKNKEE E QRMTHIAVERNRRKQMNE+L+VLRSLMP SY QR ++   + 
Sbjct: 95  RRKRRRTRNCKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYAQRGDQASIVG 154

Query: 142 SVDDIAAAAHHLVRIIE 159
              +      H+++ +E
Sbjct: 155 GAINYVKELEHILQSME 171

[Close]

BLAST of Cp4.1LG15g02040 vs. TAIR 10
Match: AT3G24140.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-13
Identity = 45/93 (48.39%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 68  ESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMP 127
           E    +  + ++ K KRKR  R  K  EE E+QRMTHIAVERNRRKQMNEHL VLRSLMP
Sbjct: 164 EDRENKNVTKKEVKSKRKR-ARTSKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMP 223

Query: 128 ESYVQRVEEGCQLRSVDDIAAAAHHLVRIIEEE 161
            SYVQR ++   +    +       L++ +E +
Sbjct: 224 GSYVQRGDQASIIGGAIEFVRELEQLLQCLESQ 255

[Close]

BLAST of Cp4.1LG15g02040 vs. TAIR 10
Match: AT1G72210.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 72.8 bits (177), Expect = 2.9e-13
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 80  GKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRVEEGCQ 139
           G ++++R+ R  KNKEE E QRMTHIAVERNRRKQMNE+L+VLRSLMP  Y QR ++   
Sbjct: 103 GGRRKRRRTRSSKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPYYAQRGDQASI 162

Query: 140 L-RSVDDIAAAAHHL 154
           +  +++ +    HHL
Sbjct: 163 VGGAINYLKELEHHL 177

[Close]

BLAST of Cp4.1LG15g02040 vs. TAIR 10
Match: AT4G01460.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 72.8 bits (177), Expect = 2.9e-13
Identity = 51/110 (46.36%), Postives = 69/110 (62.73%), Query Frame = 0


Query: 57  SLKPNRKRRPSESES-LRTASTRQG----KKKRKRK-PRVCKNKEEAETQRMTHIAVERN 116
           +L+ N KR P +++   +   T  G    K+KRKRK  R  KNK+E E QRMTHIAVERN
Sbjct: 64  TLETNIKRDPGQTDDPEKDPRTENGAVTVKEKRKRKRTRAPKNKDEVENQRMTHIAVERN 123

Query: 117 RRKQMNEHLSVLRSLMPESYVQRVEEGCQLRSVDDIAAAAHHLVRIIEEE 161
           RR+QMNEHL+ LRSLMP S++QR ++   +    D       L++ +E E
Sbjct: 124 RRRQMNEHLNSLRSLMPPSFLQRGDQASIVGGAIDFIKELEQLLQSLEAE 173

The following BLAST results are available for this feature:

BLAST of Cp4.1LG15g02040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q56XR0	4.1e-20	42.59	Transcription factor bHLH71 OS=Arabidopsis thaliana OX=3702 GN=BHLH71 PE=1 SV=1	[more]
Q9SK91	7.5e-14	53.25	Transcription factor bHLH94 OS=Arabidopsis thaliana OX=3702 GN=BHLH94 PE=1 SV=2	[more]
Q56YJ8	1.8e-12	48.39	Transcription factor FAMA OS=Arabidopsis thaliana OX=3702 GN=FAMA PE=1 SV=1	[more]
Q9M128	4.1e-12	46.36	Transcription factor bHLH57 OS=Arabidopsis thaliana OX=3702 GN=BHLH57 PE=1 SV=1	[more]
Q9C7T4	4.1e-12	54.67	Transcription factor bHLH96 OS=Arabidopsis thaliana OX=3702 GN=BHLH96 PE=1 SV=1	[more]

BLAST of Cp4.1LG15g02040 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011385.1	1.35e-104	96.95	Transcription factor bHLH71, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
KAG6571656.1	1.64e-82	83.33	Transcription factor basic helix-loop-helix 94, partial [Cucurbita argyrosperma ...	[more]
XP_023554782.1	1.88e-82	83.95	transcription factor bHLH71-like [Cucurbita pepo subsp. pepo]	[more]
XP_022963757.1	1.33e-81	82.72	transcription factor bHLH71-like [Cucurbita moschata]	[more]
XP_022967282.1	1.05e-76	80.25	transcription factor bHLH71-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG15g02040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HG33	6.44e-82	82.72	transcription factor bHLH71-like OS=Cucurbita moschata OX=3662 GN=LOC111463954 P...	[more]
A0A6J1HQE1	5.06e-77	80.25	transcription factor bHLH71-like OS=Cucurbita maxima OX=3661 GN=LOC111466851 PE=...	[more]
A0A6J1ESZ0	1.48e-48	60.71	transcription factor bHLH71-like OS=Cucurbita moschata OX=3662 GN=LOC111437434 P...	[more]
A0A6J1KA87	6.65e-47	59.52	transcription factor bHLH71-like OS=Cucurbita maxima OX=3661 GN=LOC111491514 PE=...	[more]
A0A1S3CRM4	1.06e-46	59.43	transcription factor bHLH71 OS=Cucumis melo OX=3656 GN=LOC103503552 PE=4 SV=1	[more]

BLAST of Cp4.1LG15g02040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46690.1	2.9e-21	42.59	beta HLH protein 71	[more]
AT1G22490.1	5.3e-15	53.25	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G24140.1	1.3e-13	48.39	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G72210.1	2.9e-13	54.67	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G01460.1	2.9e-13	46.36	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 100..127 e-value: 9.2E-8 score: 32.0
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 99..157 score: 10.740567
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 90..160 e-value: 4.4E-8 score: 34.9
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 92..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..77
None	No IPR available	PANTHER	PTHR11969:SF54	TRANSCRIPTION FACTOR BHLH71	coord: 1..133
None	No IPR available	PANTHER	PTHR11969:SF54	TRANSCRIPTION FACTOR BHLH71	coord: 133..163
None	No IPR available	PANTHER	PTHR11969	MAX DIMERIZATION, MAD	coord: 133..163 coord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG15g02040.1	Cp4.1LG15g02040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity