Cp4.1LG15g01770 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG15g01770
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	NAC domain-containing protein
Location	Cp4.1LG15: 1423387 .. 1423889 (-)
RNA-Seq Expression	Cp4.1LG15g01770
Synteny	Cp4.1LG15g01770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCCATGGGAAATCTGGCTACATTTTGGAGGCACGAACGACAAAGATCTCTATTTCTTCACCAAACTCAAGAGGTCCACCAATAACTTTGGACGTTTGTCGGCGCATATCAACCGCAAGGTCGGCTTGGCCAACGGTACATGGAGTGGCGAGAACTCAGCCAATCCAATTTTTGCTACCAAAACTGATAAAACAATAATCGGCTATTGCAAACGTTTTAGGTTCGTTCTGTCATTTTGATTTCAATTTTTGTTAGAATCTTTAACCTTATGTTTGTGTCCTTGGAACATTTAAGTCATTGAATACATTTTAGATACGAGAATGTCCAGTTGCCCGAGCAACATGGGGAATGGATTATGCATGAATATAGCTTACATCAAGATTCGATACAACAAGCGGTAGATTCAGATTATGTTTTATGCCGATTCAAAAAGAACGAAAGACTTAAAAGAAAATTACAAAATGATCGTGAAGAGCAGCAACTTAACAAGAAAAAATGA

mRNA sequence

ATGGAGCCATGGGAAATCTGGCTACATTTTGGAGGCACGAACGACAAAGATCTCTATTTCTTCACCAAACTCAAGAGGTCCACCAATAACTTTGGACGTTTGTCGGCGCATATCAACCGCAAGGTCGGCTTGGCCAACGGTACATGGAGTGGCGAGAACTCAGCCAATCCAATTTTTGCTACCAAAACTGATAAAACAATAATCGGCTATTGCAAACGTTTTAGATACGAGAATGTCCAGTTGCCCGAGCAACATGGGGAATGGATTATGCATGAATATAGCTTACATCAAGATTCGATACAACAAGCGGTAGATTCAGATTATGTTTTATGCCGATTCAAAAAGAACGAAAGACTTAAAAGAAAATTACAAAATGATCGTGAAGAGCAGCAACTTAACAAGAAAAAATGA

Coding sequence (CDS)

ATGGAGCCATGGGAAATCTGGCTACATTTTGGAGGCACGAACGACAAAGATCTCTATTTCTTCACCAAACTCAAGAGGTCCACCAATAACTTTGGACGTTTGTCGGCGCATATCAACCGCAAGGTCGGCTTGGCCAACGGTACATGGAGTGGCGAGAACTCAGCCAATCCAATTTTTGCTACCAAAACTGATAAAACAATAATCGGCTATTGCAAACGTTTTAGATACGAGAATGTCCAGTTGCCCGAGCAACATGGGGAATGGATTATGCATGAATATAGCTTACATCAAGATTCGATACAACAAGCGGTAGATTCAGATTATGTTTTATGCCGATTCAAAAAGAACGAAAGACTTAAAAGAAAATTACAAAATGATCGTGAAGAGCAGCAACTTAACAAGAAAAAATGA

Protein sequence

MEPWEIWLHFGGTNDKDLYFFTKLKRSTNNFGRLSAHINRKVGLANGTWSGENSANPIFATKTDKTIIGYCKRFRYENVQLPEQHGEWIMHEYSLHQDSIQQAVDSDYVLCRFKKNERLKRKLQNDREEQQLNKKK

Homology

[Close]

BLAST of Cp4.1LG15g01770 vs. NCBI nr
Match: XP_023511534.1 (NAC domain-containing protein 72-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253 bits (645), Expect = 1.45e-83
Identity = 123/134 (91.79%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MEPWEIWLHFGGTNDKDLYFFTKLKRSTNNFGRLSAHINRKVGLANGTWSGENSANPIFA 60
           MEPWEIWL FGG + +DLYFFTKLKRSTNN GRLSAHINRKVGLANGTWSGENSA+PIFA
Sbjct: 49  MEPWEIWLRFGGIDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASPIFA 108

Query: 61  TKTDKTIIGYCKRFRYENVQLPEQHGEWIMHEYSLHQDSIQQAVDSDYVLCRFKKNERLK 120
           TKTDKTIIGYCKRFRYENVQLPE HGEWIMHEYSLHQDSIQQAVDSDYVLCRFKKNERLK
Sbjct: 109 TKTDKTIIGYCKRFRYENVQLPEHHGEWIMHEYSLHQDSIQQAVDSDYVLCRFKKNERLK 168

Query: 121 RKLQNDREEQQLNK 134
           RKLQ D EEQQL+K
Sbjct: 169 RKLQKDLEEQQLSK 182

[Close]

BLAST of Cp4.1LG15g01770 vs. NCBI nr
Match: KAG6571617.1 (NAC domain-containing protein JA2L, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 251 bits (641), Expect = 5.71e-83
Identity = 122/135 (90.37%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 1   MEPWEIWLHFGGTNDKDLYFFTKLKRSTNNFGRLSAHINRKVGLANGTWSGENSANPIFA 60
           MEPWEIWL FGGT+ +DLYFFTKLKRSTNN GRLSAHINRKVGLANGTWSGENSA+PIFA
Sbjct: 49  MEPWEIWLRFGGTDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASPIFA 108

Query: 61  TKTDKTIIGYCKRFRYENVQLPEQHGEWIMHEYSLHQDSIQQAVDSDYVLCRFKKNERLK 120
           TKTDKTIIGYCKRFRYEN QLPE HGEWIMHEYSLHQ+SIQQAVDSDYVLCRFKKNER K
Sbjct: 109 TKTDKTIIGYCKRFRYENAQLPEHHGEWIMHEYSLHQNSIQQAVDSDYVLCRFKKNERFK 168

Query: 121 RKLQNDREEQQLNKK 135
           RKLQ D EEQQL+KK
Sbjct: 169 RKLQKDLEEQQLSKK 183

[Close]

BLAST of Cp4.1LG15g01770 vs. NCBI nr
Match: KAG6571625.1 (NAC domain-containing protein JA2L, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 250 bits (639), Expect = 1.19e-82
Identity = 121/132 (91.67%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MEPWEIWLHFGGTNDKDLYFFTKLKRSTNNFGRLSAHINRKVGLANGTWSGENSANPIFA 60
           +EPWEIWL FGGT+ +DLYFFTKLKRSTNN GRLSAHINRKVGLANGTWSGENSA+PIFA
Sbjct: 49  IEPWEIWLRFGGTDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASPIFA 108

Query: 61  TKTDKTIIGYCKRFRYENVQLPEQHGEWIMHEYSLHQDSIQQAVDSDYVLCRFKKNERLK 120
           TKTDKTIIGYCKRFRYENVQLPE HGEWIMHEYSLHQDSIQQAVDS+YVLCRFKKNERLK
Sbjct: 109 TKTDKTIIGYCKRFRYENVQLPEHHGEWIMHEYSLHQDSIQQAVDSNYVLCRFKKNERLK 168

Query: 121 RKLQNDREEQQL 132
           RKLQ D EEQQL
Sbjct: 169 RKLQKDLEEQQL 180

[Close]

BLAST of Cp4.1LG15g01770 vs. NCBI nr
Match: XP_023511535.1 (NAC transcription factor 25-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 249 bits (636), Expect = 3.41e-82
Identity = 121/134 (90.30%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MEPWEIWLHFGGTNDKDLYFFTKLKRSTNNFGRLSAHINRKVGLANGTWSGENSANPIFA 60
           MEPWEIWL FGG + +DLYFFTKLKRSTNN GRLSAHINRKVGLANGTWSGENSANPIFA
Sbjct: 49  MEPWEIWLRFGGMDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSANPIFA 108

Query: 61  TKTDKTIIGYCKRFRYENVQLPEQHGEWIMHEYSLHQDSIQQAVDSDYVLCRFKKNERLK 120
           TKTDKTIIGYCKRFRYENVQLPE HGEWIMHEYSL+QDSIQQAVDSDYVLCRFKKNERLK
Sbjct: 109 TKTDKTIIGYCKRFRYENVQLPEHHGEWIMHEYSLYQDSIQQAVDSDYVLCRFKKNERLK 168

Query: 121 RKLQNDREEQQLNK 134
           RKLQ + EE+QL+K
Sbjct: 169 RKLQKNLEEEQLSK 182

[Close]

BLAST of Cp4.1LG15g01770 vs. NCBI nr
Match: XP_022963781.1 (NAC domain-containing protein 30-like [Cucurbita moschata])

HSP 1 Score: 248 bits (633), Expect = 9.44e-82
Identity = 121/135 (89.63%), Postives = 126/135 (93.33%), Query Frame = 0


Query: 1   MEPWEIWLHFGGTNDKDLYFFTKLKRSTNNFGRLSAHINRKVGLANGTWSGENSANPIFA 60
           MEPWEIWL FGGT+ +DLYFFTKLKRSTNN GRLSAHINRKVGLANGTWSGENSA+ IFA
Sbjct: 49  MEPWEIWLRFGGTDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASSIFA 108

Query: 61  TKTDKTIIGYCKRFRYENVQLPEQHGEWIMHEYSLHQDSIQQAVDSDYVLCRFKKNERLK 120
           TKTDKTIIGYCKRFRYEN QLPE HGEWIMHEYSLHQDSIQQAVDS+YVLCRFKKNER K
Sbjct: 109 TKTDKTIIGYCKRFRYENAQLPEHHGEWIMHEYSLHQDSIQQAVDSNYVLCRFKKNERFK 168

Query: 121 RKLQNDREEQQLNKK 135
           RKLQ D EEQQL+KK
Sbjct: 169 RKLQKDLEEQQLSKK 183

[Close]

BLAST of Cp4.1LG15g01770 vs. ExPASy TrEMBL
Match: A0A6J1HH13 (NAC domain-containing protein 30-like OS=Cucurbita moschata OX=3662 GN=LOC111463973 PE=4 SV=1)

HSP 1 Score: 248 bits (633), Expect = 4.57e-82
Identity = 121/135 (89.63%), Postives = 126/135 (93.33%), Query Frame = 0


Query: 1   MEPWEIWLHFGGTNDKDLYFFTKLKRSTNNFGRLSAHINRKVGLANGTWSGENSANPIFA 60
           MEPWEIWL FGGT+ +DLYFFTKLKRSTNN GRLSAHINRKVGLANGTWSGENSA+ IFA
Sbjct: 49  MEPWEIWLRFGGTDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASSIFA 108

Query: 61  TKTDKTIIGYCKRFRYENVQLPEQHGEWIMHEYSLHQDSIQQAVDSDYVLCRFKKNERLK 120
           TKTDKTIIGYCKRFRYEN QLPE HGEWIMHEYSLHQDSIQQAVDS+YVLCRFKKNER K
Sbjct: 109 TKTDKTIIGYCKRFRYENAQLPEHHGEWIMHEYSLHQDSIQQAVDSNYVLCRFKKNERFK 168

Query: 121 RKLQNDREEQQLNKK 135
           RKLQ D EEQQL+KK
Sbjct: 169 RKLQKDLEEQQLSKK 183

[Close]

BLAST of Cp4.1LG15g01770 vs. ExPASy TrEMBL
Match: A0A6J1HSR6 (NAC domain-containing protein 72-like OS=Cucurbita maxima OX=3661 GN=LOC111467095 PE=4 SV=1)

HSP 1 Score: 243 bits (621), Expect = 3.18e-80
Identity = 119/134 (88.81%), Postives = 124/134 (92.54%), Query Frame = 0


Query: 1   MEPWEIWLHFGGTNDKDLYFFTKLKRSTNNFGRLSAHINRKVGLANGTWSGENSANPIFA 60
           MEPWEIWL FGG + + LYFFTKLKRSTNN GRLSAHINRKVGLANGTWSGENSA+PIFA
Sbjct: 49  MEPWEIWLRFGGIDGEHLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASPIFA 108

Query: 61  TKTDKTIIGYCKRFRYENVQLPEQHGEWIMHEYSLHQDSIQQAVDSDYVLCRFKKNERLK 120
           TKTD TIIGYCKRFRYENVQLPE+HGEWIMHEYSLHQDSIQQAVD DYVLCRFKKNERLK
Sbjct: 109 TKTDNTIIGYCKRFRYENVQLPERHGEWIMHEYSLHQDSIQQAVDLDYVLCRFKKNERLK 168

Query: 121 RKLQNDREEQQLNK 134
           RKLQ D EEQQ +K
Sbjct: 169 RKLQKDLEEQQHSK 182

[Close]

BLAST of Cp4.1LG15g01770 vs. ExPASy TrEMBL
Match: A0A6J1HXC3 (NAC transcription factor 25-like OS=Cucurbita maxima OX=3661 GN=LOC111467099 PE=4 SV=1)

HSP 1 Score: 218 bits (554), Expect = 1.00e-69
Identity = 107/135 (79.26%), Postives = 114/135 (84.44%), Query Frame = 0


Query: 1   MEPWEIWLHFGGTNDKDLYFFTKLKRSTNNFGRLSAHINRKVGLANGTWSGENSANPIFA 60
           MEPWEIWL FGG   + LYFFTKLKRSTNN GRLSAHINRKVGLANGTWSGENS +PIFA
Sbjct: 49  MEPWEIWLRFGGIAGEHLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSGSPIFA 108

Query: 61  TKTDKTIIGYCKRFRYENVQLPEQHGEWIMHEYSLHQDSIQQAVDSDYVLCRFKKNERLK 120
           TKTDK IIGYCK FRYEN+QLP+ HGEW MHEYSLHQDSI Q VDSDYVLCR  K+ RLK
Sbjct: 109 TKTDKQIIGYCKCFRYENIQLPQHHGEWFMHEYSLHQDSIHQVVDSDYVLCRLSKHGRLK 168

Query: 121 RKLQNDREEQQLNKK 135
           RKL  + E QQ +KK
Sbjct: 169 RKLPKNLELQQHSKK 183

[Close]

BLAST of Cp4.1LG15g01770 vs. ExPASy TrEMBL
Match: A0A6J1HJD2 (uncharacterized protein LOC111464082 OS=Cucurbita moschata OX=3662 GN=LOC111464082 PE=4 SV=1)

HSP 1 Score: 211 bits (538), Expect = 5.68e-68
Identity = 105/135 (77.78%), Postives = 113/135 (83.70%), Query Frame = 0


Query: 1   MEPWEIWLHFGGTNDKDLYFFTKLKRSTNNFGRLSAHINRKVGLANGTWSGENSANPIFA 60
           MEPWEIWL FGG N +DLYFFTKLKR TNN   L A+INRK+GLANGTWSGENSA+PIFA
Sbjct: 1   MEPWEIWLRFGGINGEDLYFFTKLKRLTNNSEHLWAYINRKIGLANGTWSGENSASPIFA 60

Query: 61  TKTDKTIIGYCKRFRYENVQLPEQHGEWIMHEYSLHQDSIQQAVDSDYVLCRFKKNERLK 120
           TKTDK IIGY K FRYENVQLPE HGEW MHEYSLHQDSI Q VDSDYVLCR  KNER++
Sbjct: 61  TKTDKQIIGYFKCFRYENVQLPEHHGEWFMHEYSLHQDSIHQVVDSDYVLCRLSKNERVE 120

Query: 121 RKLQNDREEQQLNKK 135
           RKL  + E QQ +KK
Sbjct: 121 RKLPKNLELQQHSKK 135

[Close]

BLAST of Cp4.1LG15g01770 vs. ExPASy TrEMBL
Match: A0A6J1HIZ2 (NAC transcription factor 25-like OS=Cucurbita moschata OX=3662 GN=LOC111463972 PE=4 SV=1)

HSP 1 Score: 200 bits (508), Expect = 1.97e-62
Identity = 92/103 (89.32%), Postives = 95/103 (92.23%), Query Frame = 0


Query: 1   MEPWEIWLHFGGTNDKDLYFFTKLKRSTNNFGRLSAHINRKVGLANGTWSGENSANPIFA 60
           MEPWEIWL FGGT+ ++LYFFTKLKRSTNN GRLS HINRKVGL NGTWSGENSANPIFA
Sbjct: 49  MEPWEIWLRFGGTDGENLYFFTKLKRSTNNSGRLSVHINRKVGLTNGTWSGENSANPIFA 108

Query: 61  TKTDKTIIGYCKRFRYENVQLPEQHGEWIMHEYSLHQDSIQQA 103
            KTDKTIIGYCKRFRYEN QLPE HGEWIMHEYSLHQDSIQQA
Sbjct: 109 AKTDKTIIGYCKRFRYENAQLPEHHGEWIMHEYSLHQDSIQQA 151

The following BLAST results are available for this feature:

BLAST of Cp4.1LG15g01770 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG15g01770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023511534.1	1.45e-83	91.79	NAC domain-containing protein 72-like [Cucurbita pepo subsp. pepo]	[more]
KAG6571617.1	5.71e-83	90.37	NAC domain-containing protein JA2L, partial [Cucurbita argyrosperma subsp. soror...	[more]
KAG6571625.1	1.19e-82	91.67	NAC domain-containing protein JA2L, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_023511535.1	3.41e-82	90.30	NAC transcription factor 25-like [Cucurbita pepo subsp. pepo]	[more]
XP_022963781.1	9.44e-82	89.63	NAC domain-containing protein 30-like [Cucurbita moschata]	[more]

BLAST of Cp4.1LG15g01770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HH13	4.57e-82	89.63	NAC domain-containing protein 30-like OS=Cucurbita moschata OX=3662 GN=LOC111463...	[more]
A0A6J1HSR6	3.18e-80	88.81	NAC domain-containing protein 72-like OS=Cucurbita maxima OX=3661 GN=LOC11146709...	[more]
A0A6J1HXC3	1.00e-69	79.26	NAC transcription factor 25-like OS=Cucurbita maxima OX=3661 GN=LOC111467099 PE=...	[more]
A0A6J1HJD2	5.68e-68	77.78	uncharacterized protein LOC111464082 OS=Cucurbita moschata OX=3662 GN=LOC1114640...	[more]
A0A6J1HIZ2	1.97e-62	89.32	NAC transcription factor 25-like OS=Cucurbita moschata OX=3662 GN=LOC111463972 P...	[more]

BLAST of Cp4.1LG15g01770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 113..136
None	No IPR available	PANTHER	PTHR31989	NAC DOMAIN-CONTAINING PROTEIN 82-RELATED	coord: 2..129
None	No IPR available	PANTHER	PTHR31989:SF220	NAC TRANSCRIPTION FACTOR-LIKE PROTEIN	coord: 2..129
IPR003441	NAC domain	PFAM	PF02365	NAM	coord: 3..95 e-value: 6.8E-10 score: 40.0
IPR003441	NAC domain	PROSITE	PS51005	NAC	coord: 1..116 score: 19.272375
IPR036093	NAC domain superfamily	GENE3D	2.170.150.80	NAC domain	coord: 1..121 e-value: 2.3E-19 score: 71.7
IPR036093	NAC domain superfamily	SUPERFAMILY	101941	NAC domain	coord: 2..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG15g01770.1	Cp4.1LG15g01770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding