Cp4.1LG15g01350 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG15g01350
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	U6 snRNA-associated Sm-like protein LSm5
Location	Cp4.1LG15: 1025823 .. 1031178 (-)
RNA-Seq Expression	Cp4.1LG15g01350
Synteny	Cp4.1LG15g01350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGTACGGGAGAAATTTCTCAGTCACTCTGGCTAACTATTAAGCTTTCGTTTCGCTCGATGTCTCGTCGAAGGGAATAAGAAATCGCGCCTCTTCGCACTTCACTGACACTTCGCGGCTTCAACTCGCAGGCTTTCTGAAAAACCTTTAATCCATGGCTAACAATCCTTCGCAGCTACTGCCCTCAGGTTCGCTTCTCCTTCTCCTTCGCTTAATTTCTCATTTCCCGATCCTATTTCGCCGGAAATGAACTCTTATTTACTGCGTTTCTTGGTGGGGATTTGCAGAGTTAATCGACCGATGTATAGGGTCTAAAATATGGGTCATTATGAAGGGCGACAAAGAGCTTGTTGGCACTCTTAAAGGATTTGATGTTTATGTCAACATGGTTCTTGAAGATGTTACTGAATAGTAAGTGCCTCTACAAGATCTAGACTCATATTTCTTTGGTTTGTTCTTGTGGGTTGTCTTTGTATTTTGCGTAAATTGTTCTGTTTCAATCTGTAATGTTTGTTCGAAGTGTTTCTGTCTGGGTTAAGGGATTGAATGTTAGGAATCACGACTCTCCATCAAGCATAAGCTCTCGTGGCTTTGGTTTTGGTTTCCCTAAAATGCCTCATGTCAATTGGAGATAGTGTTTGTTCCTTACTTATAAACCCATGATCTTCCTCTTAATTAGCCAACGTGGGACTACTCCTTTCAATAATCCTTATCAATCCTCCCCTCGAACAAAGTACACCATATAGCCTCCGTTGAGGCCTATGGAACTCTCGAATAGTCTCCCCTTAATTGAGGCTCGACTCTTTCTCTTAGCCCTCGAATAAAGTACACCATTTCTTCAACACTTGAGTCGCTTTTGACTACATCTTTGAGGCTTACAACTTCTTTGTTCGACATTTGAGGATTCTATTGACATGGCTAAATTAAGGATGTGACTTTAATACCATGTTAGGAATCACGGCTCTCCACAATGGTATGATATTGTCCATTTTGAGTATAAGCTCTCATGGCTTTGCTTTTGGTTTCCCCAAAAGGCCTCATACCAATGGAGATAGTGTTCGTTACTTATAAACTCACGATCTTCCTCTTAATTAGCCAACGTGGGACTACTCCTTTCAATAGTCCTCCCCTTGAGCAAAGTACACCATATAACCTCCTTTGAGGCCTATGGAGCCCTCGAATAGCCTCTCCTTAATCGAGGCTCGACTCCTTCTCTTGAACCCTCGAATAAAGTACACAGTTTGTTCGACACTTTAGTCATTTTTGACTACACCTTCGAGGCTCACAACTTATTTGTTCGATGTTTGAGGATTCTATTCACATGGTTAAGGCGAGGACATGACTCTGATACCATGTTAGGAATCACAACTCTCCATAATGGTATGATATTGTAAATTTTGAACCTAAGCTCCCGTGGCTTTGCTTTTGGTTTCCCTAAAAGGCCCCATACCAATGGAGATAGTGTTCATTACTTATAAACCCACGATCTTTCTCTTAATTAACCAACATGGGACTACTCCTTTCAATAATCCTCCCCTCTAGCAAAGTACACCATATAACCTCCCTTGAGGCTTATGGAGCCCTCGAATAGCCTCTCCTTAATCAAGGCTCGACTCCTTCTCTTGAACACTTGAATAAAGTACATGCTTTGTTCGACACTTGAGTCACTTTTGACTACACCTTCGAAGCTCACAACTTATTTGTTTGATATTTGAGGATTCTATTCACATGGTTAAGTTGAAGACATGACTCTGATACCATGTTAGGAATCACGACTCTCCATAATGGTATGATATTATCCATTTTGAACGTAAGCTCCCGTGGCTTTGTTTTTGGTTTCCCTAAAAGGCCTCATACCAATGGAGATAATGTTCGTTACTTATAAACCCACGATCTTCCTCTTAATTAGTCAACATGGGACTACTCCTTTCAATAATCCATAACATTGAAAACATGATTTGAGCGAGAGAAAAAGTTAGCGCTAGAGCAATTTGAATTATGGAGTATGGAATTTCATTGAATCCGCTCTGTTCTTCTCAAATCTTAGGAGTGGGGTCGGAGGTTGGCTTTGGAGAGCTTTTGAGTTAAGGTTTAGAAACCCCTTTGTTCAAATTTTTGAAGTGAGATTTCTTCAGAAGTTGAAGAAAGTGGTTGATAATCTCATGCCATGTTCAAATTTTTGTTCAAATGGAGGGCTTGGATCTTGGGCAGCATTAAAATGGTTGAGTACTATATTCTAATTTGTGTGGATGATCCGAGTTATGAGAGGCCTTAGGTGTCACAATCGCCCTTTTCTTGGCAGCAAATTTGGCGATTGTGCGGCACTCACTCTTAGCACTGAGTGAGTCAAGTCAATTTAGGATCGCGTCGCCTACAGTCGGGCAACGTATGCTCAAGTCTCTGGCCTTGATTTGAGAAGAAGATTTTAGAAAGCGGGGCAGAGAGATTTTAAATTTGAGAAGCAAGGTTGAGAGAGATTGAAAACAGTGTTCTATGGCATATAAGAAAAAAAGGCAACAACAACGGCTTAAATAACATTTAACTTTTCGGCTAGGGAGAATTTGACAACTAGTCGCATCCCTCTATAGTACATTTTGAGGCGATTCAGGTCTGCCCAAACCTAGACGTGATTTCACCGAACAGTCATACAAAATCAGGGGAGGAGTTGACAACTAGTCACACCCTCTATAGTACATTCTAGGACATTTCATGCCTATCAGGCGTAGACATGATTCTGCCGAAAGTTTTACACTTAGAAAAAGCAAGAAGGAAATTATACATCATGAAAGCAGTAAAGGAAAGCGATAAAGTGATACAAGGCAAGGGTTTCAGCATGTAATAGGCATGCAGCCATGGACAACACGCCTTGAACAAGCATAACCGTGACATGCCTTAAGCATAACCCGTGACATTCTAAATTTGTGGTGGATACTCTTAGCGGGATTGTCTTGAGAGGGGTGAAAGGCAGGATCATCGAGGGCTTTGATGTGAGACAGGTTAGAGAATCATTCCTCATTTTGAACCATATCTTAGCTTTCTTCTAAACATTGTCAGGGCTTAAAATTAATAAGGGAAATGCCAAATTATGTGTCTAAACTGTGATCTAGGTAAGGTGGGAATGTGGGTTGTGAGGTTGGGTCTTTCTTCTCATCCTTACCTAGGTCTCCCTCTCAGCCATAATCTGAAATCTCTTCCCTTTTGGAGTCCTGTTATTGAGTGAGTAAAAGATTTGCTAATTGGAAGAGAAGCTTTTTTCTCTAAGGGTGGAAGAGTGACCCGCTCTGTAACAGCCCAAGCCCACCGCCAACAAATATTGTCCTCTCTAGGTTTTTCCTTTCGGGCTTCCCTTTTAAAAGGTGTCTTCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGCTTCGTTCTCCTTCCTAACTGATGTGGAATCTCACAAACTCGGTCTTGAATAGAATTCTTATTTATTTCTTTTCCCTTTTTGTTCGGTTTGTAATATGTTCGAGAAGCTCACGAGAGGGCAAAATGTGCGCTTGGTGAGTTGGCATACAATGGAAAAGTTATCGGTTGGAGTGCGAAACAAAGCGTTTCTTTTAGCATGCTTTGTCTCACTCATATGCTTCTTGAAATTTTTCTATGAGGCCACCCAGCTCCAAACCAAACTAAAGTTTCTTATTAAAAAAAAAAGCTGCTTTATTCTATCACGGGTGGCTCCACAAAGCCTACAGCTAAATTATTATTAACCGACACACGACCCATTCAAGGAGAGTACCCGTAGATGGAGCTAATTGTTAGGATCGCACAACAATGCACATACTTGATCTAGATGAATACAAAGAATAGGAGGGAGAGAAAATGCAAGGAGGAATATTGGCTAATTGTTTATATTGATGACTTCAAGTATGTATACCAAAAGAAAATACAGAGAATACGAAAGTACATCTTCAAATCATTGCCTAAGGGTATATATATAGTTTTAGTTTACTATACATAGATCTACCAGATATAAACACCTATATATAAATATCTACCATATATTTCTTTACCTACCTACAACTTTTTACTATCAATAGTCATTTACTATGAATATGACCATTTTTCTCATTTATAGTTTTAATGTCGGTAACAATTGAGTAAGCTATAAATAGGTAGCAGGCTCCATACCCCAACACTAGACTCTCATTTATGTTCTACCAATGAAAATCTAGTTTTAGCTCTTTTGGGCCTGAATTTCCTATCTTGGAACGTCTTTTTATGCTCGTTGCGTGAATGAGTTGTTGCCTTTGTATGAACCTAAAGACTCTTTGTTTTAATCAATTAGCTTCATCTACGAATCAAAATCTAGTGTTAGCTCTTTTGGGCCTGAATTTTCTATCTCGGAACGTCTTTTTATGCGTGTTGCATGAATTAGTTGTCGCCTTTGTATGACTCTTTGTTTTTTGCAACTACTATATGGTTTTAACTCTCTCTATATTAAATTGTAGTGAGATCACTGCTGAGGGGAGACGGATAACAAAGTTGGATCAGATTCTACTCAATGGGAACAACATTGCTATTGTAAGTGACAATCACTGGTTTTAATGTTTACATGCCCTTGTTTTGGAAAGCCACAAATTTGTGGACGAGTTCCTAAACCAATGAACAATGGTTGTGTAAGGGCCTAGCTTCATGATGGCCATGGGTGACCATCCAATTCTCGCCTTAATAATTATAGCGAGTTAATGAAGGGAACCATATTTGTTCGTCCCAACGTTTATGTAGTCGATTCCTATTCATATGCCTTCTATATTAAGGAAGTTGTTGTTTTGGGAGATTAGTTGACACGTGATTAAGTGATAAGTTGGTATGAGTCGATATTCATGTGAACTCATCTTGACATACTCGAGAAACAGATAGATAGAATACTCGGGATATATATTGTATAGAGTCAAGTAGTTATCCATAATACTCGGGCTAAGTTGGTCTAGTTGTCTTTTGAGCATTAGTCAACGTGCATGTAAGCACTTCTATGCAAACGAGCAGTTCTTATCGATGTATGATTGTTGAAACATCTGTTGTTTGTATGCAGCTCGTTCCCGGTGGATCGCCGGACGCAGAATAGGTGTGGAATATGAGTAGCATATTGTTTTGGTTGACAAACTTTGCACCATTGTTATGAGTAACATTTAGTTTTCTTTCAATGTAGAACGACGCAGGTGACAACTTTCATGTATTTGATTCCTTCATCTTCATTGCTTCCTATAGAAATCTATTGGCTCAATTCTAAGTGCATTTGATTGTGTTTTAATACAGTGGTAATGTGCTGAAGTAAATACTTATGTAGATTTTTAAAACATGGTTAGAGATCGAACCTTTGCTCTTT

mRNA sequence

TGGTACGGGAGAAATTTCTCAGTCACTCTGGCTAACTATTAAGCTTTCGTTTCGCTCGATGTCTCGTCGAAGGGAATAAGAAATCGCGCCTCTTCGCACTTCACTGACACTTCGCGGCTTCAACTCGCAGGCTTTCTGAAAAACCTTTAATCCATGGCTAACAATCCTTCGCAGCTACTGCCCTCAGAGTTAATCGACCGATGTATAGGGTCTAAAATATGGGTCATTATGAAGGGCGACAAAGAGCTTGTTGGCACTCTTAAAGGATTTGATGTTTATGTCAACATGGTTCTTGAAGATGTTACTGAATATGAGATCACTGCTGAGGGGAGACGGATAACAAAGTTGGATCAGATTCTACTCAATGGGAACAACATTGCTATTGTAAGTGACAATCACTGCTCGTTCCCGGTGGATCGCCGGACGCAGAATAGAACGACGCAGGTGACAACTTTCATGTATTTGATTCCTTCATCTTCATTGCTTCCTATAGAAATCTATTGGCTCAATTCTAAGTGCATTTGATTGTGTTTTAATACAGTGGTAATGTGCTGAAGTAAATACTTATGTAGATTTTTAAAACATGGTTAGAGATCGAACCTTTGCTCTTT

Coding sequence (CDS)

ATGGCTAACAATCCTTCGCAGCTACTGCCCTCAGAGTTAATCGACCGATGTATAGGGTCTAAAATATGGGTCATTATGAAGGGCGACAAAGAGCTTGTTGGCACTCTTAAAGGATTTGATGTTTATGTCAACATGGTTCTTGAAGATGTTACTGAATATGAGATCACTGCTGAGGGGAGACGGATAACAAAGTTGGATCAGATTCTACTCAATGGGAACAACATTGCTATTGTAAGTGACAATCACTGCTCGTTCCCGGTGGATCGCCGGACGCAGAATAGAACGACGCAGGTGACAACTTTCATGTATTTGATTCCTTCATCTTCATTGCTTCCTATAGAAATCTATTGGCTCAATTCTAAGTGCATTTGA

Protein sequence

MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIVSDNHCSFPVDRRTQNRTTQVTTFMYLIPSSSLLPIEIYWLNSKCI

Homology

[Close]

BLAST of Cp4.1LG15g01350 vs. ExPASy Swiss-Prot
Match: Q9FKB0 (Sm-like protein LSM5 OS=Arabidopsis thaliana OX=3702 GN=LSM5 PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 6.2e-37
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVG LKGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIV 79
          R+TKLDQILLNGNNIAI+
Sbjct: 61 RVTKLDQILLNGNNIAIL 78

[Close]

BLAST of Cp4.1LG15g01350 vs. ExPASy Swiss-Prot
Match: Q2HJH0 (U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus OX=9913 GN=LSM5 PE=3 SV=3)

HSP 1 Score: 124.8 bits (312), Expect = 6.8e-28
Identity = 58/75 (77.33%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 4  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
          NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8  NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 64 KLDQILLNGNNIAIV 79
          KLDQILLNGNNI ++
Sbjct: 68 KLDQILLNGNNITML 82

[Close]

BLAST of Cp4.1LG15g01350 vs. ExPASy Swiss-Prot
Match: Q9Y4Y9 (U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens OX=9606 GN=LSM5 PE=1 SV=3)

HSP 1 Score: 124.8 bits (312), Expect = 6.8e-28
Identity = 58/75 (77.33%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 4  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
          NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8  NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 64 KLDQILLNGNNIAIV 79
          KLDQILLNGNNI ++
Sbjct: 68 KLDQILLNGNNITML 82

[Close]

BLAST of Cp4.1LG15g01350 vs. ExPASy Swiss-Prot
Match: P62322 (U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus OX=10090 GN=Lsm5 PE=3 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 6.8e-28
Identity = 58/75 (77.33%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 4  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
          NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8  NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 64 KLDQILLNGNNIAIV 79
          KLDQILLNGNNI ++
Sbjct: 68 KLDQILLNGNNITML 82

[Close]

BLAST of Cp4.1LG15g01350 vs. ExPASy Swiss-Prot
Match: Q5R628 (U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii OX=9601 GN=LSM5 PE=3 SV=3)

HSP 1 Score: 124.8 bits (312), Expect = 6.8e-28
Identity = 58/75 (77.33%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 4  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
          NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8  NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 64 KLDQILLNGNNIAIV 79
          KLDQILLNGNNI ++
Sbjct: 68 KLDQILLNGNNITML 82

[Close]

BLAST of Cp4.1LG15g01350 vs. NCBI nr
Match: KAG6517311.1 (hypothetical protein ZIOFF_020696 [Zingiber officinale])

HSP 1 Score: 161 bits (407), Expect = 9.83e-49
Identity = 78/83 (93.98%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
          MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL+GFDVYVNMVLEDVTEYEIT+EGR
Sbjct: 1  MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGR 60

Query: 61 RITKLDQILLNGNNIAIVSDNHC 83
          RITKLDQILLNGNNIAIVS++HC
Sbjct: 61 RITKLDQILLNGNNIAIVSEHHC 83

[Close]

BLAST of Cp4.1LG15g01350 vs. NCBI nr
Match: PON51961.1 (LSM domain/archaea-type [Parasponia andersonii])

HSP 1 Score: 156 bits (395), Expect = 4.59e-47
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL+GFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIVS 79
          RITKLDQILLNGNNIAIVS
Sbjct: 61 RITKLDQILLNGNNIAIVS 79

[Close]

BLAST of Cp4.1LG15g01350 vs. NCBI nr
Match: KYP49644.1 (U6 snRNA-associated Sm-like protein LSm5 [Cajanus cajan])

HSP 1 Score: 156 bits (395), Expect = 5.51e-47
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL+GFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIVS 79
          RITKLDQILLNGNNIAIVS
Sbjct: 61 RITKLDQILLNGNNIAIVS 79

[Close]

BLAST of Cp4.1LG15g01350 vs. NCBI nr
Match: XP_019087981.1 (PREDICTED: sm-like protein LSM5 isoform X2 [Camelina sativa])

HSP 1 Score: 155 bits (393), Expect = 6.87e-47
Identity = 76/79 (96.20%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIVS 79
          R+TKLDQILLNGNNIAI++
Sbjct: 61 RVTKLDQILLNGNNIAIIN 79

[Close]

BLAST of Cp4.1LG15g01350 vs. NCBI nr
Match: XP_019462753.1 (PREDICTED: sm-like protein LSM5 [Lupinus angustifolius] >XP_019462754.1 PREDICTED: sm-like protein LSM5 [Lupinus angustifolius] >XP_022771413.1 sm-like protein LSM5 [Durio zibethinus] >KAE9610651.1 putative LSM domain, eukaryotic/archaea-type protein [Lupinus albus] >KAF1876345.1 hypothetical protein Lal_00029693 [Lupinus albus])

HSP 1 Score: 155 bits (391), Expect = 1.71e-46
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIV 78
          RITKLDQILLNGNNIAI+
Sbjct: 61 RITKLDQILLNGNNIAIL 78

[Close]

BLAST of Cp4.1LG15g01350 vs. ExPASy TrEMBL
Match: A0A2P5BT44 (U6 snRNA-associated Sm-like protein LSm5 OS=Parasponia andersonii OX=3476 GN=LSM5 PE=3 SV=1)

HSP 1 Score: 156 bits (395), Expect = 2.22e-47
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL+GFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIVS 79
          RITKLDQILLNGNNIAIVS
Sbjct: 61 RITKLDQILLNGNNIAIVS 79

[Close]

BLAST of Cp4.1LG15g01350 vs. ExPASy TrEMBL
Match: A0A151S4E6 (U6 snRNA-associated Sm-like protein LSm5 OS=Cajanus cajan OX=3821 GN=LSM5 PE=3 SV=1)

HSP 1 Score: 156 bits (395), Expect = 2.67e-47
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL+GFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIVS 79
          RITKLDQILLNGNNIAIVS
Sbjct: 61 RITKLDQILLNGNNIAIVS 79

[Close]

BLAST of Cp4.1LG15g01350 vs. ExPASy TrEMBL
Match: A0A6A5N1J4 (U6 snRNA-associated Sm-like protein LSm5 OS=Lupinus albus OX=3870 GN=LSM5 PE=3 SV=1)

HSP 1 Score: 155 bits (391), Expect = 8.26e-47
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIV 78
          RITKLDQILLNGNNIAI+
Sbjct: 61 RITKLDQILLNGNNIAIL 78

[Close]

BLAST of Cp4.1LG15g01350 vs. ExPASy TrEMBL
Match: A0A6J1HWG6 (U6 snRNA-associated Sm-like protein LSm5 OS=Cucurbita maxima OX=3661 GN=LOC111466899 PE=3 SV=1)

HSP 1 Score: 155 bits (391), Expect = 8.26e-47
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIV 78
          RITKLDQILLNGNNIAI+
Sbjct: 61 RITKLDQILLNGNNIAIL 78

[Close]

BLAST of Cp4.1LG15g01350 vs. ExPASy TrEMBL
Match: A0A6J1HIH3 (U6 snRNA-associated Sm-like protein LSm5 OS=Cucurbita moschata OX=3662 GN=LOC111463894 PE=3 SV=1)

HSP 1 Score: 155 bits (391), Expect = 8.26e-47
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIV 78
          RITKLDQILLNGNNIAI+
Sbjct: 61 RITKLDQILLNGNNIAIL 78

[Close]

BLAST of Cp4.1LG15g01350 vs. TAIR 10
Match: AT5G48870.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 154.8 bits (390), Expect = 4.4e-38
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVG LKGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIV 79
          R+TKLDQILLNGNNIAI+
Sbjct: 61 RVTKLDQILLNGNNIAIL 78

[Close]

BLAST of Cp4.1LG15g01350 vs. TAIR 10
Match: AT4G30330.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 47.4 bits (111), Expect = 9.8e-06
Identity = 27/73 (36.99%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 69
          P  LI R + SK    IW+  + D  + G + GFD Y+N+VL++  E  I  + R+   L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKKTRK--PL 72

Query: 70 DQILLNGNNIAIV 79
           +ILL G+NI ++
Sbjct: 73 GRILLKGDNITLM 83

[Close]

BLAST of Cp4.1LG15g01350 vs. TAIR 10
Match: AT2G18740.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-05
Identity = 27/73 (36.99%), Postives = 41/73 (56.16%), Query Frame = 0


Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 69
          P  LI R + SK    IW+  + D  + G + GFD Y+N+VL++  E  I    R+   L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKNTRK--PL 72

Query: 70 DQILLNGNNIAIV 79
           +ILL G+NI ++
Sbjct: 73 GRILLKGDNITLM 83

[Close]

BLAST of Cp4.1LG15g01350 vs. TAIR 10
Match: AT3G14080.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 42.7 bits (99), Expect = 2.4e-04
Identity = 20/76 (26.32%), Postives = 39/76 (51.32%), Query Frame = 0


Query: 5  PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK 64
          P ++  S  +   +  K+ V+++  ++L+GTL+ FD + N VLE   E  I  E      
Sbjct: 6  PEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIP 65

Query: 65 LDQILLNGNNIAIVSD 81
          L   ++ G N+ ++ +
Sbjct: 66 LGLYVIRGENVVLIGE 81

[Close]

BLAST of Cp4.1LG15g01350 vs. TAIR 10
Match: AT3G14080.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 42.7 bits (99), Expect = 2.4e-04
Identity = 20/76 (26.32%), Postives = 39/76 (51.32%), Query Frame = 0


Query: 5  PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK 64
          P ++  S  +   +  K+ V+++  ++L+GTL+ FD + N VLE   E  I  E      
Sbjct: 6  PEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIP 65

Query: 65 LDQILLNGNNIAIVSD 81
          L   ++ G N+ ++ +
Sbjct: 66 LGLYVIRGENVVLIGE 81

The following BLAST results are available for this feature:

BLAST of Cp4.1LG15g01350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKB0	6.2e-37	96.15	Sm-like protein LSM5 OS=Arabidopsis thaliana OX=3702 GN=LSM5 PE=1 SV=1	[more]
Q2HJH0	6.8e-28	77.33	U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus OX=9913 GN=LSM5 PE=3 SV=3	[more]
Q9Y4Y9	6.8e-28	77.33	U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens OX=9606 GN=LSM5 PE=1 SV...	[more]
P62322	6.8e-28	77.33	U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus OX=10090 GN=Lsm5 PE=3 S...	[more]
Q5R628	6.8e-28	77.33	U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii OX=9601 GN=LSM5 PE=3 SV...	[more]

BLAST of Cp4.1LG15g01350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6517311.1	9.83e-49	93.98	hypothetical protein ZIOFF_020696 [Zingiber officinale]	[more]
PON51961.1	4.59e-47	98.73	LSM domain/archaea-type [Parasponia andersonii]	[more]
KYP49644.1	5.51e-47	98.73	U6 snRNA-associated Sm-like protein LSm5 [Cajanus cajan]	[more]
XP_019087981.1	6.87e-47	96.20	PREDICTED: sm-like protein LSM5 isoform X2 [Camelina sativa]	[more]
XP_019462753.1	1.71e-46	98.72	PREDICTED: sm-like protein LSM5 [Lupinus angustifolius] >XP_019462754.1 PREDICTE...	[more]

BLAST of Cp4.1LG15g01350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5BT44	2.22e-47	98.73	U6 snRNA-associated Sm-like protein LSm5 OS=Parasponia andersonii OX=3476 GN=LSM...	[more]
A0A151S4E6	2.67e-47	98.73	U6 snRNA-associated Sm-like protein LSm5 OS=Cajanus cajan OX=3821 GN=LSM5 PE=3 S...	[more]
A0A6A5N1J4	8.26e-47	98.72	U6 snRNA-associated Sm-like protein LSm5 OS=Lupinus albus OX=3870 GN=LSM5 PE=3 S...	[more]
A0A6J1HWG6	8.26e-47	98.72	U6 snRNA-associated Sm-like protein LSm5 OS=Cucurbita maxima OX=3661 GN=LOC11146...	[more]
A0A6J1HIH3	8.26e-47	98.72	U6 snRNA-associated Sm-like protein LSm5 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of Cp4.1LG15g01350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48870.1	4.4e-38	96.15	Small nuclear ribonucleoprotein family protein	[more]
AT4G30330.1	9.8e-06	36.99	Small nuclear ribonucleoprotein family protein	[more]
AT2G18740.1	1.3e-05	36.99	Small nuclear ribonucleoprotein family protein	[more]
AT3G14080.1	2.4e-04	26.32	Small nuclear ribonucleoprotein family protein	[more]
AT3G14080.2	2.4e-04	26.32	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 12..80 e-value: 3.6E-19 score: 79.7
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 13..79 e-value: 4.0E-20 score: 71.3
None	No IPR available	GENE3D	2.30.30.100		coord: 9..83 e-value: 4.5E-25 score: 89.2
None	No IPR available	PANTHER	PTHR20971:SF4	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5	coord: 1..79
IPR033871	Sm-like protein LSm5	PANTHER	PTHR20971	U6 SNRNA-ASSOCIATED PROTEIN	coord: 1..79
IPR033871	Sm-like protein LSm5	CDD	cd01732	LSm5	coord: 7..77 e-value: 1.16143E-47 score: 145.85
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 8..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG15g01350.1	Cp4.1LG15g01350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0008380	RNA splicing
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003723	RNA binding