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Cp4.1LG15g00850 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TGAGTAAAAGTTGAGACAGTAATTAGTTTCATATTTTTTTCCAAAGCGAGTGAGTGAATGTGTTGGTAAAACATTACAATTATGTAAGACAAAGACAGGAAAAGTATCTTATGATGTTCAAACACATCCATCCACGGCAAAATTTTCAACCTATTTGCTAAATCTAACCTCTTCTTGTCTCCAAAATCTCAGCTCACTGTGCTCTTCTTCCCCACAAAAACACACCAATTTGGATGAGAAGGGAAAAAACTTAGTTGTTCTTCCTTTTTTAGAAAACCCCAAACAAATATCCTTTCAATTTCACAAACCCATTACAAAAAAAGCTTCCTTTTTTCTCTTAAAACATTGAGAAAATCCAAGAACAAGAAGAACACGAAGAACAAGAAGAAGAAACCCTAGAACAAGCTTTGAGGTAAGCTTTTAATGCCAAAATCTCAAAATTTATTGTTTTTTGTGTTAAATTCTTGATTCAAAACTAAACCCTTTTGGGAATTCCTTTTGTGTGTTGAAAATAAAAGAATTGGAATGGACTTCTCAAACAACAGCATCAACCACCAACAAGCTGTAGCAACCTCCTCTACCAGCAGTAGATATGAGAATCAAAAGCGTCGCGATTGGAAAACTTTCGGTCAATATCTCAACAATCATCGCCCTCCGCTCGCTCTCTCGAGATGCAGCGGTGCGCATGTTCTTGAATTCCTCAGGTACCGAACAAAGAAGTAATTTTAAAAAAAAGGGCACCGATTGCCTTTGTCTAGTGTCAAAATTTTCTAGTTCGATCGATCGATCGATCGATTTGTGCGTATATCCAAAAATCTTTCTCGTTTGTAGGTATTTGGATCAATTTGGAAAGACGAAAGTGCACACAGCTATTTGCCCTTTCTATGGACTTCTGAACCCTCCCGCGCCATGCCCGTGCCCTCTACGACAAGCGTGGGGTAGTCTCGACGCGTTGGTTGGCCGCCTTCGAGCCGCTTTCGAAGAGAATGGTGGGAAGCCTGAAGCCAATCCATTTGGGGCTAGAGCTGTGAGGCTCTATCTTCGTGAAGTTCGTGATTTGCAGTCAAAAGCTAGAGGGATTAGCTATGAGAAGAAAAGAAAGCGCCCACAAGCACCTCATGGTGCACCAAGATCATCATAA TGAGTAAAAGTTGAGACAGTAATTAGTTTCATATTTTTTTCCAAAGCGAGTGAGTGAATGTGTTGGTAAAACATTACAATTATGTAAGACAAAGACAGGAAAAGTATCTTATGATGTTCAAACACATCCATCCACGGCAAAATTTTCAACCTATTTGCTAAATCTAACCTCTTCTTGTCTCCAAAATCTCAGCTCACTGTGCTCTTCTTCCCCACAAAAACACACCAATTTGGATGAGAAGGGAAAAAACTTAGTTGTTCTTCCTTTTTTAGAAAACCCCAAACAAATATCCTTTCAATTTCACAAACCCATTACAAAAAAAGCTTCCTTTTTTCTCTTAAAACATTGAGAAAATCCAAGAACAAGAAGAACACGAAGAACAAGAAGAAGAAACCCTAGAACAAGCTTTGAGAATTGGAATGGACTTCTCAAACAACAGCATCAACCACCAACAAGCTGTAGCAACCTCCTCTACCAGCAGTAGATATGAGAATCAAAAGCGTCGCGATTGGAAAACTTTCGGTCAATATCTCAACAATCATCGCCCTCCGCTCGCTCTCTCGAGATGCAGCGGTGCGCATGTTCTTGAATTCCTCAGTCTCGACGCGTTGGTTGGCCGCCTTCGAGCCGCTTTCGAAGAGAATGGTGGGAAGCCTGAAGCCAATCCATTTGGGGCTAGAGCTGTGAGGCTCTATCTTCGTGAAGTTCGTGATTTGCAGTCAAAAGCTAGAGGGATTAGCTATGAGAAGAAAAGAAAGCGCCCACAAGCACCTCATGGTGCACCAAGATCATCATAA ATGGACTTCTCAAACAACAGCATCAACCACCAACAAGCTGTAGCAACCTCCTCTACCAGCAGTAGATATGAGAATCAAAAGCGTCGCGATTGGAAAACTTTCGGTCAATATCTCAACAATCATCGCCCTCCGCTCGCTCTCTCGAGATGCAGCGGTGCGCATGTTCTTGAATTCCTCAGTCTCGACGCGTTGGTTGGCCGCCTTCGAGCCGCTTTCGAAGAGAATGGTGGGAAGCCTGAAGCCAATCCATTTGGGGCTAGAGCTGTGAGGCTCTATCTTCGTGAAGTTCGTGATTTGCAGTCAAAAGCTAGAGGGATTAGCTATGAGAAGAAAAGAAAGCGCCCACAAGCACCTCATGGTGCACCAAGATCATCATAA MDFSNNSINHQQAVATSSTSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQAPHGAPRSS Homology
BLAST of Cp4.1LG15g00850 vs. ExPASy Swiss-Prot
Match: O82268 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1) HSP 1 Score: 165.2 bits (417), Expect = 4.6e-40 Identity = 89/146 (60.96%), Postives = 98/146 (67.12%), Query Frame = 0
BLAST of Cp4.1LG15g00850 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 3.3e-38 Identity = 88/136 (64.71%), Postives = 91/136 (66.91%), Query Frame = 0
BLAST of Cp4.1LG15g00850 vs. ExPASy Swiss-Prot
Match: A2YG32 (Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1) HSP 1 Score: 154.5 bits (389), Expect = 8.2e-37 Identity = 86/133 (64.66%), Postives = 91/133 (68.42%), Query Frame = 0
BLAST of Cp4.1LG15g00850 vs. ExPASy Swiss-Prot
Match: Q652I1 (Protein G1-like2 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L2 PE=1 SV=1) HSP 1 Score: 154.5 bits (389), Expect = 8.2e-37 Identity = 86/133 (64.66%), Postives = 91/133 (68.42%), Query Frame = 0
BLAST of Cp4.1LG15g00850 vs. ExPASy Swiss-Prot
Match: B8AIK3 (Protein G1-like1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05993 PE=3 SV=1) HSP 1 Score: 154.1 bits (388), Expect = 1.1e-36 Identity = 85/137 (62.04%), Postives = 93/137 (67.88%), Query Frame = 0
BLAST of Cp4.1LG15g00850 vs. NCBI nr
Match: XP_023554679.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 228 bits (581), Expect = 2.26e-74 Identity = 125/162 (77.16%), Postives = 125/162 (77.16%), Query Frame = 0
BLAST of Cp4.1LG15g00850 vs. NCBI nr
Match: XP_022963940.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita moschata] >XP_022967438.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita maxima]) HSP 1 Score: 226 bits (576), Expect = 1.31e-73 Identity = 124/162 (76.54%), Postives = 125/162 (77.16%), Query Frame = 0
BLAST of Cp4.1LG15g00850 vs. NCBI nr
Match: KAG7011271.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 226 bits (576), Expect = 1.62e-71 Identity = 124/162 (76.54%), Postives = 125/162 (77.16%), Query Frame = 0
BLAST of Cp4.1LG15g00850 vs. NCBI nr
Match: XP_008447415.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo] >KAA0038043.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo var. makuwa] >TYK20560.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo var. makuwa]) HSP 1 Score: 194 bits (493), Expect = 1.02e-60 Identity = 107/154 (69.48%), Postives = 112/154 (72.73%), Query Frame = 0
BLAST of Cp4.1LG15g00850 vs. NCBI nr
Match: XP_004152053.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucumis sativus] >KGN57900.1 hypothetical protein Csa_011754 [Cucumis sativus]) HSP 1 Score: 193 bits (491), Expect = 2.06e-60 Identity = 110/162 (67.90%), Postives = 112/162 (69.14%), Query Frame = 0
BLAST of Cp4.1LG15g00850 vs. ExPASy TrEMBL
Match: A0A6J1HV32 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita maxima OX=3661 GN=LOC111466976 PE=3 SV=1) HSP 1 Score: 226 bits (576), Expect = 6.32e-74 Identity = 124/162 (76.54%), Postives = 125/162 (77.16%), Query Frame = 0
BLAST of Cp4.1LG15g00850 vs. ExPASy TrEMBL
Match: A0A6J1HJE1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita moschata OX=3662 GN=LOC111464090 PE=3 SV=1) HSP 1 Score: 226 bits (576), Expect = 6.32e-74 Identity = 124/162 (76.54%), Postives = 125/162 (77.16%), Query Frame = 0
BLAST of Cp4.1LG15g00850 vs. ExPASy TrEMBL
Match: A0A5D3DAV8 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001490 PE=3 SV=1) HSP 1 Score: 194 bits (493), Expect = 4.95e-61 Identity = 107/154 (69.48%), Postives = 112/154 (72.73%), Query Frame = 0
BLAST of Cp4.1LG15g00850 vs. ExPASy TrEMBL
Match: A0A1S3BGU6 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC103489867 PE=3 SV=1) HSP 1 Score: 194 bits (493), Expect = 4.95e-61 Identity = 107/154 (69.48%), Postives = 112/154 (72.73%), Query Frame = 0
BLAST of Cp4.1LG15g00850 vs. ExPASy TrEMBL
Match: A0A0A0L7E1 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G383760 PE=3 SV=1) HSP 1 Score: 193 bits (491), Expect = 9.98e-61 Identity = 110/162 (67.90%), Postives = 112/162 (69.14%), Query Frame = 0
BLAST of Cp4.1LG15g00850 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) ) HSP 1 Score: 165.2 bits (417), Expect = 3.3e-41 Identity = 89/146 (60.96%), Postives = 98/146 (67.12%), Query Frame = 0
BLAST of Cp4.1LG15g00850 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) ) HSP 1 Score: 159.1 bits (401), Expect = 2.4e-39 Identity = 88/136 (64.71%), Postives = 91/136 (66.91%), Query Frame = 0
BLAST of Cp4.1LG15g00850 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) ) HSP 1 Score: 152.1 bits (383), Expect = 2.9e-37 Identity = 82/136 (60.29%), Postives = 90/136 (66.18%), Query Frame = 0
BLAST of Cp4.1LG15g00850 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) ) HSP 1 Score: 144.8 bits (364), Expect = 4.6e-35 Identity = 79/136 (58.09%), Postives = 91/136 (66.91%), Query Frame = 0
BLAST of Cp4.1LG15g00850 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) ) HSP 1 Score: 142.9 bits (359), Expect = 1.7e-34 Identity = 79/149 (53.02%), Postives = 96/149 (64.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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