Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCCCATACTAGAATTTAGAACACCACAACACCCTTCTCTTGGCAAGAACAATTGGGGTGGAGCTTCCCCTTTGCTAGCTAGAAACATACCCCATGACACTCTTGAACTTAGGTATCTCAAGCTCAACTCCGCTCGTACTCGAGACGAAATCTTTCCTCTTCTAGAAGACGATCAGCATAGCTATTACTTGCCCGTCTCGTACACGCCTCGACTACAGTGTCTCGAGAAGTCGAGGTACGTGAAAGGGAGTTCGTTTTTGTCGAAATTGTCTTTACCGTGGAGAGGGAAGAGGAAGACATTGTTGGGATCGAACTCGAGGACGAAATGGTTCAAGGGATGGGATTATCAAAACCGATGGCCTCAAGGATGGTGCTAA
mRNA sequence
ATGAGGCCCATACTAGAATTTAGAACACCACAACACCCTTCTCTTGGCAAGAACAATTGGGGTGGAGCTTCCCCTTTGCTAGCTAGAAACATACCCCATGACACTCTTGAACTTAGGTATCTCAAGCTCAACTCCGCTCGTACTCGAGACGAAATCTTTCCTCTTCTAGAAGACGATCAGCATAGCTATTACTTGCCCGTCTCGTACACGCCTCGACTACAGTGTCTCGAGAAGTCGAGGTACGTGAAAGGGAGTTCGTTTTTGTCGAAATTGTCTTTACCGTGGAGAGGGAAGAGGAAGACATTGTTGGGATCGAACTCGAGGACGAAATGGTTCAAGGGATGGGATTATCAAAACCGATGGCCTCAAGGATGGTGCTAA
Coding sequence (CDS)
ATGAGGCCCATACTAGAATTTAGAACACCACAACACCCTTCTCTTGGCAAGAACAATTGGGGTGGAGCTTCCCCTTTGCTAGCTAGAAACATACCCCATGACACTCTTGAACTTAGGTATCTCAAGCTCAACTCCGCTCGTACTCGAGACGAAATCTTTCCTCTTCTAGAAGACGATCAGCATAGCTATTACTTGCCCGTCTCGTACACGCCTCGACTACAGTGTCTCGAGAAGTCGAGGTACGTGAAAGGGAGTTCGTTTTTGTCGAAATTGTCTTTACCGTGGAGAGGGAAGAGGAAGACATTGTTGGGATCGAACTCGAGGACGAAATGGTTCAAGGGATGGGATTATCAAAACCGATGGCCTCAAGGATGGTGCTAA
Protein sequence
MRPILEFRTPQHPSLGKNNWGGASPLLARNIPHDTLELRYLKLNSARTRDEIFPLLEDDQHSYYLPVSYTPRLQCLEKSRYVKGSSFLSKLSLPWRGKRKTLLGSNSRTKWFKGWDYQNRWPQGWC
Homology
BLAST of Cp4.1LG15g00750 vs. NCBI nr
Match:
KAG6571514.1 (hypothetical protein SDJN03_28242, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 258 bits (659), Expect = 9.01e-87
Identity = 120/126 (95.24%), Postives = 120/126 (95.24%), Query Frame = 0
Query: 1 MRPILEFRTPQHPSLGKNNWGGASPLLARNIPHDTLELRYLKLNSARTRDEIFPLLEDDQ 60
MRPILEFRTPQHPSL KNNWGGASPLLARNIPHDTLELRYLKLNSARTRDEIFPLLEDDQ
Sbjct: 1 MRPILEFRTPQHPSLAKNNWGGASPLLARNIPHDTLELRYLKLNSARTRDEIFPLLEDDQ 60
Query: 61 HSYYLPVSYTPRLQCLEKSRYVKGSSFLSKLSLPWRGKRKTLLGSNSRTKWFKGWDYQNR 120
HSYYLPVSY PRLQ LEKSRYVKGSSFLSKLSLPWRGKRKTL G NSR KWFKGWDYQNR
Sbjct: 61 HSYYLPVSYAPRLQRLEKSRYVKGSSFLSKLSLPWRGKRKTLFGLNSRKKWFKGWDYQNR 120
Query: 121 WPQGWC 126
WPQGWC
Sbjct: 121 WPQGWC 126
BLAST of Cp4.1LG15g00750 vs. NCBI nr
Match:
TYK20514.1 (hypothetical protein E5676_scaffold237G00890 [Cucumis melo var. makuwa])
HSP 1 Score: 222 bits (566), Expect = 3.46e-71
Identity = 103/126 (81.75%), Postives = 114/126 (90.48%), Query Frame = 0
Query: 6 EFRTPQHPSLGKNNWGGASPLLARNIPHDTLELRYLKLNSARTRDEIFPLLEDDQH---- 65
EFRTPQHPSLGKNNWGGASPLLARNIPH+T+ELRYLKLN++RTRDEIFPL ED+
Sbjct: 99 EFRTPQHPSLGKNNWGGASPLLARNIPHETIELRYLKLNTSRTRDEIFPLQEDEDDDEVS 158
Query: 66 -SYYLPVSYTPRLQCLEKSRYVKGSSFLSKLSLPWRGKRKTLLGSNSRTKWFKGWDYQNR 125
+YYLPVSYTPRLQ LEK++YVK +SFLSKLSLPW+GKR+TLLGSNSR KWFK WDYQNR
Sbjct: 159 DNYYLPVSYTPRLQRLEKTKYVKKNSFLSKLSLPWKGKRETLLGSNSRKKWFKKWDYQNR 218
BLAST of Cp4.1LG15g00750 vs. NCBI nr
Match:
KGN57931.1 (hypothetical protein Csa_009875 [Cucumis sativus])
HSP 1 Score: 214 bits (545), Expect = 2.35e-69
Identity = 100/128 (78.12%), Postives = 114/128 (89.06%), Query Frame = 0
Query: 1 MRPILEFRTPQHPSLGKNNWGGASPLLARNIPHDTLELRYLKLNSARTRDEIFPLLEDD- 60
MR I+EFRTPQHPS GKNNWGGASPLLARNIPH+TLELRYLKLN+ RTRDEIFPL ED+
Sbjct: 1 MRHIVEFRTPQHPSFGKNNWGGASPLLARNIPHETLELRYLKLNTTRTRDEIFPLQEDEV 60
Query: 61 QHSYYLPVSYTPRLQC-LEKSRYVKGSSFLSKLSLPWRGKRKTLLGSNSRTKWFKGWDYQ 120
+YYLP+SYT +LQ +K++YV+ +SFLSKLSLPW+GKR+TLLGSNSR KWFK WDYQ
Sbjct: 61 DDNYYLPISYTTQLQQHFKKTKYVERNSFLSKLSLPWKGKRETLLGSNSRKKWFKKWDYQ 120
Query: 121 NRWPQGWC 126
NRWPQGWC
Sbjct: 121 NRWPQGWC 128
BLAST of Cp4.1LG15g00750 vs. NCBI nr
Match:
TYI75034.1 (hypothetical protein E1A91_D07G246700v1 [Gossypium mustelinum])
HSP 1 Score: 139 bits (351), Expect = 7.30e-40
Identity = 71/125 (56.80%), Postives = 85/125 (68.00%), Query Frame = 0
Query: 2 RPILEFRTPQHPSLGKNNWGGASPLLARNIPHDTLELRYLKLNSARTRDEIFPLLEDDQH 61
R +LEFRTPQHPSLG NNWGGASPLLAR+IP ++LE RYL+LNS R RDEIFP + D
Sbjct: 4 RELLEFRTPQHPSLGTNNWGGASPLLARDIPKESLEQRYLRLNSMRNRDEIFPA-KADHF 63
Query: 62 SYYLPVSYTPRLQCLEKSRYVKGSSFLSKLSLPWRGKRKTLLGSNSRTKWFKGWDYQNRW 121
+ P Q SR +G FLSKL PW+ + TL ++SR +WF WD +NRW
Sbjct: 64 NCNTPTQAAKHGQAPTPSR--RGRGFLSKLMFPWK-ETATLGANSSRRRWFPRWDPKNRW 123
Query: 122 PQGWC 126
PQGWC
Sbjct: 124 PQGWC 124
BLAST of Cp4.1LG15g00750 vs. NCBI nr
Match:
MBA0822438.1 (hypothetical protein [Gossypium armourianum])
HSP 1 Score: 139 bits (350), Expect = 1.04e-39
Identity = 71/125 (56.80%), Postives = 84/125 (67.20%), Query Frame = 0
Query: 2 RPILEFRTPQHPSLGKNNWGGASPLLARNIPHDTLELRYLKLNSARTRDEIFPLLEDDQH 61
R +LEFRTPQHPSLG NNWGGASPLLAR+IP ++LE RYL+LNS R RDEIFP D
Sbjct: 4 RELLEFRTPQHPSLGTNNWGGASPLLARDIPKESLEQRYLRLNSIRNRDEIFPA-NADHF 63
Query: 62 SYYLPVSYTPRLQCLEKSRYVKGSSFLSKLSLPWRGKRKTLLGSNSRTKWFKGWDYQNRW 121
+ P Q SR +G FLSKL PW+ + TL ++SR +WF WD +NRW
Sbjct: 64 NCNTPTQAAKHGQAPTPSR--RGRGFLSKLMFPWK-ETATLGANSSRRRWFPRWDPKNRW 123
Query: 122 PQGWC 126
PQGWC
Sbjct: 124 PQGWC 124
BLAST of Cp4.1LG15g00750 vs. ExPASy TrEMBL
Match:
A0A5D3DAH9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00890 PE=4 SV=1)
HSP 1 Score: 222 bits (566), Expect = 1.68e-71
Identity = 103/126 (81.75%), Postives = 114/126 (90.48%), Query Frame = 0
Query: 6 EFRTPQHPSLGKNNWGGASPLLARNIPHDTLELRYLKLNSARTRDEIFPLLEDDQH---- 65
EFRTPQHPSLGKNNWGGASPLLARNIPH+T+ELRYLKLN++RTRDEIFPL ED+
Sbjct: 99 EFRTPQHPSLGKNNWGGASPLLARNIPHETIELRYLKLNTSRTRDEIFPLQEDEDDDEVS 158
Query: 66 -SYYLPVSYTPRLQCLEKSRYVKGSSFLSKLSLPWRGKRKTLLGSNSRTKWFKGWDYQNR 125
+YYLPVSYTPRLQ LEK++YVK +SFLSKLSLPW+GKR+TLLGSNSR KWFK WDYQNR
Sbjct: 159 DNYYLPVSYTPRLQRLEKTKYVKKNSFLSKLSLPWKGKRETLLGSNSRKKWFKKWDYQNR 218
BLAST of Cp4.1LG15g00750 vs. ExPASy TrEMBL
Match:
A0A0A0LCZ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G395420 PE=4 SV=1)
HSP 1 Score: 214 bits (545), Expect = 1.14e-69
Identity = 100/128 (78.12%), Postives = 114/128 (89.06%), Query Frame = 0
Query: 1 MRPILEFRTPQHPSLGKNNWGGASPLLARNIPHDTLELRYLKLNSARTRDEIFPLLEDD- 60
MR I+EFRTPQHPS GKNNWGGASPLLARNIPH+TLELRYLKLN+ RTRDEIFPL ED+
Sbjct: 1 MRHIVEFRTPQHPSFGKNNWGGASPLLARNIPHETLELRYLKLNTTRTRDEIFPLQEDEV 60
Query: 61 QHSYYLPVSYTPRLQC-LEKSRYVKGSSFLSKLSLPWRGKRKTLLGSNSRTKWFKGWDYQ 120
+YYLP+SYT +LQ +K++YV+ +SFLSKLSLPW+GKR+TLLGSNSR KWFK WDYQ
Sbjct: 61 DDNYYLPISYTTQLQQHFKKTKYVERNSFLSKLSLPWKGKRETLLGSNSRKKWFKKWDYQ 120
Query: 121 NRWPQGWC 126
NRWPQGWC
Sbjct: 121 NRWPQGWC 128
BLAST of Cp4.1LG15g00750 vs. ExPASy TrEMBL
Match:
A0A5D2UEN6 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D07G246700v1 PE=4 SV=1)
HSP 1 Score: 139 bits (351), Expect = 3.53e-40
Identity = 71/125 (56.80%), Postives = 85/125 (68.00%), Query Frame = 0
Query: 2 RPILEFRTPQHPSLGKNNWGGASPLLARNIPHDTLELRYLKLNSARTRDEIFPLLEDDQH 61
R +LEFRTPQHPSLG NNWGGASPLLAR+IP ++LE RYL+LNS R RDEIFP + D
Sbjct: 4 RELLEFRTPQHPSLGTNNWGGASPLLARDIPKESLEQRYLRLNSMRNRDEIFPA-KADHF 63
Query: 62 SYYLPVSYTPRLQCLEKSRYVKGSSFLSKLSLPWRGKRKTLLGSNSRTKWFKGWDYQNRW 121
+ P Q SR +G FLSKL PW+ + TL ++SR +WF WD +NRW
Sbjct: 64 NCNTPTQAAKHGQAPTPSR--RGRGFLSKLMFPWK-ETATLGANSSRRRWFPRWDPKNRW 123
Query: 122 PQGWC 126
PQGWC
Sbjct: 124 PQGWC 124
BLAST of Cp4.1LG15g00750 vs. ExPASy TrEMBL
Match:
A0A7J9IKX3 (Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_019241 PE=4 SV=1)
HSP 1 Score: 139 bits (350), Expect = 5.02e-40
Identity = 71/125 (56.80%), Postives = 84/125 (67.20%), Query Frame = 0
Query: 2 RPILEFRTPQHPSLGKNNWGGASPLLARNIPHDTLELRYLKLNSARTRDEIFPLLEDDQH 61
R +LEFRTPQHPSLG NNWGGASPLLAR+IP ++LE RYL+LNS R RDEIFP D
Sbjct: 4 RELLEFRTPQHPSLGTNNWGGASPLLARDIPKESLEQRYLRLNSIRNRDEIFPA-NADHF 63
Query: 62 SYYLPVSYTPRLQCLEKSRYVKGSSFLSKLSLPWRGKRKTLLGSNSRTKWFKGWDYQNRW 121
+ P Q SR +G FLSKL PW+ + TL ++SR +WF WD +NRW
Sbjct: 64 NCNTPTQAAKHGQAPTPSR--RGRGFLSKLMFPWK-ETATLGANSSRRRWFPRWDPKNRW 123
Query: 122 PQGWC 126
PQGWC
Sbjct: 124 PQGWC 124
BLAST of Cp4.1LG15g00750 vs. ExPASy TrEMBL
Match:
A0A7J7GBF1 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_024230 PE=4 SV=1)
HSP 1 Score: 137 bits (346), Expect = 2.04e-39
Identity = 72/126 (57.14%), Postives = 81/126 (64.29%), Query Frame = 0
Query: 2 RPILEFRTPQHPSLGKNNWGGASPLLARNIPHDTLELRYLKLNSARTRDEIFPLLEDDQH 61
R +LEFRTPQHPSLG NNWGGASPLLAR+IP + LE RY +LNS RTRDEIFP DD
Sbjct: 4 RELLEFRTPQHPSLGANNWGGASPLLARDIPKEALEQRYARLNSVRTRDEIFPAANDD-- 63
Query: 62 SYYLPVSYTPRLQCLEKSRYVKGSSFLSKLSLPWRGKRKTLLGSNS-RTKWFKGWDYQNR 121
S Y P + P+L C K F +KL R + LGS S R +WF WD NR
Sbjct: 64 SIYFPQAQAPKLGCPPKPAR---RGFFAKLIWRPRKMKTITLGSGSKRRRWFPKWDPTNR 123
Query: 122 WPQGWC 126
WPQGWC
Sbjct: 124 WPQGWC 124
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6571514.1 | 9.01e-87 | 95.24 | hypothetical protein SDJN03_28242, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
TYK20514.1 | 3.46e-71 | 81.75 | hypothetical protein E5676_scaffold237G00890 [Cucumis melo var. makuwa] | [more] |
KGN57931.1 | 2.35e-69 | 78.13 | hypothetical protein Csa_009875 [Cucumis sativus] | [more] |
TYI75034.1 | 7.30e-40 | 56.80 | hypothetical protein E1A91_D07G246700v1 [Gossypium mustelinum] | [more] |
MBA0822438.1 | 1.04e-39 | 56.80 | hypothetical protein [Gossypium armourianum] | [more] |
Match Name | E-value | Identity | Description | |
A0A5D3DAH9 | 1.68e-71 | 81.75 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0LCZ1 | 1.14e-69 | 78.13 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G395420 PE=4 SV=1 | [more] |
A0A5D2UEN6 | 3.53e-40 | 56.80 | Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D07G246700v1 P... | [more] |
A0A7J9IKX3 | 5.02e-40 | 56.80 | Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_019241 PE=4 S... | [more] |
A0A7J7GBF1 | 2.04e-39 | 57.14 | Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_024230 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |