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Cp4.1LG15g00480 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AGGAACTCACCATTATAGTTCATATGAATCTACAAACATACCCAGAAATGTTCCAAGATGATGCACAGAAACAACATGAAATGGCAGACAGACATAGTATACATTAACAGGACATTCAAACCCAACATTGATATCTACTGTTTGAAATTTCATCTTTCCAAAAGTAAAGAACACTTCAAACCCAAAACATTGCAGCAAATCACACCCAAATGCTCATTCAAACTTAATTGGTAATAAAAGAATCATCCTAAAATAATCAGTGGTATCAAACCGGATCTCCAAGTGATAGCTAGAGAGAAAAGATTGATATCTAATACTCATTGGAATCGTGGCACGAAGAACTTGGATCGGACAAGGCAAGATCATCATTGGTAACCTAGAAACTATGAACCAGGGTTTATCTGCTGCCAACAACCGAAAGCAATCCGCCATCGGCGACTTCTTGCTCGTCAATATACAAATCCTCTGTAACCCTAAAGGCGGCATGTATCAAAACAAGAAAAACCCCAATCAAAACCGAAATCAATACGTTCAACGACACATCCGTGAACACCAAAGCGACAATCGTGACCAATCCAAGCACAGCCAACACAACTCGATCATCAACAACACGATTAAACACCACCAATGGACCATCCGTGAAAAAATAAAGGAAGAACCAAGCAACGAACACGATCAAGAAGACAATCAAGGAAACAGGGTGCCAGAGGAGGCTGAGAAAGAGAATGAGCAAGACGATGAAGGTGTAATTAACACGAAAGTAGTTGAGATTGCGCTTACATCGAATGGTCGCTTCGGAAATGGATGAAGGGCGAGTGAAGGACGACGGCGGCTGGAGAAGCTCCCGCCATGGCCGTAAAGTGGCGAAACGGGATAGGATGGGAGCTTCAGAGAAGGCATATGGAGTTGGCTGAACAGAGGCCATTGCCGTTGCTGTAAAACTTCAACTGCGATCAAGCGCCGGCGAGGAGAGAATTCACGAGTGTAGCGACAGCGAAAACGGGAGTCTCGTCTCGAGACAGCCTCCGGTTGATGACACTGACAGTAAAAGAAATAAATAAAATATTATTATTTATTTATTTATTATTTATTTACTATTTATTGTTCGCACGCTCGCCAAATTTCCCGGGCTCTACCTCTCCTTCGCTTCTGCCGCCGAGCCATGGTCTACATAGCTTCCTGGGATGAATTCGTCGAGCGTTCTGTGCAATTGTTCCGCTCCGATCCTAATTCCGTAAGTTTTTACTTCGAAATCCGATTCTGTAGATGTTGCTGCTGAGAAATCAACATCACAGATGAAAAATTAGATCGCATGATTGTATTGTGATTCTACAATTGCTTTTTTAACTCTTGAATTACATGGAATCGAGCTAGTCATCGCTGCAGACTTGGATGATTTGAATTGAGCATAATGAATTGTGAAGAGATTTCTAATTCATCTATTGCGAACTTACCGTCTACTCATATGTTCCGTCTATTGCATTGTTTCTCGTTTTTTCGATTCCTTCTAACTGCGACCGCCGTTTTCTTTTTCAATCCTACTGGAAATTTAGACGCGGTACAACGTAAAGTATCGACACTGCGATGGGAAACTGGTTCTTAAAGTCACCGATAACCGCGAGGTAAGGAATTGTTTGTTGAGATATTGATGAACATCATGTGTTTTTCTGGTCAGTGATCGGGGTTGGAATTTTTATTATTGGCTTTCAACTATATGCTTGGCTCTGTGTTTCATGTGGCAAATTCTCAGCCTTATGAATATTAAACGGAAATGTTTGGAGAAGCGTGTTGAGTCTTTGATGCACTTGTACCCAAGCAGACTTCTGAACAAGTTTTCGTTCAGTCTATGTCTCTCCACTTTATTCTTCTGTAAAGTGTCGAGTAGACAACAGTTGAATAACCAACAACTAGCAATTTAGAAATCAGGTCTTAAACCTAACCATTAATCCAAACCAAATCTTTCATCGATTCATTTGGTTTCTTATTGTGAGATGCTCGGTTGGAGAGGGGAATGAAACATTATTTATAAGGGTGTGAAAACTTCTCCCTAGGAGACACGTTTTAAAAATCTTGAGGGAAAGCCCGAAAGGGAAAGTCCAAAGAGGACAATATCTGCTTGCGGTGGGCTTGGGTTTGGGCTGTTACGCTTATACTGGCTGAAGTTATCTTTCATAAGAGTGTTATGCTTATACGGAAGATTAGAATGTGGGAGTGTTTGTTACCATGCTAGAAATGGTTTTCTTTTCCTTCTCACGTGGAAAAAATGAAAGCTAATTACTGCAAGATACATGGGTGCAAGTTATCAACTAAGAATCTGATTGGTGAAGTTCATACTTTGATGCTTGCTTGTATGGGGAATTTTCTGTATATATGCTTGTACCCTTGTGACAATCTGGACAAGTCAAATGATCTTCTATTGAAATGAACACTCTGGAAGATAACCAATTGGCATAACGGCACATGTCGAATCATAAAAATTTCAATATCGAGATGTTTTAGGTATACTAATTTCCTCTTTTCTTTCCTTTTGTTTTCTCCCTGTTTCCCAGTGTCTTAAGTTCAAGACTGACCAGGCGCAGGATGCCAAGAAGATGGAAAAACTCAACAACATATTCTTCACTCTGATGGCCCGGGGTCCCGATGGTATTTTGCCTTCTAATTTATGTTGATTAATGAAGCATCAGAAAACCCTGTTGAATAATAAATAATCGCTTGCTAGTGACATGATTTAGGACTAAAATTTTGTTAAGATATGAATTCTTGTTGTCTATATAGTTGGAATGGAAACTATATATTCTTTAGTTGCATGAAAGTTTCAAATCCTCAAATTGCAGAAACTTGTAATTAGCTCCATGATGATTTCAGTACTTGAGGATGAGTTCACTACTCCTCTGAATGCCGTTTGAGCCCATGATTGAATGTAGACCTGCTTGCTAACTTATTTATATTGGCCAAAATGGTTCACGGCGAGACTGGAGTTTTCACACAATCTATGATCTATATGCAACCTTCGCATTCATAGACCATCTTTCTTAGTCTATATAATTTTCTTTTTATTTATCCATCAATGCTTCAACCTGTAAGTCTAATGTGCACTCAATTCTACTTATTGGAATTCTCATATATTTTTTGCTTTTCTCTTTTTTTCAGTGGATATATCAGAAGTGACGGGCAAGGACCAGGTTGATGCACAGCCAACCAAGAAAGAGAAGTTGGCTAAGTCTGCTTTCTCGTGCCTCCTGATTTTAGATTTAAGATCATGCCTTGCACATTAAACCATTAGATATCCCACTAATACTACTTGAGTGAATGCATATCAAGATTTTTCTTTAGCAATGCTTTAGTCTTTTACCAAGATGCTCCAACCATCACTATGTTAGCTCTATCTTCAAATCTGCATGGAAGGCCCCTTCTTTAGTTGCTTTTGGGATGTATTTCTGGGATTTGTTTCAGTTATTGGAATTTCACCCATCAAAGCTCAAGTCTTTTCTTGATGGAGCTGAACACTGCTTGTTATAGCAAGAGTGTGTTCGAGATTGCTCTAGGTGAATAG AGGAACTCACCATTATAGTTCATATGAATCTACAAACATACCCAGAAATGTTCCAAGATGATGCACAGAAACAACATGAAATGGCAGACAGACATAGTATACATTAACAGGACATTCAAACCCAACATTGATATCTACTGTTTGAAATTTCATCTTTCCAAAAGTAAAGAACACTTCAAACCCAAAACATTGCAGCAAATCACACCCAAATGCTCATTCAAACTTAATTGGTAATAAAAGAATCATCCTAAAATAATCAGTGGTATCAAACCGGATCTCCAAGTGATAGCTAGAGAGAAAAGATTGATATCTAATACTCATTGGAATCGTGGCACGAAGAACTTGGATCGGACAAGGCAAGATCATCATTGGTAACCTAGAAACTATGAACCAGGGTTTATCTGCTGCCAACAACCGAAAGCAATCCGCCATCGGCGACTTCTTGCTCGTCAATATACAAATCCTCTGTAACCCTAAAGGCGGCATGTATCAAAACAAGAAAAACCCCAATCAAAACCGAAATCAATACGTTCAACGACACATCCGTGAACACCAAAGCGACAATCGTGACCAATCCAAGCACAGCCAACACAACTCGATCATCAACAACACGATTAAACACCACCAATGGACCATCCGTGAAAAAATAAAGGAAGAACCAAGCAACGAACACGATCAAGAAGACAATCAAGGAAACAGGGTGCCAGAGGAGGCTGAGAAAGAGAATGAGCAAGACGATGAAGGTGTAATTAACACGAAAGTAGTTGAGATTGCGCTTACATCGAATGGTCGCTTCGGAAATGGATGAAGGGCGAGTGAAGGACGACGGCGGCTGGAGAAGCTCCCGCCATGGCCGTAAAGTGGCGAAACGGGATAGGATGGGAGCTTCAGAGAAGGCATATGGAGTTGGCTGAACAGAGGCCATTGCCGTTGCTGTAAAACTTCAACTGCGATCAAGCGCCGGCGAGGAGAGAATTCACGAGTGTAGCGACAGCGAAAACGGGAGTCTCGTCTCGAGACAGCCTCCGGTTGATGACACTGACAGTAAAAGAAATAAATAAAATATTATTATTTATTTATTTATTATTTATTTACTATTTATTGTTCGCACGCTCGCCAAATTTCCCGGGCTCTACCTCTCCTTCGCTTCTGCCGCCGAGCCATGGTCTACATAGCTTCCTGGGATGAATTCGTCGAGCGTTCTGTGCAATTGTTCCGCTCCGATCCTAATTCCACGCGGTACAACGTAAAGTATCGACACTGCGATGGGAAACTGGTTCTTAAAGTCACCGATAACCGCGAGTGTCTTAAGTTCAAGACTGACCAGGCGCAGGATGCCAAGAAGATGGAAAAACTCAACAACATATTCTTCACTCTGATGGCCCGGGGTCCCGATGTGGATATATCAGAAGTGACGGGCAAGGACCAGGTTGATGCACAGCCAACCAAGAAAGAGAAGTTGGCTAATTATTGGAATTTCACCCATCAAAGCTCAAGTCTTTTCTTGATGGAGCTGAACACTGCTTGTTATAGCAAGAGTGTGTTCGAGATTGCTCTAGGTGAATAG ATGGTCTACATAGCTTCCTGGGATGAATTCGTCGAGCGTTCTGTGCAATTGTTCCGCTCCGATCCTAATTCCACGCGGTACAACGTAAAGTATCGACACTGCGATGGGAAACTGGTTCTTAAAGTCACCGATAACCGCGAGTGTCTTAAGTTCAAGACTGACCAGGCGCAGGATGCCAAGAAGATGGAAAAACTCAACAACATATTCTTCACTCTGATGGCCCGGGGTCCCGATGTGGATATATCAGAAGTGACGGGCAAGGACCAGGTTGATGCACAGCCAACCAAGAAAGAGAAGTTGGCTAATTATTGGAATTTCACCCATCAAAGCTCAAGTCTTTTCTTGATGGAGCTGAACACTGCTTGTTATAGCAAGAGTGTGTTCGAGATTGCTCTAGGTGAATAG MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKEKLANYWNFTHQSSSLFLMELNTACYSKSVFEIALGE Homology
BLAST of Cp4.1LG15g00480 vs. ExPASy Swiss-Prot
Match: Q9SMU7 (Signal recognition particle 9 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SRP9 PE=3 SV=1) HSP 1 Score: 180.6 bits (457), Expect = 1.1e-44 Identity = 84/97 (86.60%), Postives = 93/97 (95.88%), Query Frame = 0
BLAST of Cp4.1LG15g00480 vs. ExPASy Swiss-Prot
Match: O04438 (Signal recognition particle 9 kDa protein OS=Zea mays OX=4577 GN=SRP9 PE=3 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 2.6e-41 Identity = 79/97 (81.44%), Postives = 88/97 (90.72%), Query Frame = 0
BLAST of Cp4.1LG15g00480 vs. ExPASy Swiss-Prot
Match: Q55GL2 (Signal recognition particle 9 kDa protein OS=Dictyostelium discoideum OX=44689 GN=srp9 PE=3 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 6.5e-16 Identity = 35/71 (49.30%), Postives = 56/71 (78.87%), Query Frame = 0
BLAST of Cp4.1LG15g00480 vs. ExPASy Swiss-Prot
Match: P21262 (Signal recognition particle 9 kDa protein OS=Canis lupus familiaris OX=9615 GN=SRP9 PE=1 SV=2) HSP 1 Score: 73.2 bits (178), Expect = 2.6e-12 Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 0
BLAST of Cp4.1LG15g00480 vs. ExPASy Swiss-Prot
Match: P49458 (Signal recognition particle 9 kDa protein OS=Homo sapiens OX=9606 GN=SRP9 PE=1 SV=2) HSP 1 Score: 72.8 bits (177), Expect = 3.3e-12 Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 0
BLAST of Cp4.1LG15g00480 vs. NCBI nr
Match: XP_023554094.1 (signal recognition particle 9 kDa protein-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 207 bits (527), Expect = 1.34e-66 Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0
BLAST of Cp4.1LG15g00480 vs. NCBI nr
Match: XP_022963515.1 (signal recognition particle 9 kDa protein [Cucurbita moschata] >XP_022963516.1 signal recognition particle 9 kDa protein [Cucurbita moschata] >KAG7011249.1 Signal recognition particle 9 kDa protein [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 200 bits (509), Expect = 4.45e-64 Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0
BLAST of Cp4.1LG15g00480 vs. NCBI nr
Match: XP_038887366.1 (signal recognition particle 9 kDa protein [Benincasa hispida] >XP_038887367.1 signal recognition particle 9 kDa protein [Benincasa hispida]) HSP 1 Score: 199 bits (505), Expect = 1.81e-63 Identity = 95/97 (97.94%), Postives = 97/97 (100.00%), Query Frame = 0
BLAST of Cp4.1LG15g00480 vs. NCBI nr
Match: KAG6571487.1 (Signal recognition particle 9 kDa protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 199 bits (505), Expect = 1.81e-63 Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 0
BLAST of Cp4.1LG15g00480 vs. NCBI nr
Match: XP_022967500.1 (signal recognition particle 9 kDa protein-like [Cucurbita maxima] >XP_022967501.1 signal recognition particle 9 kDa protein-like [Cucurbita maxima] >XP_022967502.1 signal recognition particle 9 kDa protein-like [Cucurbita maxima] >XP_022967503.1 signal recognition particle 9 kDa protein-like [Cucurbita maxima]) HSP 1 Score: 198 bits (504), Expect = 2.58e-63 Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 0
BLAST of Cp4.1LG15g00480 vs. ExPASy TrEMBL
Match: A0A6J1HI87 (Signal recognition particle 9 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111463821 PE=3 SV=1) HSP 1 Score: 200 bits (509), Expect = 2.16e-64 Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0
BLAST of Cp4.1LG15g00480 vs. ExPASy TrEMBL
Match: A0A6J1HSA1 (Signal recognition particle 9 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111466989 PE=3 SV=1) HSP 1 Score: 198 bits (504), Expect = 1.25e-63 Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 0
BLAST of Cp4.1LG15g00480 vs. ExPASy TrEMBL
Match: A0A1S3BLU0 (Signal recognition particle 9 kDa protein OS=Cucumis melo OX=3656 GN=LOC103491251 PE=3 SV=1) HSP 1 Score: 197 bits (502), Expect = 2.52e-63 Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 0
BLAST of Cp4.1LG15g00480 vs. ExPASy TrEMBL
Match: A0A5D3E2L2 (Signal recognition particle 9 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001060 PE=3 SV=1) HSP 1 Score: 197 bits (502), Expect = 2.52e-63 Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 0
BLAST of Cp4.1LG15g00480 vs. ExPASy TrEMBL
Match: A0A0A0LIQ2 (Signal recognition particle 9 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_2G224280 PE=3 SV=1) HSP 1 Score: 197 bits (502), Expect = 2.52e-63 Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 0
BLAST of Cp4.1LG15g00480 vs. TAIR 10
Match: AT3G49100.1 (Signal recognition particle, SRP9/SRP14 subunit ) HSP 1 Score: 180.6 bits (457), Expect = 8.1e-46 Identity = 84/97 (86.60%), Postives = 93/97 (95.88%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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