Cp4.1LG14g10300 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG14g10300
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	SKP1-like protein
Location	Cp4.1LG14: 8710286 .. 8711941 (+)
RNA-Seq Expression	Cp4.1LG14g10300
Synteny	Cp4.1LG14g10300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATAATTAAAAATAAAAAAAGAAAGTGAATTAAAATAACCGCCGGGCAGCGGCTGGCCCTGTGGCAAGAATCTATATAAACCGGTTCTTGGAGACCCAAAGTTCTCCAACTTTTCTTCTTCGTCCTCTTCTTCACAAAAATCACCATCAATTTTTCTGCTAATCCAAATCCAAATCCATGTCCTCCTCCAAGAAGATTACTCTCAAGAGCTCCGATGGCGAGTCTTTTGAAATCGACGAGGTCGTTGCTCTCGAGTCTCAGACCATCCGCCACATGATCGAGGACGATTGCGCCGATAACGGCATCCCTCTTCCCAACGTCACTAGCAAAATCCTCGCCAAGGTCATCGAGTACTCTCACAAGCACGTCGATGCTTCCTCCGCCGATCCCCGCGTGTCTGAAGAGGATCTCAAGGCCTGGGACCGCGACTTCGTTAATGTCGACCAAGCCACTCTTTTCGATCTCATTCTGGTAACCTTTTCTTCCTGCTTTAGATCGATCGACTCGATTGTCTAGGGTTTACCTGGTTCCTATGGTTTTTTTTCTCAAGAATTTGACTCGGCAAACAATCGTTTTGATCTTCTTTGTCGCTGATTACTGTTCTTCTTTATCTGTTATATCTGTATCGACGTTTGTAATTGTGCTAGGGCTTGGTATTGTTTGATGTTTTGGAAATGGAAAGTTCGTTCAAAGGAAAAGTTCTACTGGAAATTGTTTAGTATTGTTGATCAATTGGTATGGTGCCTAAGTAATGGATTAAGATTCAATAGGACGAGCAAGGTCTTTTCACTTTGATGATTGAAGACGGTGATGCAAAATGCTTTCGGCATCATTATCCTTTGTCCTTCATGTTGAGATTGGGGTTAATGGACATCTGTATTTGGCGTCATATTGAAATGATTGTTGCTCAGGTTAATCTTCGTGGTTCTATATTTAAGCCGTGTTCTTGTTGCAGAGAATTCCAAGCTGCCTGGGGATTCATTCTTGACTATTATTATTCTTGATAATTTCTTGATTTGGCGCCATATAAAATTCTCTCCTATATTCTACTCTGCAGGCTGCAAATTATCTGAACATCAAGAGCTTGTTAGACCTGACATGCCAGACCGTAGCTGACATGATCAAGGGAAAGACCCCAGAGGAGATCCGAAAGACCTTTAACATCAAGAACGATTTCACACCTGAGGAAGAGGAGGAAGTTCGCAGGGAGAATCAGTGGGCTTTTGAATGATTTGAAGTCTCATAAGAGTGCTCAAGGATCTTGATCAATAAGGTCTGTACATGGTAGTAGTATTCGATCTCTGTTGTATTCACATAGTTTGTGAAAATGGTACTGTATGAACCTAATCATAATTGTATCATGATCATGTTTGTGTGAGGAATGCATTGACTACCTAATTGTCTCATACCATCATTATGTTAAATTTTGATAGTAGCCTATGCTCAAGATATCTTGTCTCCCCATAATTGAAGCCTTGTGAGGGAAGGGAGGAAGCTATGTTGCCTAGACTCTCTTCTCAATTCTCACTACTCGACTTTGTTTTTGTGTTTCTTGTTGCTTGACACTCTGTTCCACTTCCATCGAACTTATGTGCTCTGTGTTTGTTGTTGGACTTCTCTACTTGTGCACTCAGTTGTCCTTAGACTTATTAGTTC

mRNA sequence

TATAATTAAAAATAAAAAAAGAAAGTGAATTAAAATAACCGCCGGGCAGCGGCTGGCCCTGTGGCAAGAATCTATATAAACCGGTTCTTGGAGACCCAAAGTTCTCCAACTTTTCTTCTTCGTCCTCTTCTTCACAAAAATCACCATCAATTTTTCTGCTAATCCAAATCCAAATCCATGTCCTCCTCCAAGAAGATTACTCTCAAGAGCTCCGATGGCGAGTCTTTTGAAATCGACGAGGTCGTTGCTCTCGAGTCTCAGACCATCCGCCACATGATCGAGGACGATTGCGCCGATAACGGCATCCCTCTTCCCAACGTCACTAGCAAAATCCTCGCCAAGGTCATCGAGTACTCTCACAAGCACGTCGATGCTTCCTCCGCCGATCCCCGCGTGTCTGAAGAGGATCTCAAGGCCTGGGACCGCGACTTCGTTAATGTCGACCAAGCCACTCTTTTCGATCTCATTCTGGCTGCAAATTATCTGAACATCAAGAGCTTGTTAGACCTGACATGCCAGACCGTAGCTGACATGATCAAGGGAAAGACCCCAGAGGAGATCCGAAAGACCTTTAACATCAAGAACGATTTCACACCTGAGGAAGAGGAGGAAGTTCGCAGGGAGAATCAGTGGGCTTTTGAATGATTTGAAGTCTCATAAGAGTGCTCAAGGATCTTGATCAATAAGGTCTGTACATGGTAGTAGTATTCGATCTCTGTTGTATTCACATAGTTTGTGAAAATGGTACTGTATGAACCTAATCATAATTGTATCATGATCATGTTTGTGTGAGGAATGCATTGACTACCTAATTGTCTCATACCATCATTATGTTAAATTTTGATAGTAGCCTATGCTCAAGATATCTTGTCTCCCCATAATTGAAGCCTTGTGAGGGAAGGGAGGAAGCTATGTTGCCTAGACTCTCTTCTCAATTCTCACTACTCGACTTTGTTTTTGTGTTTCTTGTTGCTTGACACTCTGTTCCACTTCCATCGAACTTATGTGCTCTGTGTTTGTTGTTGGACTTCTCTACTTGTGCACTCAGTTGTCCTTAGACTTATTAGTTC

Coding sequence (CDS)

ATGTCCTCCTCCAAGAAGATTACTCTCAAGAGCTCCGATGGCGAGTCTTTTGAAATCGACGAGGTCGTTGCTCTCGAGTCTCAGACCATCCGCCACATGATCGAGGACGATTGCGCCGATAACGGCATCCCTCTTCCCAACGTCACTAGCAAAATCCTCGCCAAGGTCATCGAGTACTCTCACAAGCACGTCGATGCTTCCTCCGCCGATCCCCGCGTGTCTGAAGAGGATCTCAAGGCCTGGGACCGCGACTTCGTTAATGTCGACCAAGCCACTCTTTTCGATCTCATTCTGGCTGCAAATTATCTGAACATCAAGAGCTTGTTAGACCTGACATGCCAGACCGTAGCTGACATGATCAAGGGAAAGACCCCAGAGGAGATCCGAAAGACCTTTAACATCAAGAACGATTTCACACCTGAGGAAGAGGAGGAAGTTCGCAGGGAGAATCAGTGGGCTTTTGAATGA

Protein sequence

MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYSHKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE

Homology

[Close]

BLAST of Cp4.1LG14g10300 vs. ExPASy Swiss-Prot
Match: Q39255 (SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 6.7e-65
Identity = 124/159 (77.99%), Postives = 140/159 (88.05%), Query Frame = 0


Query: 3   SSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYSHK 62
           S+KKI LKSSDGESFE++E VALESQTI HM+EDDC DNG+PLPNVTSKILAKVIEY  +
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVDASSADPR------VSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTV 122
           HV+A+++          S++DLKAWD DF+ +DQATLF+LILAANYLNIK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of Cp4.1LG14g10300 vs. ExPASy Swiss-Prot
Match: Q9FHW7 (SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 6.7e-65
Identity = 130/171 (76.02%), Postives = 142/171 (83.04%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYS 60
           MS+ +KITLKSSDGE+FEIDE VALESQTI+HMIEDDC DNGIPLPNVTSKIL+KVIEY 
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  HKHVDA-----SSADPRV-----------SEEDLKAWDRDFVNVDQATLFDLILAANYLN 120
            +HV+A     ++AD              S+EDLK WD +F+ VDQ TLFDLILAANYLN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           IK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of Cp4.1LG14g10300 vs. ExPASy Swiss-Prot
Match: Q6PL11 (SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.1e-64
Identity = 129/166 (77.71%), Postives = 137/166 (82.53%), Query Frame = 0


Query: 5   KKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYSHKHV 64
           K ITLKSSDGE FE++E VA+ESQTIRHMIEDDCADNGIPLPNV SKIL+KVIEY +KHV
Sbjct: 8   KMITLKSSDGEEFEVEEAVAMESQTIRHMIEDDCADNGIPLPNVNSKILSKVIEYCNKHV 67

Query: 65  ---------------DASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLL 124
                           A++A P  S EDLK WD DFV VDQATLFDLILAANYLNIK LL
Sbjct: 68  HAAAAAASKAADDAASAAAAVPPPSGEDLKNWDADFVKVDQATLFDLILAANYLNIKGLL 127

Query: 125 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEE+RRENQWAFE
Sbjct: 128 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIRRENQWAFE 173

[Close]

BLAST of Cp4.1LG14g10300 vs. ExPASy Swiss-Prot
Match: Q651E8 (SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 5.2e-57
Identity = 117/165 (70.91%), Postives = 134/165 (81.21%), Query Frame = 0


Query: 7   ITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYSHKHVD- 66
           ITL+S +G+ FE+ E VA+ESQTIRHMIED CAD GIPLPNV++KIL+KVIEY  KHV+ 
Sbjct: 11  ITLRSCEGQVFEVAEAVAMESQTIRHMIEDKCADTGIPLPNVSAKILSKVIEYCSKHVEA 70

Query: 67  ----ASSAD-----------PRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLD 126
               A++AD            +  E++LK +D +FV VDQ+TLFDLILAANYLNIK LLD
Sbjct: 71  RGGAAAAADGDAPAPAAVEANKAVEDELKTFDAEFVKVDQSTLFDLILAANYLNIKGLLD 130

Query: 127 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 131 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 175

[Close]

BLAST of Cp4.1LG14g10300 vs. ExPASy Swiss-Prot
Match: O49484 (SKP1-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=ASK11 PE=1 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 7.5e-56
Identity = 111/153 (72.55%), Postives = 129/153 (84.31%), Query Frame = 0


Query: 3   SSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYSHK 62
           SSK I L SSDG+SFE++E VA++SQTI HM+EDDC  +GIPL NV SKIL KVIEY  K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  HVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKG 122
           H     A+P +SEEDL  WD  F++++Q+T+F+LILAANYLNIKSLLDLTCQTVADMIKG
Sbjct: 62  H-HVDEANP-ISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKG 121

Query: 123 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 122 KTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of Cp4.1LG14g10300 vs. NCBI nr
Match: XP_023553541.1 (SKP1-like protein 1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 301 bits (770), Expect = 9.32e-103
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYS 60
           MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYS
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYS 60

Query: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120
           HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Cp4.1LG14g10300 vs. NCBI nr
Match: XP_022965297.1 (SKP1-like protein 1A [Cucurbita maxima] >KAG6577790.1 SKP1-like protein 1A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015829.1 SKP1-like protein 1A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 299 bits (765), Expect = 5.40e-102
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYS 60
           MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEY 
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60

Query: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120
           HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Cp4.1LG14g10300 vs. NCBI nr
Match: XP_022923340.1 (SKP1-like protein 1A [Cucurbita moschata])

HSP 1 Score: 297 bits (761), Expect = 2.20e-101
Identity = 153/155 (98.71%), Postives = 153/155 (98.71%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYS 60
           MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKIL KVIEY 
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYC 60

Query: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120
           HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Cp4.1LG14g10300 vs. NCBI nr
Match: XP_038903121.1 (SKP1-like protein 1A [Benincasa hispida])

HSP 1 Score: 286 bits (732), Expect = 5.81e-97
Identity = 145/155 (93.55%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYS 60
           MSSSKKITLKSSDG+SFE+DE VAL+SQTIRHMIEDDCADNGIPLPNVTS ILAKVIEY 
Sbjct: 1   MSSSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSNILAKVIEYC 60

Query: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120
            KHVDASSADPR+S++DLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  RKHVDASSADPRLSDDDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Cp4.1LG14g10300 vs. NCBI nr
Match: XP_022145436.1 (SKP1-like protein 1A [Momordica charantia])

HSP 1 Score: 281 bits (720), Expect = 3.93e-95
Identity = 143/155 (92.26%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYS 60
           MSSSKKI LKSSDGE FE+DE VALESQTIRHMIEDDCADNGIPLPNV+SKILAKVIEY 
Sbjct: 1   MSSSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYC 60

Query: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120
            KHVDAS+++PR SEEDLKAWDRDFVNVDQATLFDLILAANYLNIK+LLDLTCQTVADMI
Sbjct: 61  RKHVDASNSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Cp4.1LG14g10300 vs. ExPASy TrEMBL
Match: A0A6J1HJY3 (SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111465205 PE=3 SV=1)

HSP 1 Score: 299 bits (765), Expect = 2.61e-102
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYS 60
           MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEY 
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60

Query: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120
           HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Cp4.1LG14g10300 vs. ExPASy TrEMBL
Match: A0A6J1EBI5 (SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431062 PE=3 SV=1)

HSP 1 Score: 297 bits (761), Expect = 1.06e-101
Identity = 153/155 (98.71%), Postives = 153/155 (98.71%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYS 60
           MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKIL KVIEY 
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYC 60

Query: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120
           HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Cp4.1LG14g10300 vs. ExPASy TrEMBL
Match: A0A6J1CWB0 (SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111014883 PE=3 SV=1)

HSP 1 Score: 281 bits (720), Expect = 1.90e-95
Identity = 143/155 (92.26%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYS 60
           MSSSKKI LKSSDGE FE+DE VALESQTIRHMIEDDCADNGIPLPNV+SKILAKVIEY 
Sbjct: 1   MSSSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYC 60

Query: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120
            KHVDAS+++PR SEEDLKAWDRDFVNVDQATLFDLILAANYLNIK+LLDLTCQTVADMI
Sbjct: 61  RKHVDASNSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Cp4.1LG14g10300 vs. ExPASy TrEMBL
Match: A0A6J5VI66 (SKP1-like protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS45864 PE=3 SV=1)

HSP 1 Score: 275 bits (702), Expect = 1.09e-92
Identity = 139/154 (90.26%), Postives = 147/154 (95.45%), Query Frame = 0


Query: 2   SSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYSH 61
           SSSKKITLKSSDGESFE++E VALESQTI+HMIEDDCADNGIPLPNVTSKILAKVIEY  
Sbjct: 3   SSSKKITLKSSDGESFEVEEAVALESQTIKHMIEDDCADNGIPLPNVTSKILAKVIEYCK 62

Query: 62  KHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMIK 121
           KHVDA+  D ++SE+DLKAWD+DFV VDQATLFDLILAANYLNIKSLLDLTCQTVADMIK
Sbjct: 63  KHVDAAKPDEKISEDDLKAWDQDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIK 122

Query: 122 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 123 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]

BLAST of Cp4.1LG14g10300 vs. ExPASy TrEMBL
Match: A0A6P5SPM9 (SKP1-like protein OS=Prunus avium OX=42229 GN=LOC110758167 PE=3 SV=1)

HSP 1 Score: 274 bits (700), Expect = 2.20e-92
Identity = 139/154 (90.26%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 2   SSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYSH 61
           SSSKKITLKSSDGESFE++E VALESQTI+HMIEDDCADNGIPLPNVTSKILAKVIEY  
Sbjct: 3   SSSKKITLKSSDGESFEVEEAVALESQTIKHMIEDDCADNGIPLPNVTSKILAKVIEYCK 62

Query: 62  KHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMIK 121
           KHVDA+  D ++SE+DLKAWD DFV VDQATLFDLILAANYLNIKSLLDLTCQTVADMIK
Sbjct: 63  KHVDAAKPDEKISEDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIK 122

Query: 122 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
           GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 123 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]

BLAST of Cp4.1LG14g10300 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 248.1 bits (632), Expect = 4.8e-66
Identity = 124/159 (77.99%), Postives = 140/159 (88.05%), Query Frame = 0


Query: 3   SSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYSHK 62
           S+KKI LKSSDGESFE++E VALESQTI HM+EDDC DNG+PLPNVTSKILAKVIEY  +
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVDASSADPR------VSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTV 122
           HV+A+++          S++DLKAWD DF+ +DQATLF+LILAANYLNIK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of Cp4.1LG14g10300 vs. TAIR 10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein )

HSP 1 Score: 248.1 bits (632), Expect = 4.8e-66
Identity = 130/171 (76.02%), Postives = 142/171 (83.04%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYS 60
           MS+ +KITLKSSDGE+FEIDE VALESQTI+HMIEDDC DNGIPLPNVTSKIL+KVIEY 
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  HKHVDA-----SSADPRV-----------SEEDLKAWDRDFVNVDQATLFDLILAANYLN 120
            +HV+A     ++AD              S+EDLK WD +F+ VDQ TLFDLILAANYLN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           IK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of Cp4.1LG14g10300 vs. TAIR 10
Match: AT4G34210.1 (SKP1-like 11 )

HSP 1 Score: 218.0 bits (554), Expect = 5.3e-57
Identity = 111/153 (72.55%), Postives = 129/153 (84.31%), Query Frame = 0


Query: 3   SSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYSHK 62
           SSK I L SSDG+SFE++E VA++SQTI HM+EDDC  +GIPL NV SKIL KVIEY  K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  HVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKG 122
           H     A+P +SEEDL  WD  F++++Q+T+F+LILAANYLNIKSLLDLTCQTVADMIKG
Sbjct: 62  H-HVDEANP-ISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKG 121

Query: 123 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 122 KTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of Cp4.1LG14g10300 vs. TAIR 10
Match: AT4G34470.1 (SKP1-like 12 )

HSP 1 Score: 216.1 bits (549), Expect = 2.0e-56
Identity = 112/154 (72.73%), Postives = 130/154 (84.42%), Query Frame = 0


Query: 3   SSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYSHK 62
           SSK I L SSDG+SFE++E VA++SQTI HM+EDDC  +GIPL NV SKIL KVIEY  K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  -HVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMIK 122
            HVD   A+P +SEEDL  WD  F++++Q+T+F+LILAANYLNIKSL DLTCQTVADMIK
Sbjct: 62  YHVD--EANP-ISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIK 121

Query: 123 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           GKTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 122 GKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of Cp4.1LG14g10300 vs. TAIR 10
Match: AT1G20140.1 (SKP1-like 4 )

HSP 1 Score: 210.7 bits (535), Expect = 8.5e-55
Identity = 108/160 (67.50%), Postives = 126/160 (78.75%), Query Frame = 0


Query: 3   SSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYSHK 62
           + K I LKSSDGESFEI+E VA++SQTI+HMIEDDCADNGIPLPNVT  ILAKVIEY  K
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVDASSAD-------PRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQT 122
           HV+A++              ++LK WD +FV VDQ TLFDLILAANYLNI  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKA 123

Query: 123 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           VAD ++GKTPE++R  FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g10300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39255	6.7e-65	77.99	SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1	[more]
Q9FHW7	6.7e-65	76.02	SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1	[more]
Q6PL11	1.1e-64	77.71	SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1	[more]
Q651E8	5.2e-57	70.91	SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1	[more]
O49484	7.5e-56	72.55	SKP1-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=ASK11 PE=1 SV=1	[more]

BLAST of Cp4.1LG14g10300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023553541.1	9.32e-103	100.00	SKP1-like protein 1A [Cucurbita pepo subsp. pepo]	[more]
XP_022965297.1	5.40e-102	99.35	SKP1-like protein 1A [Cucurbita maxima] >KAG6577790.1 SKP1-like protein 1A, part...	[more]
XP_022923340.1	2.20e-101	98.71	SKP1-like protein 1A [Cucurbita moschata]	[more]
XP_038903121.1	5.81e-97	93.55	SKP1-like protein 1A [Benincasa hispida]	[more]
XP_022145436.1	3.93e-95	92.26	SKP1-like protein 1A [Momordica charantia]	[more]

BLAST of Cp4.1LG14g10300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJY3	2.61e-102	99.35	SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111465205 PE=3 SV=1	[more]
A0A6J1EBI5	1.06e-101	98.71	SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431062 PE=3 SV=1	[more]
A0A6J1CWB0	1.90e-95	92.26	SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111014883 PE=3 SV=1	[more]
A0A6J5VI66	1.09e-92	90.26	SKP1-like protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS45864 PE=3 SV=1	[more]
A0A6P5SPM9	2.20e-92	90.26	SKP1-like protein OS=Prunus avium OX=42229 GN=LOC110758167 PE=3 SV=1	[more]

BLAST of Cp4.1LG14g10300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75950.1	4.8e-66	77.99	S phase kinase-associated protein 1	[more]
AT5G42190.1	4.8e-66	76.02	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT4G34210.1	5.3e-57	72.55	SKP1-like 11	[more]
AT4G34470.1	2.0e-56	72.73	SKP1-like 12	[more]
AT1G20140.1	8.5e-55	67.50	SKP1-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 4..105 e-value: 9.7E-50 score: 181.2
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 5..64 e-value: 1.2E-28 score: 99.1
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 106..153 e-value: 1.9E-30 score: 104.6
IPR016897	S-phase kinase-associated protein 1	PIRSF	PIRSF028729	SCF_Skp	coord: 1..155 e-value: 3.2E-66 score: 220.1
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 1..155
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 1..155 e-value: 1.2E-73 score: 248.6
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 5..65
None	No IPR available	PANTHER	PTHR11165:SF145	PUTATIVE-RELATED	coord: 1..155
None	No IPR available	CDD	cd18322	BTB_POZ_SKP1	coord: 6..120 e-value: 3.15453E-58 score: 175.088
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	81382	Skp1 dimerisation domain-like	coord: 78..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g10300.1	Cp4.1LG14g10300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0097602	cullin family protein binding